Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 0.0e+00 1294.3 632 100.0
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 0.0e+00 1118.2 632 87.8
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 0.0e+00 1113.6 632 87.7
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 9.8e-307 1056.2 632 83.5
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 1.1e-276 956.4 632 72.8
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 3.1e-276 954.9 631 72.7
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 3.8e-274 948.0 635 72.8
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 4.9e-274 947.6 636 72.6
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 3.9e-271 937.9 632 72.3
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 8.7e-271 936.8 632 71.5
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 4.0e-268 927.9 635 72.4
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 9.0e-268 926.8 632 72.0
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 3.4e-267 924.9 633 71.7
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 2.2e-266 922.2 632 71.5
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 1.1e-265 919.8 632 70.1
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 2.5e-265 918.7 632 70.3
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 2.7e-264 915.2 632 69.9
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 1.1e-262 909.8 632 69.9
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 4.3e-262 907.9 632 69.8
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 1.8e-260 902.5 632 70.1
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 2.4e-260 902.1 633 70.3
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 3.1e-260 901.7 636 70.4
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 3.4e-259 898.3 644 67.9
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 1.1e-257 893.3 632 68.5
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 1.9e-257 892.5 633 69.2
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 4.2e-257 891.3 632 69.3
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 7.2e-257 890.6 620 71.0
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 1.6e-256 889.4 640 68.3
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 6.1e-256 887.5 634 69.1
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 3.7e-253 878.2 635 68.5
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 1.5e-251 872.8 631 69.1
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 1.7e-250 869.4 631 67.4
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 5.5e-249 864.4 634 67.0
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 9.4e-249 863.6 632 67.7
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 1.2e-248 863.2 632 66.8
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 1.2e-248 863.2 637 66.6
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 1.4e-247 859.8 634 66.1
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 8.8e-247 857.1 634 66.7
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 1.7e-245 852.8 669 64.6
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 2.2e-245 852.4 632 66.3
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 6.3e-245 850.9 633 66.4
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 1.4e-244 849.7 632 66.0
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 5.3e-244 847.8 639 66.2
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 9.1e-244 847.0 635 65.8
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 1.2e-243 846.7 708 61.6
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 6.5e-242 840.9 592 69.9
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 1.0e-239 833.6 642 65.0
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 1.1e-238 830.1 633 66.7
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 7.4e-238 827.4 586 70.1
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 2.8e-237 825.5 654 63.5
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 4.5e-235 818.1 634 64.8
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.3e-234 816.6 634 64.5
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 2.9e-234 815.5 685 61.3
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 2.5e-233 812.4 634 64.0
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 1.2e-232 810.1 636 63.7
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 6.1e-232 807.7 618 64.1
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 4.4e-230 801.6 629 64.1
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 2.2e-229 799.3 624 64.6
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 8.2e-229 797.3 632 63.9
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 1.3e-226 790.0 636 61.8
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 3.6e-224 781.9 633 61.8
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 4.7e-224 781.6 632 61.2
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 1.4e-223 780.0 634 63.1
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 2.3e-223 779.2 634 61.4
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 4.0e-223 778.5 633 61.6
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 5.2e-223 778.1 573 67.2
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 1.2e-219 766.9 585 65.1
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 2.2e-218 762.7 640 60.6
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 2.2e-218 762.7 634 59.5
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 3.8e-218 761.9 634 59.5
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 2.1e-216 756.1 691 57.0
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 1.0e-215 753.8 632 61.7
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 1.2e-214 750.4 569 65.2
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 2.8e-213 745.7 632 59.7
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 6.3e-213 744.6 617 61.3
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 6.3e-213 744.6 634 58.5
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 5.9e-211 738.0 567 65.6
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 1.1e-209 733.8 635 58.6
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 3.3e-209 732.3 637 58.6
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 4.3e-209 731.9 727 53.8
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 2.1e-208 729.6 635 58.4
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 8.0e-208 727.6 638 60.3
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 1.5e-206 723.4 633 57.3
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 3.4e-206 722.2 631 56.9
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 1.8e-204 716.5 636 57.9
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 5.4e-204 714.9 635 57.8
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 2.7e-203 712.6 640 59.1
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 7.8e-203 711.1 557 64.6
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 1.3e-202 710.3 640 56.6
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 3.9e-202 708.8 523 67.3
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 3.3e-201 705.7 548 64.1
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 3.1e-199 699.1 612 60.0
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 2.0e-195 686.4 634 55.4
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 2.7e-195 686.0 655 55.0
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 7.3e-193 677.9 595 57.0
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 3.7e-160 569.3 570 53.7
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 2.5e-145 520.0 418 61.7
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 3.6e-131 473.0 648 43.1
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 9.7e-129 464.9 433 55.9
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 4.8e-120 436.0 555 45.6
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 2.1e-115 420.6 492 46.7
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 7.0e-111 405.6 640 39.1
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 1.8e-103 380.9 245 74.3
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 4.1e-87 326.6 205 76.6
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 6.8e-82 309.3 251 58.2
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 1.3e-72 278.5 270 54.4
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 9.9e-65 252.3 656 31.4
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 3.0e-61 240.7 175 64.0
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 8.4e-48 196.1 161 60.2
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.9e-39 168.3 142 59.9
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 4.8e-35 153.7 110 72.7
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 1.7e-32 145.2 81 81.5
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 3.1e-26 124.4 111 49.5
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 2.0e-25 121.7 65 80.0
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 6.3e-19 100.1 83 57.8
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 9.7e-12 76.3 44 75.0
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 2.2e-11 75.1 44 72.7
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 3.1e-10 71.2 354 22.3
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 3.5e-09 67.8 32 96.9
Nn5g28601 Nelumbo nucifera HOM05D006440 ORTHO05D003987 7.7e-09 66.6 55 50.9
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 2.2e-08 65.1 70 47.1
Eucgr.B00704 Eucalyptus grandis HOM05D000173 ORTHO05D004400 2.5e-07 61.6 309 24.9
arahy.Tifrunner.gnm1.ann1.IPBD8F Arachis hypogaea HOM05D002333 ORTHO05D003987 2.1e-06 58.5 61 50.8
Eucgr.H03129 Eucalyptus grandis HOM05D006440 ORTHO05D003987 3.6e-06 57.8 116 37.1
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 8.0e-06 56.6 31 80.6


User provided reference genes

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