Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 9.8e-141 503.4 253 100.0
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 5.1e-129 464.5 253 93.7
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 4.3e-128 461.5 253 92.9
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 2.1e-122 442.6 253 88.5
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 3.0e-113 412.1 253 81.0
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 6.2e-111 404.4 245 80.4
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 6.9e-110 401.0 253 79.4
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 1.5e-109 399.8 250 78.4
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 2.0e-109 399.4 253 78.7
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 2.6e-109 399.1 252 78.2
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 2.6e-109 399.1 252 79.0
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 5.8e-109 397.9 252 77.4
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 7.6e-109 397.5 250 78.0
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 1.7e-108 396.4 253 77.1
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 2.2e-108 396.0 253 77.9
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 2.2e-108 396.0 253 77.9
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 4.9e-108 394.8 253 76.7
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 1.1e-107 393.7 253 75.5
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 1.4e-107 393.3 253 77.1
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 1.4e-107 393.3 253 77.1
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 2.4e-107 392.5 243 79.8
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 2.4e-107 392.5 253 76.7
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 4.2e-107 391.7 253 77.1
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 5.5e-107 391.3 245 78.8
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 1.2e-106 390.2 253 77.1
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 1.6e-106 389.8 253 77.9
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 2.1e-106 389.4 250 76.8
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 2.1e-106 389.4 232 82.8
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 2.1e-106 389.4 253 76.3
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 2.7e-106 389.0 253 76.3
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 4.6e-106 388.3 252 77.0
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 6.0e-106 387.9 253 75.9
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 7.9e-106 387.5 245 76.3
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 7.9e-106 387.5 244 77.9
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 7.9e-106 387.5 239 77.4
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 1.0e-105 387.1 244 78.3
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 1.0e-105 387.1 253 74.7
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 2.3e-105 386.0 260 76.2
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 3.0e-105 385.6 253 75.5
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 6.7e-105 384.4 253 75.5
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 1.1e-104 383.6 253 75.9
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 1.1e-104 383.6 244 76.6
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 1.5e-104 383.3 253 75.5
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 1.5e-104 383.3 253 73.9
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 1.9e-104 382.9 253 75.5
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 2.5e-104 382.5 253 75.1
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 2.5e-104 382.5 253 74.7
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 2.5e-104 382.5 253 74.7
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 2.5e-104 382.5 253 74.7
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 1.3e-103 380.2 253 73.1
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.3e-103 380.2 253 74.3
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 2.1e-103 379.4 244 76.6
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 2.1e-103 379.4 253 73.9
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 2.1e-103 379.4 253 73.9
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 2.8e-103 379.0 253 74.3
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 3.7e-103 378.6 243 77.8
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 4.8e-103 378.3 253 73.5
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 6.2e-103 377.9 244 76.2
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 6.2e-103 377.9 255 74.9
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 1.4e-102 376.7 253 72.3
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 1.8e-102 376.3 253 73.1
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 2.4e-102 375.9 276 71.7
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 6.9e-102 374.4 243 77.0
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 6.9e-102 374.4 251 73.7
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 2.6e-101 372.5 275 69.5
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 3.4e-101 372.1 250 76.0
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 1.3e-100 370.2 248 73.4
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 1.3e-100 370.2 238 74.8
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 2.2e-100 369.4 253 72.7
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 2.2e-100 369.4 235 76.2
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 4.9e-100 368.2 250 72.8
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 7.1e-99 364.4 242 74.4
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 7.1e-99 364.4 241 74.7
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 1.6e-98 363.2 241 74.7
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 6.7e-97 357.8 246 70.3
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 8.7e-97 357.5 285 64.2
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 1.5e-96 356.7 240 72.1
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 5.7e-96 354.8 253 70.8
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 7.4e-96 354.4 240 71.7
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 7.4e-96 354.4 253 70.8
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.6e-95 353.2 273 66.3
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 2.1e-95 352.8 221 79.6
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 2.1e-95 352.8 252 67.9
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 2.1e-95 352.8 240 71.2
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 3.1e-94 349.0 247 72.5
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 5.0e-92 341.7 262 65.6
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 1.9e-91 339.7 250 69.2
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 9.3e-91 337.4 222 76.6
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 1.6e-90 336.7 271 63.1
Prupe.1G208100 Prunus persica HOM05D006316 ORTHO05D008032 5.5e-83 311.6 208 73.6
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 1.0e-81 307.4 244 65.6
Dinv32178 Davidia involucrata HOM05D006316 ORTHO05D008032 2.6e-80 302.8 251 63.3
Rhsim13G0235700 Rhododendron simsii HOM05D006316 ORTHO05D008032 3.3e-80 302.4 286 58.7
Solyc11g013400.3 Solanum lycopersicum HOM05D006316 ORTHO05D008032 4.8e-79 298.5 208 73.6
TAR362G1307 Trochodendron aralioides HOM05D006316 ORTHO05D008032 2.4e-78 296.2 204 72.1
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 9.1e-78 294.3 238 60.5
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 3.4e-77 292.4 234 61.1
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 7.7e-77 291.2 223 66.4
AUR62023666 Chenopodium quinoa HOM05D006316 ORTHO05D008032 4.7e-74 282.0 318 50.9
Rhsim04G0168500 Rhododendron simsii HOM05D006316 ORTHO05D008032 2.8e-71 272.7 206 67.5
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 7.0e-70 268.1 172 76.7
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 2.6e-69 266.2 253 53.0
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 8.8e-65 251.1 232 52.6
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 1.6e-61 240.4 172 68.6
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 4.5e-61 238.8 245 55.5
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 8.5e-60 234.6 237 49.8
Rhsim04G0168300 Rhododendron simsii HOM05D006316 ORTHO05D008032 3.2e-59 232.6 206 61.2
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 1.8e-57 226.9 186 63.4
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 1.8e-57 226.9 186 63.4
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 2.6e-56 223.0 168 68.5
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 2.9e-52 209.5 239 44.8
Ca_21361_v3 Cicer arietinum L. HOM05D006316 ORTHO05D008032 1.8e-49 200.3 123 78.9
SEGI_01321 Sequoiadendron giganteum HOM05D006316 ORTHO05D008032 3.4e-40 169.5 140 63.6
PGSC0003DMG400027786 Solanum tuberosum HOM05D006316 ORTHO05D008032 3.0e-36 156.4 122 63.9
Glyma.09G159500 Glycine max HOM05D006316 ORTHO05D008032 6.6e-36 155.2 175 50.3
CSS0015998 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 1.2e-32 144.4 93 73.1
Glyma.17G042702 Glycine max HOM05D006316 ORTHO05D008032 1.3e-28 131.0 92 71.7
Cpa.g.sc146.8 Carica papaya HOM05D006316 ORTHO05D008032 9.5e-27 124.8 61 96.7
Solyc11g013410.2 Solanum lycopersicum HOM05D006316 ORTHO05D008032 1.8e-25 120.6 86 70.9
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 7.1e-22 108.6 83 62.7
DCAR_030416 Daucus carota HOM05D006316 ORTHO05D008032 1.0e-20 104.8 134 51.5
Cpa.g.c44700 Carica papaya HOM05D006316 ORTHO05D008032 4.7e-18 95.9 67 68.7
Oeu020629.4 Olea europaea HOM05D002546 ORTHO05D002671 5.8e-16 89.0 69 66.7
Cfa025220 Carpinus fangiana HOM05D006316 ORTHO05D008032 4.9e-15 85.9 152 31.6
RcHm_v2.0_Chr5g0025761 Rosa chinensis HOM05D006316 ORTHO05D008032 2.1e-10 70.5 65 55.4


User provided reference genes

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