Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G005330 Citrullus lanatus HOM05D003236 ORTHO05D003620 3.4e-71 271.6 136 100.0
ClCG05G011190 Citrullus lanatus HOM05D003236 ORTHO05D003620 1.3e-38 163.3 104 83.7
MELO3C006553.2 Cucumis melo HOM05D003236 ORTHO05D003620 1.3e-38 163.3 104 83.7
CsaV3_3G013580 Cucumis sativus L. HOM05D003236 ORTHO05D003620 1.7e-38 162.9 104 82.7
Sed0017985 Sechium edule HOM05D003236 ORTHO05D003620 3.9e-35 151.8 104 76.0
PGR142G1056 Punica granatum HOM05D003236 ORTHO05D003620 4.0e-32 141.7 104 68.3
Glyma.15G105400 Glycine max HOM05D003236 ORTHO05D003620 9.0e-32 140.6 108 67.6
Eucgr.B01114 Eucalyptus grandis HOM05D003236 ORTHO05D003620 1.5e-31 139.8 106 67.0
Phvul.006G152000 Phaseolus vulgaris HOM05D003236 ORTHO05D003620 2.6e-31 139.0 108 65.7
Glyma.13G207200 Glycine max HOM05D003236 ORTHO05D003620 3.4e-31 138.7 108 65.7
arahy.Tifrunner.gnm1.ann1.4929ND Arachis hypogaea HOM05D003236 ORTHO05D003620 5.8e-31 137.9 104 64.4
arahy.Tifrunner.gnm1.ann1.IC6NPA Arachis hypogaea HOM05D000043 ORTHO05D001371 5.8e-31 137.9 104 64.4
Eucgr.B01115 Eucalyptus grandis HOM05D003236 ORTHO05D003620 1.0e-30 137.1 106 65.1
Thhalv10021124m.g Eutrema salsugineum HOM05D003236 ORTHO05D003620 2.2e-30 136.0 104 67.3
CARHR080570 Cardamine hirsuta HOM05D003236 ORTHO05D003620 2.9e-30 135.6 104 67.3
THA.LOC104818806 Tarenaya hassleriana HOM05D003236 ORTHO05D003620 3.8e-30 135.2 119 61.3
VMungo0540G1138 Vigna mungo HOM05D003236 ORTHO05D003620 3.8e-30 135.2 108 64.8
Ca_00632_v3 Cicer arietinum L. HOM05D003236 ORTHO05D003620 4.9e-30 134.8 108 63.9
Carub.0003s0550 Capsella rubella HOM05D003236 ORTHO05D003620 6.5e-30 134.4 104 65.4
Lalb_Chr15g0087401 Lupinus albus HOM05D003236 ORTHO05D003620 6.5e-30 134.4 108 63.9
FAN04G3165 Fragaria x ananassa HOM05D003236 ORTHO05D003620 8.4e-30 134.0 104 66.3
FAN08G2949 Fragaria x ananassa HOM05D003236 ORTHO05D003620 8.4e-30 134.0 104 66.3
RcHm_v2.0_Chr4g0417501 Rosa chinensis HOM05D003236 ORTHO05D003620 8.4e-30 134.0 104 67.3
THA.LOC104822305 Tarenaya hassleriana HOM05D003236 ORTHO05D003620 8.4e-30 134.0 119 60.5
Lsat_1_v5_gn_1_50180 Lactuca sativa HOM05D003236 ORTHO05D003620 1.4e-29 133.3 104 63.5
Manes.08G075500 Manihot esculenta HOM05D003236 ORTHO05D003620 1.4e-29 133.3 104 66.3
Sed0022772 Sechium edule HOM05D003236 ORTHO05D003620 1.4e-29 133.3 104 67.3
HanXRQChr01g0028881 Helianthus annuus HOM05D003236 ORTHO05D003620 1.9e-29 132.9 104 63.5
Lj6g0023183 Lotus japonicus HOM05D003236 ORTHO05D003620 1.9e-29 132.9 108 63.0
CiPaw.01G161600 Carya illinoinensis HOM05D003236 ORTHO05D003620 2.5e-29 132.5 105 68.6
Cc03_g03280 Coffea canephora HOM05D003236 ORTHO05D003620 2.5e-29 132.5 108 62.0
COL.COLO4_08743 Corchorus olitorius HOM05D003236 ORTHO05D003620 2.5e-29 132.5 108 63.9
BcaB08g36592 Brassica carinata HOM05D003236 ORTHO05D003620 3.2e-29 132.1 130 56.9
MBI17_g13566_MAGBIO Magnolia biondii HOM05D003236 ORTHO05D003620 3.2e-29 132.1 106 63.2
Sp6g25180 Schrenkiella parvula HOM05D003236 ORTHO05D008795 3.2e-29 132.1 130 56.9
CAN.G851.10 Capsicum annuum HOM05D003236 ORTHO05D003620 5.5e-29 131.3 104 62.5
CiPaw.02G093600 Carya illinoinensis HOM05D003236 ORTHO05D003620 5.5e-29 131.3 105 67.6
Ciclev10005413m.g Citrus clementina HOM05D003236 ORTHO05D003620 5.5e-29 131.3 104 65.4
FvH4_4g14820 Fragaria vesca HOM05D003236 ORTHO05D003620 5.5e-29 131.3 105 66.7
FAN12G2674 Fragaria x ananassa HOM05D003236 ORTHO05D003620 5.5e-29 131.3 105 66.7
Lalb_Chr18g0056161 Lupinus albus HOM05D003236 ORTHO05D003620 5.5e-29 131.3 108 63.0
Medtr2g022600 Medicago truncatula HOM05D003236 ORTHO05D003620 5.5e-29 131.3 108 63.9
TAR362G0648 Trochodendron aralioides HOM05D003236 ORTHO05D003620 5.5e-29 131.3 104 64.4
MD13G1185700 Malus domestica HOM05D003236 ORTHO05D003620 7.1e-29 131.0 104 66.3
Sopen06g019440 Solanum pennellii HOM05D003236 ORTHO05D003620 7.1e-29 131.0 104 63.5
Thhalv10014360m.g Eutrema salsugineum HOM05D003236 ORTHO05D003620 9.3e-29 130.6 138 54.3
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 9.3e-29 130.6 105 66.7
Duzib147G0392 Durio zibethinus HOM05D003236 ORTHO05D003620 1.2e-28 130.2 104 64.4
Sopen01g016440 Solanum pennellii HOM05D003236 ORTHO05D003620 1.2e-28 130.2 104 63.5
Thecc.04G030700 Theobroma cacao HOM05D003236 ORTHO05D003620 1.2e-28 130.2 104 63.5
TPR.G7640 Trifolium pratense HOM05D003236 ORTHO05D003620 1.2e-28 130.2 108 62.0
Atru.chr4.2535 Acer truncatum HOM05D003236 ORTHO05D003620 1.6e-28 129.8 104 64.4
BcaC05g30061 Brassica carinata HOM05D003236 ORTHO05D003620 1.6e-28 129.8 104 62.5
Dinv38409 Davidia involucrata HOM05D003236 ORTHO05D003620 1.6e-28 129.8 104 61.5
Nn4g26225 Nelumbo nucifera HOM05D003236 ORTHO05D003620 1.6e-28 129.8 104 64.4
Solyc06g054330.3 Solanum lycopersicum HOM05D003236 ORTHO05D003620 1.6e-28 129.8 104 62.5
Aa31LG5G16550 Aethionema arabicum HOM05D003236 ORTHO05D003620 2.1e-28 129.4 104 63.5
CANSAT56G0357 Cannabis sativa HOM05D003236 ORTHO05D003620 2.1e-28 129.4 104 65.4
Sc13g0004130 Simmondsia chinensis HOM05D003236 ORTHO05D003620 2.1e-28 129.4 105 64.8
CSS0018012 Camellia sinensis var. sinensis HOM05D003236 ORTHO05D003620 2.7e-28 129.0 104 64.4
ECA248G1348 Erigeron canadensis HOM05D000874 ORTHO05D001049 2.7e-28 129.0 132 54.5
Nitab4.5_0000321g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 3.5e-28 128.6 108 60.2
Nitab4.5_0006333g0030 Nicotiana tabacum HOM05D003236 ORTHO05D003620 3.5e-28 128.6 108 60.2
SalBow2G2662 Salvia bowleyana HOM05D003236 ORTHO05D003620 3.5e-28 128.6 107 61.7
Cpa.g.sc125.28 Carica papaya HOM05D003236 ORTHO05D003620 4.6e-28 128.3 104 63.5
Nitab4.5_0008223g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 4.6e-28 128.3 108 60.2
Gohir.D04G078600 Gossypium hirsutum HOM05D003236 ORTHO05D003620 6.0e-28 127.9 104 62.5
Gorai.012G088500 Gossypium raimondii HOM05D003236 ORTHO05D003620 6.0e-28 127.9 104 62.5
Peaxi162Scf00069g01432 Petunia axillaris HOM05D003236 ORTHO05D003620 6.0e-28 127.9 104 60.6
MSTRG.10005 Avicennia marina HOM05D003236 ORTHO05D003620 7.9e-28 127.5 105 61.0
ECA248G2845 Erigeron canadensis HOM05D003236 ORTHO05D003620 7.9e-28 127.5 104 63.5
Ah.10g034980 Amaranthus hybridus HOM05D003236 ORTHO05D003620 1.0e-27 127.1 105 64.8
A05p41940 Brassica napus HOM05D003236 ORTHO05D003620 1.0e-27 127.1 104 60.6
BraA05t22916Z Brassica rapa HOM05D003236 ORTHO05D003620 1.0e-27 127.1 104 60.6
HanXRQChr10g0286501 Helianthus annuus HOM05D003236 ORTHO05D003620 1.0e-27 127.1 104 62.5
Prupe.6G171900 Prunus persica HOM05D003236 ORTHO05D003620 1.0e-27 127.1 104 67.3
SGA_v2.0_scaffold166G38366 Striga asiatica HOM05D003236 ORTHO05D003620 1.0e-27 127.1 107 62.6
Migut.N00158 Erythranthe guttata HOM05D003236 ORTHO05D003620 1.3e-27 126.7 105 61.9
Gohir.A05G340100 Gossypium hirsutum HOM05D003236 ORTHO05D003620 1.3e-27 126.7 104 61.5
Potri.010G191800 Populus trichocarpa HOM05D003236 ORTHO05D003620 1.3e-27 126.7 105 62.9
RcHm_v2.0_Chr6g0272861 Rosa chinensis HOM05D003236 ORTHO05D003620 1.3e-27 126.7 104 65.4
Sabra10G0147500 Salix brachista HOM05D003236 ORTHO05D003620 1.3e-27 126.7 105 62.9
HanXRQChr11g0351171 Helianthus annuus HOM05D003236 ORTHO05D003620 1.8e-27 126.3 104 62.5
Duzib187G1207 Durio zibethinus HOM05D003236 ORTHO05D003620 2.3e-27 125.9 104 62.5
Medtr3g098750 Medicago truncatula HOM05D003236 ORTHO05D003620 2.3e-27 125.9 109 65.1
Os02g0701900 Oryza sativa ssp. japonica HOM05D003236 ORTHO05D003620 2.3e-27 125.9 104 57.7
Prupe.6G197600 Prunus persica HOM05D003236 ORTHO05D003620 2.3e-27 125.9 104 66.3
MBI19_g44204_MAGBIO Magnolia biondii HOM05D003236 ORTHO05D003620 3.0e-27 125.6 106 62.3
TWI53G0183 Tripterygium wilfordii HOM05D003236 ORTHO05D003620 3.0e-27 125.6 120 59.2
EL10Ac2g04006 Beta vulgaris HOM05D003236 ORTHO05D003620 3.9e-27 125.2 105 63.8
Migut.G00306 Erythranthe guttata HOM05D003236 ORTHO05D003620 5.1e-27 124.8 112 58.9
TAR633G2542 Trochodendron aralioides HOM05D003236 ORTHO05D003620 5.1e-27 124.8 104 63.5
AL6G30650 Arabidopsis lyrata HOM05D003236 ORTHO05D003620 6.7e-27 124.4 130 56.2
Actinidia23501 Actinidia chinensis HOM05D003236 ORTHO05D003620 8.7e-27 124.0 104 59.6
AUR62009269 Chenopodium quinoa HOM05D003236 ORTHO05D003620 1.1e-26 123.6 105 62.9
PSO017G3704 Papaver somniferum HOM05D003236 ORTHO05D003620 1.1e-26 123.6 104 60.6
PSO478G0559 Papaver somniferum HOM05D003236 ORTHO05D003620 1.1e-26 123.6 104 60.6
Hma1.2p1_0995F.1_g245780 Hydrangea macrophylla HOM05D003236 ORTHO05D003620 1.5e-26 123.2 119 56.3
Rhsim04G0203500 Rhododendron simsii HOM05D003236 ORTHO05D003620 1.5e-26 123.2 105 61.0
RcHm_v2.0_Chr6g0272881 Rosa chinensis HOM05D003236 ORTHO05D003620 1.5e-26 123.2 104 64.4
Hund19506 Selenicereus undatus HOM05D003236 ORTHO05D003620 1.5e-26 123.2 105 62.9
SGA_v2.0_scaffold39G15309 Striga asiatica HOM05D003236 ORTHO05D003620 1.5e-26 123.2 109 59.6
GSVIVG01017907001 Vitis vinifera HOM05D003236 ORTHO05D003620 1.5e-26 123.2 104 62.5
AUR62042438 Chenopodium quinoa HOM05D003236 ORTHO05D003620 2.5e-26 122.5 105 61.9
BcaB08g36593 Brassica carinata HOM05D003236 ORTHO05D003620 3.3e-26 122.1 100 64.0
Rhsim02G0180400 Rhododendron simsii HOM05D003236 ORTHO05D003620 3.3e-26 122.1 105 60.0
Sp3g05010 Schrenkiella parvula HOM05D003236 ORTHO05D003620 7.4e-26 120.9 104 61.5
AT5G19200 Arabidopsis thaliana HOM05D003236 ORTHO05D003620 9.7e-26 120.6 130 54.6
Zm00001eb188220 Zea mays HOM05D003236 ORTHO05D003620 1.3e-25 120.2 104 57.7
SEGI_23586 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 3.7e-25 118.6 106 57.5
Sabra16G0185700 Salix brachista HOM05D003236 ORTHO05D003620 4.8e-25 118.2 105 59.0
COL.COLO4_20855 Corchorus olitorius HOM05D003236 ORTHO05D003620 6.3e-25 117.9 105 61.9
Zm00001eb251870 Zea mays HOM05D003236 ORTHO05D003620 6.3e-25 117.9 104 56.7
BcaC04g18588 Brassica carinata HOM05D003236 ORTHO05D003620 1.1e-24 117.1 98 62.2
C09p57040 Brassica napus HOM05D003236 ORTHO05D003620 1.1e-24 117.1 98 62.2
Aqoxy2G03298 Aquilegia oxysepala HOM05D003236 ORTHO05D003620 1.8e-24 116.3 109 56.9
RcHm_v2.0_Chr6g0272751 Rosa chinensis HOM05D003236 ORTHO05D003620 2.4e-24 115.9 104 61.5
Hund19505 Selenicereus undatus HOM05D003236 ORTHO05D003620 2.4e-24 115.9 105 60.0
Oeu030324.1 Olea europaea HOM05D003236 ORTHO05D003620 3.1e-24 115.5 73 71.2
AT3G06060 Arabidopsis thaliana HOM05D003236 ORTHO05D003620 9.0e-24 114.0 104 58.7
Carub.0006s1753 Capsella rubella HOM05D003236 ORTHO05D003620 3.4e-23 112.1 130 51.5
C05p61190 Brassica napus HOM05D003236 ORTHO05D003620 4.5e-23 111.7 104 55.8
ATR0626G169 Amborella trichopoda HOM05D003236 ORTHO05D003620 5.9e-23 111.3 105 58.1
CDE05G0037 Ceratophyllum demersum HOM05D003266 ORTHO05D003718 5.9e-23 111.3 104 55.8
Psat1g182720 Pisum sativum HOM05D003236 ORTHO05D003620 1.3e-22 110.2 80 70.0
Thecc.04G224800 Theobroma cacao HOM05D003236 ORTHO05D003620 1.3e-22 110.2 104 57.7
Gohir.D05G232700 Gossypium hirsutum HOM05D003236 ORTHO05D003620 5.0e-22 108.2 104 54.8
Gohir.A05G230300 Gossypium hirsutum HOM05D003236 ORTHO05D003620 6.5e-22 107.8 104 54.8
Thecc.04G224900 Theobroma cacao HOM05D003236 ORTHO05D003620 1.9e-21 106.3 104 55.8
COL.COLO4_05385 Corchorus olitorius HOM05D003236 ORTHO05D003620 2.5e-21 105.9 131 50.4
HanXRQChr11g0351371 Helianthus annuus HOM05D003236 ORTHO05D003620 3.2e-21 105.5 104 51.0
Mapoly0005s0172 Marchantia polymorpha HOM05D003236 ORTHO05D003620 7.2e-21 104.4 118 44.9
PSO210G7458 Papaver somniferum HOM05D003236 ORTHO05D003620 1.6e-20 103.2 105 54.3
A10p20430 Brassica napus HOM05D003236 ORTHO05D003620 2.1e-20 102.8 98 60.2
Gorai.009G240900 Gossypium raimondii HOM05D003236 ORTHO05D003620 3.6e-20 102.1 104 52.9
BolC5t34779H Brassica oleracea HOM05D003236 ORTHO05D003620 4.6e-20 101.7 104 52.9
COL.COLO4_20849 Corchorus olitorius HOM05D003236 ORTHO05D003620 6.1e-20 101.3 104 53.8
Eucgr.B01113 Eucalyptus grandis HOM05D003236 ORTHO05D003620 1.8e-19 99.8 106 49.1
PSO832G4100 Papaver somniferum HOM05D003236 ORTHO05D003620 2.3e-19 99.4 105 53.3
COL.COLO4_26632 Corchorus olitorius HOM05D003236 ORTHO05D003620 2.5e-18 95.9 120 49.2
BolC9t58571H Brassica oleracea HOM05D003236 ORTHO05D003620 3.3e-18 95.5 98 55.1
AagrBONN_evm.TU.Sc2ySwM_344.2320 Anthoceros agrestis HOM05D003236 ORTHO05D003620 5.7e-18 94.7 106 45.3
Gorai.N027600 Gossypium raimondii HOM05D003236 ORTHO05D003620 1.1e-16 90.5 104 49.0
Pp3c22_14290 Physcomitrium patens HOM05D003236 ORTHO05D003620 1.1e-16 90.5 103 44.7
Gohir.D05G232800 Gossypium hirsutum HOM05D003236 ORTHO05D003620 2.4e-16 89.4 104 48.1
Duzib114G0214 Durio zibethinus HOM05D003236 ORTHO05D003620 7.7e-15 84.3 62 61.3
Duzib199G0002 Durio zibethinus HOM05D003236 ORTHO05D003620 7.7e-15 84.3 62 61.3
CBR_g32182 Chara braunii HOM05D003236 ORTHO05D003620 6.5e-14 81.3 124 37.9
Nitab4.5_0006639g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 6.5e-14 81.3 59 62.7
HPP92_015138 Vanilla planifolia HOM05D003236 ORTHO05D003620 8.5e-14 80.9 108 42.6
COL.COLO4_00130 Corchorus olitorius HOM05D003236 ORTHO05D003620 2.5e-13 79.3 73 54.8
Gohir.A05G230350 Gossypium hirsutum HOM05D003236 ORTHO05D003620 4.2e-13 78.6 104 45.2
Nitab4.5_0010073g0020 Nicotiana tabacum HOM05D003236 ORTHO05D003620 1.2e-12 77.0 59 59.3
SMO361G0534 Selaginella moellendorffii HOM05D003236 ORTHO05D003620 1.0e-11 73.9 99 40.4
Lalb_Chr20g0118491 Lupinus albus HOM05D003236 ORTHO05D003620 1.4e-11 73.6 46 69.6
SMO361G0773 Selaginella moellendorffii HOM05D003236 ORTHO05D003620 1.4e-11 73.6 99 39.4
Cre17.g702750 Chlamydomonas reinhardtii HOM05D003236 ORTHO05D003620 5.7e-10 68.2 76 42.1
RcHm_v2.0_Chr6g0272851 Rosa chinensis HOM05D003236 ORTHO05D003620 6.3e-09 64.7 119 39.5
C03p41950 Brassica napus HOM05D003236 ORTHO05D003620 5.3e-08 61.6 37 73.0
AagrBONN_evm.TU.Sc2ySwM_228.2162 Anthoceros agrestis HOM05D003236 ORTHO05D003620 3.8e-06 55.5 82 37.8
Lsat_1_v5_gn_4_32481 Lactuca sativa HOM05D003236 ORTHO05D003620 6.5e-06 54.7 108 34.3


User provided reference genes

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