Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 3724.5 1923 100.0
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 3295.8 1950 87.5
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 3155.5 2072 81.5
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 2655.9 1982 73.8
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 2112.0 1976 58.8
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 2109.7 1989 57.9
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2109.0 1986 58.6
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 2108.2 2017 57.9
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 2095.5 1991 57.6
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 2083.5 2004 57.4
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 2083.1 1996 58.5
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 2075.8 2120 55.0
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 2064.7 1968 57.5
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 2060.4 2002 57.2
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 2058.1 1994 56.1
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 2056.2 1978 57.6
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2046.2 1987 57.1
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 2041.9 1987 57.1
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2040.8 1991 56.8
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 2039.6 1992 56.7
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2038.5 1989 57.4
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 2036.2 1999 56.4
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 2029.6 1971 57.5
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2023.1 1987 57.1
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2018.8 1989 56.7
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1996.1 1951 56.5
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1991.9 1966 56.2
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1988.8 1987 55.7
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1969.5 1974 56.0
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 1935.6 1948 55.5
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 1902.5 1950 55.5
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 1888.6 1991 54.5
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 1886.3 1888 55.2
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1875.5 1997 53.1
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1875.5 2017 53.3
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 1873.6 1994 52.9
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1867.4 1972 53.2
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1865.1 1629 59.7
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1863.2 1977 53.4
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 1859.7 1887 55.1
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 1852.4 1984 53.3
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1851.3 1912 55.6
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1850.9 1934 54.9
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1846.6 1552 61.6
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1845.5 2035 52.1
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 1845.1 1860 55.8
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 1841.6 2021 52.5
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1840.1 1827 55.3
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1832.4 1542 61.3
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1831.6 1853 55.4
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 1830.5 1847 55.4
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1803.1 2018 51.5
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1788.1 1907 54.2
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1785.8 2007 52.2
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1778.5 2014 51.6
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1743.0 1974 51.3
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1740.3 1981 51.2
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1737.6 1975 51.5
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1736.9 1959 51.5
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1735.3 1977 51.4
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1735.3 2106 49.3
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1733.0 1838 52.4
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1724.5 1814 52.7
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1724.1 1836 52.7
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1723.8 1837 52.2
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1718.4 2024 50.4
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1716.4 2007 50.0
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1714.9 2110 49.8
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1712.6 1826 52.8
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1690.6 1904 50.8
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1689.1 1485 59.7
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1665.6 1981 49.6
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1647.5 2021 48.5
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1645.6 1871 51.4
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1641.7 1877 50.1
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1628.2 1887 49.8
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1624.4 2062 47.7
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1623.2 1579 54.0
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1614.4 1701 54.1
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1582.0 1335 61.6
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1575.5 1888 48.1
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1568.9 1879 49.1
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1551.6 1864 48.7
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1547.3 1921 47.2
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1541.6 1860 47.6
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1540.0 1922 47.2
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1523.1 1881 46.7
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1522.3 1864 47.5
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1507.7 1840 48.2
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1506.9 1856 48.9
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1506.9 1856 48.9
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1506.5 2005 46.5
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1504.6 1928 45.9
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1485.7 1762 48.2
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1482.2 1970 45.9
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1464.9 1847 46.3
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1457.2 1481 52.6
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1424.8 1251 60.0
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1422.5 1847 45.8
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1324.3 1165 60.4
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 4.6e-291 1005.7 1608 38.7
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 6.7e-290 1001.9 1672 37.4
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 7.9e-283 978.4 1127 51.9
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 1.7e-272 944.1 1962 34.4
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 9.1e-271 938.3 945 54.6
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 2.6e-270 936.8 1703 36.2
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 9.4e-268 928.3 1883 35.3
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 2.2e-264 917.1 1835 35.5
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 8.3e-256 888.6 1005 53.5
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 2.7e-254 883.6 1173 46.0
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 3.2e-247 860.1 900 52.4
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 3.6e-235 820.1 1078 45.0
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 4.7e-235 819.7 1109 47.5
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 6.4e-224 782.7 1044 44.4
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 2.3e-197 694.5 1412 33.4
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 8.1e-195 686.0 1790 29.5
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.2e-185 655.6 573 59.2
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 5.9e-161 573.5 1158 34.5
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 9.4e-159 566.2 548 55.3
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 2.1e-158 565.1 472 62.3
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 1.5e-143 515.8 826 42.3
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 9.5e-135 486.5 558 47.8
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 2.4e-130 471.9 710 46.6
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.0e-128 466.5 667 41.4
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 5.0e-128 464.2 560 44.3
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.1e-117 429.9 548 44.7
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 1.9e-79 302.8 270 58.1
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 2.3e-64 252.7 372 41.1
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 5.1e-64 251.5 464 35.3
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 6.1e-57 228.0 252 46.8
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 8.2e-54 217.6 379 38.3
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.4e-53 216.9 572 31.3
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 1.6e-49 203.4 695 29.9
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 9.4e-42 177.6 395 34.9
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 3.2e-34 152.5 324 34.9
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 9.4e-34 151.0 224 38.8
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 6.8e-32 144.8 164 45.7
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 2.2e-30 139.8 163 44.8
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 5.9e-28 131.7 111 64.9
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 1.3e-27 130.6 164 41.5
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 2.9e-27 129.4 1310 21.5
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 1.1e-26 127.5 135 49.6
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 5.5e-26 125.2 121 57.9
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.6e-25 123.6 80 71.2
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 6.1e-25 121.7 85 72.9
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 4.4e-23 115.5 94 66.0
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.4e-21 110.5 143 44.8
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 3.1e-21 109.4 178 37.1
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 2.0e-20 106.7 406 26.8
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 7.8e-20 104.8 346 27.7
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 2.9e-19 102.8 141 46.1
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 3.0e-16 92.8 226 32.3
FAN07G2918 Fragaria x ananassa HOM05D004392 ORTHO05D004846 2.9e-14 86.3 79 63.3
FvH4_7g01070 Fragaria vesca HOM05D011336 ORTHO05D017014 4.1e-13 82.4 91 56.0
FAN06G3220 Fragaria x ananassa HOM05D011336 ORTHO05D017014 1.2e-12 80.9 155 45.2
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 3.5e-12 79.3 56 67.9
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 3.0e-11 76.3 55 65.5
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.6e-09 70.5 71 50.7
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 3.6e-09 69.3 70 52.9
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 4.7e-09 68.9 173 31.2
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 5.8e-07 62.0 59 54.2
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 5.8e-07 62.0 126 34.1


User provided reference genes

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