Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 9.3e-218 760.0 402 100.0
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 5.2e-144 515.0 395 73.9
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 7.5e-135 484.6 393 72.3
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 4.6e-100 369.0 240 87.1
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 2.6e-71 273.5 397 43.3
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 1.1e-69 268.1 396 40.9
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 7.2e-69 265.4 393 42.5
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 3.9e-67 259.6 393 41.2
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 5.7e-66 255.8 394 40.4
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 5.3e-64 249.2 400 39.0
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 9.1e-64 248.4 398 39.7
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 2.0e-63 247.3 394 37.6
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 1.4e-61 241.1 392 39.0
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 2.5e-61 240.4 393 39.2
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 2.7e-60 236.9 394 37.6
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 2.7e-60 236.9 396 39.6
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 3.6e-60 236.5 408 37.3
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 3.6e-60 236.5 396 37.6
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 1.8e-59 234.2 396 37.6
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 3.9e-59 233.0 422 36.7
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 6.7e-59 232.3 402 42.0
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 6.7e-59 232.3 398 38.4
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 2.0e-58 230.7 401 40.9
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 7.4e-58 228.8 401 38.2
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 2.8e-57 226.9 424 35.6
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 1.4e-56 224.6 390 40.0
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 1.4e-56 224.6 424 37.7
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.8e-56 224.2 424 37.7
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.8e-56 224.2 427 36.1
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.3e-54 218.0 428 36.2
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 8.5e-54 215.3 393 35.6
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.9e-53 214.2 424 37.0
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 4.2e-53 213.0 398 36.7
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 8.0e-52 208.8 269 42.8
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 8.0e-52 208.8 356 40.7
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 1.8e-51 207.6 402 35.1
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 8.8e-51 205.3 408 35.5
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.2e-50 204.9 268 43.7
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 5.7e-50 202.6 395 34.9
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 1.8e-48 197.6 230 50.4
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 4.1e-48 196.4 236 46.6
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 1.2e-47 194.9 410 34.6
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 2.0e-47 194.1 271 42.1
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 1.3e-46 191.4 396 35.9
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 1.3e-46 191.4 377 35.0
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 2.9e-46 190.3 396 34.1
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 2.9e-46 190.3 404 34.2
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 2.5e-45 187.2 398 32.4
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 1.8e-43 181.0 405 34.8
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 1.8e-43 181.0 387 33.3
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 3.0e-43 180.3 409 31.8
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 6.8e-43 179.1 413 35.1
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 8.8e-43 178.7 401 36.4
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 8.8e-43 178.7 399 34.6
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 2.0e-42 177.6 397 34.5
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 3.4e-42 176.8 402 33.6
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 7.5e-42 175.6 391 35.0
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 9.8e-42 175.3 263 42.6
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 1.3e-41 174.9 243 43.2
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 1.3e-41 174.9 397 32.2
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 6.3e-41 172.6 396 31.1
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 4.1e-40 169.9 401 33.9
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 7.0e-40 169.1 400 32.8
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 1.2e-39 168.3 386 30.8
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 3.5e-39 166.8 395 31.9
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.0e-38 165.2 245 41.6
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 1.7e-38 164.5 378 32.8
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 2.3e-38 164.1 381 31.2
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 8.6e-38 162.2 267 43.4
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.5e-37 160.6 197 48.2
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 4.2e-37 159.8 413 31.5
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 5.5e-37 159.5 398 31.4
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 7.2e-37 159.1 379 31.9
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 2.8e-36 157.1 375 30.4
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 3.6e-36 156.8 439 28.7
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 6.1e-36 156.0 397 31.0
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 1.0e-35 155.2 245 40.4
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 1.8e-35 154.5 387 32.0
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 1.8e-35 154.5 396 31.6
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 2.3e-35 154.1 177 49.7
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 3.0e-35 153.7 380 30.8
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 3.0e-35 153.7 380 30.8
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 4.0e-35 153.3 239 39.3
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 6.8e-35 152.5 392 31.1
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 2.6e-34 150.6 259 37.5
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 2.6e-34 150.6 408 30.1
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 3.4e-34 150.2 407 29.5
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 3.4e-34 150.2 345 29.9
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 4.9e-33 146.4 221 41.6
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 4.9e-33 146.4 150 49.3
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 2.4e-32 144.1 399 29.6
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 5.4e-32 142.9 404 29.7
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.2e-31 141.7 344 30.8
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 1.6e-31 141.4 410 30.2
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.5e-31 139.8 260 37.3
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 5.9e-31 139.4 396 28.5
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 1.3e-30 138.3 405 27.7
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 1.3e-30 138.3 231 35.9
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 1.5e-29 134.8 384 29.9
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 1.5e-26 124.8 239 38.1
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 3.4e-26 123.6 244 37.3
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 2.9e-25 120.6 187 37.4
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 6.4e-25 119.4 112 49.1
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 6.4e-25 119.4 180 42.8
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 2.4e-24 117.5 407 27.8
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 4.6e-23 113.2 251 33.5
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 6.6e-22 109.4 172 39.0
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 8.6e-22 109.0 121 47.9
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 9.5e-21 105.5 277 30.0
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 3.4e-18 97.1 261 32.2
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 3.7e-17 93.6 262 31.7
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 6.4e-17 92.8 401 24.7
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 4.1e-16 90.1 107 47.7
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 5.4e-16 89.7 90 47.8
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 2.3e-14 84.3 290 27.9
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 3.9e-14 83.6 213 32.4
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 1.5e-13 81.6 103 47.6
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.4e-11 75.1 68 47.1
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 3.1e-11 73.9 396 25.5
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 7.5e-10 69.3 68 42.6
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 1.3e-09 68.6 147 33.3
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.7e-09 68.2 242 27.3
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.2e-09 67.8 71 43.7
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 3.7e-09 67.0 71 47.9
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.4e-08 65.1 114 41.2
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.2e-07 62.0 79 44.3
Eucgr.D02408 Eucalyptus grandis HOM05D005648 ORTHO05D029324 3.5e-07 60.5 88 36.4


User provided reference genes

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