Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 8.6e-48 193.4 100 100.0
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 4.1e-42 174.5 100 86.0
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 6.0e-41 170.6 100 86.0
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 6.6e-40 167.2 100 83.0
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 7.1e-34 147.1 100 73.0
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 7.1e-34 147.1 100 73.0
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.3e-32 142.9 100 72.0
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.7e-32 142.5 100 70.0
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 2.3e-32 142.1 86 77.9
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 8.7e-32 140.2 86 77.9
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 1.1e-31 139.8 100 70.0
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.1e-31 139.8 97 69.1
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 1.9e-31 139.0 93 73.1
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 2.5e-31 138.7 92 73.9
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 5.6e-31 137.5 83 79.5
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 5.6e-31 137.5 95 71.6
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 7.3e-31 137.1 102 67.6
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 9.6e-31 136.7 89 75.3
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 9.6e-31 136.7 89 73.0
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.3e-30 136.3 88 75.0
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.3e-30 136.3 84 76.2
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 1.3e-30 136.3 86 74.4
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 1.6e-30 136.0 97 70.1
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 1.6e-30 136.0 99 66.7
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.1e-30 135.6 89 71.9
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.6e-30 134.8 86 75.6
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 3.6e-30 134.8 85 76.5
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 3.6e-30 134.8 95 71.6
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 3.6e-30 134.8 99 68.7
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 4.8e-30 134.4 102 66.7
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 4.8e-30 134.4 100 68.0
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 6.2e-30 134.0 95 69.5
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 6.2e-30 134.0 86 76.7
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 6.2e-30 134.0 101 67.3
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 8.1e-30 133.7 96 66.7
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 8.1e-30 133.7 96 66.7
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 8.1e-30 133.7 87 74.7
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 1.4e-29 132.9 82 78.0
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 1.4e-29 132.9 82 78.0
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 3.1e-29 131.7 94 69.1
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 3.1e-29 131.7 101 67.3
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 4.0e-29 131.3 86 72.1
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 4.0e-29 131.3 97 68.0
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 4.0e-29 131.3 89 69.7
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 5.3e-29 131.0 82 78.0
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 5.3e-29 131.0 85 72.9
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 5.3e-29 131.0 94 72.3
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 5.3e-29 131.0 80 77.5
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 5.3e-29 131.0 92 67.4
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 6.9e-29 130.6 88 72.7
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 6.9e-29 130.6 102 66.7
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 6.9e-29 130.6 91 68.1
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 9.0e-29 130.2 94 72.3
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 1.2e-28 129.8 96 64.6
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 1.2e-28 129.8 83 74.7
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.2e-28 129.8 93 65.6
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 1.5e-28 129.4 96 64.6
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 2.0e-28 129.0 96 62.5
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 2.0e-28 129.0 89 75.3
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 2.0e-28 129.0 96 62.5
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 2.6e-28 128.6 92 66.3
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 2.6e-28 128.6 92 66.3
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 2.6e-28 128.6 92 66.3
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.6e-28 128.6 90 72.2
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 2.6e-28 128.6 94 66.0
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 3.4e-28 128.3 93 67.7
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 3.4e-28 128.3 94 66.0
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 4.4e-28 127.9 86 72.1
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 5.8e-28 127.5 96 62.5
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 5.8e-28 127.5 96 65.6
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 7.6e-28 127.1 100 68.0
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 7.6e-28 127.1 84 71.4
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 9.9e-28 126.7 96 64.6
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 9.9e-28 126.7 82 72.0
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 9.9e-28 126.7 85 76.5
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 9.9e-28 126.7 98 65.3
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.3e-27 126.3 86 69.8
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.3e-27 126.3 96 64.6
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 1.3e-27 126.3 88 68.2
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 1.7e-27 125.9 95 64.2
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 1.7e-27 125.9 95 64.2
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 1.7e-27 125.9 95 64.2
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 1.7e-27 125.9 80 75.0
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 1.7e-27 125.9 98 66.3
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 2.2e-27 125.6 95 63.2
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 2.9e-27 125.2 92 67.4
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 2.9e-27 125.2 95 63.2
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 3.8e-27 124.8 80 73.8
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.8e-27 124.8 81 76.5
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.8e-27 124.8 81 76.5
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 3.8e-27 124.8 81 76.5
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 4.9e-27 124.4 80 81.2
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 4.9e-27 124.4 81 70.4
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 4.9e-27 124.4 81 70.4
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 4.9e-27 124.4 81 70.4
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 4.9e-27 124.4 81 70.4
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 4.9e-27 124.4 89 68.5
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 6.4e-27 124.0 95 63.2
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 1.1e-26 123.2 86 74.4
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 1.4e-26 122.9 81 75.3
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 1.4e-26 122.9 88 71.6
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 1.4e-26 122.9 88 71.6
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 2.4e-26 122.1 86 73.3
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 3.2e-26 121.7 76 76.3
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 5.4e-26 120.9 78 76.9
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.2e-25 119.8 80 68.8
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.1e-25 119.0 83 74.7
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 3.5e-25 118.2 92 62.0
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 4.6e-25 117.9 77 77.9
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 6.0e-25 117.5 84 65.5
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 6.0e-25 117.5 84 65.5
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 6.0e-25 117.5 84 65.5
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 6.0e-25 117.5 93 65.6
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.0e-24 116.7 82 74.4
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.3e-24 116.3 81 72.8
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.7e-24 115.9 82 67.1
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 1.7e-24 115.9 81 69.1
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 1.7e-24 115.9 79 69.6
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 3.9e-24 114.8 99 62.6
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 3.9e-24 114.8 80 73.8
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 5.1e-24 114.4 71 80.3
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 6.6e-24 114.0 76 71.1
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 6.6e-24 114.0 99 58.6
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 8.7e-24 113.6 81 71.6
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 2.5e-23 112.1 73 79.5
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 7.3e-23 110.5 81 66.7
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 7.3e-23 110.5 76 69.7
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 2.8e-22 108.6 85 67.1
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 4.5e-20 101.3 83 65.1
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 2.9e-19 98.6 74 70.3
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.4e-18 96.3 71 70.4
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 4.2e-18 94.7 83 59.0
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 9.3e-18 93.6 78 61.5
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 1.6e-17 92.8 79 59.5
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 5.1e-16 87.8 95 51.6
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.5e-15 86.3 77 59.7
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 3.3e-15 85.1 54 72.2
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 9.6e-15 83.6 89 50.6
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 9.6e-15 83.6 59 67.8
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 9.6e-15 83.6 59 67.8
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.6e-14 82.8 78 60.3
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.7e-14 81.6 66 62.1
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.8e-13 79.3 59 62.7
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 4.5e-12 74.7 51 66.7
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 1.3e-06 56.6 39 69.2


User provided reference genes

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