Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 2.6e-158 562.0 285 100.0
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 5.4e-111 404.8 288 76.7
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 1.8e-90 336.7 287 66.2
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 1.0e-77 294.3 184 82.6
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 2.4e-74 283.1 285 57.2
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 6.9e-74 281.6 290 57.6
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 3.8e-72 275.8 246 59.3
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 3.8e-72 275.8 246 59.3
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 8.4e-72 274.6 275 59.3
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.1e-71 274.2 268 57.1
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 2.4e-71 273.1 242 59.5
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 5.4e-71 271.9 286 57.0
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 2.7e-70 269.6 260 59.2
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 7.8e-70 268.1 265 55.8
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 1.3e-69 267.3 244 61.1
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 1.7e-69 266.9 241 58.5
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 3.0e-69 266.2 266 56.4
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 1.1e-68 264.2 247 57.5
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 1.5e-68 263.8 262 57.6
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 1.5e-68 263.8 240 60.4
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 1.9e-68 263.5 258 54.7
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 3.3e-68 262.7 240 60.4
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 7.3e-68 261.5 253 56.5
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 2.1e-67 260.0 277 55.6
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 2.1e-67 260.0 240 60.0
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 4.8e-67 258.8 267 55.8
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 2.4e-66 256.5 266 55.3
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 3.1e-66 256.1 270 55.9
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 3.1e-66 256.1 245 55.5
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 6.9e-66 255.0 249 55.4
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 6.9e-66 255.0 259 53.3
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 9.0e-66 254.6 268 54.9
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 2.6e-65 253.1 246 55.7
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 3.4e-65 252.7 268 53.4
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 4.5e-65 252.3 240 55.0
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 2.9e-64 249.6 248 56.0
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 4.2e-63 245.7 253 56.1
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 7.1e-63 245.0 281 50.9
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 2.1e-62 243.4 268 52.6
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 2.1e-62 243.4 292 47.6
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 3.5e-62 242.7 272 52.2
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 4.6e-62 242.3 263 51.0
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 6.0e-62 241.9 274 51.5
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 7.9e-62 241.5 255 53.7
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 1.0e-61 241.1 263 54.0
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 2.3e-61 240.0 258 52.7
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 3.9e-61 239.2 241 53.9
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 8.7e-61 238.0 247 54.3
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 8.7e-61 238.0 255 52.2
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 8.7e-61 238.0 274 50.4
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 1.1e-60 237.7 253 51.0
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 1.9e-60 236.9 264 51.5
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.3e-59 234.2 264 52.7
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 2.1e-59 233.4 261 52.9
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 2.8e-59 233.0 256 50.0
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 2.8e-59 233.0 270 50.7
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 2.8e-59 233.0 261 51.3
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 1.4e-58 230.7 247 51.0
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 3.1e-58 229.6 244 50.8
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 4.0e-58 229.2 258 51.6
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 6.9e-58 228.4 258 48.1
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 1.5e-57 227.3 251 52.2
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 2.0e-57 226.9 242 51.2
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 7.6e-57 224.9 244 49.6
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 9.9e-57 224.6 241 49.4
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 1.3e-56 224.2 247 48.6
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 1.7e-56 223.8 247 49.8
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 2.2e-56 223.4 241 48.5
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 1.4e-55 220.7 241 47.7
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 1.4e-55 220.7 241 47.7
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 1.4e-55 220.7 249 49.0
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 1.9e-55 220.3 241 49.4
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 3.2e-55 219.5 241 48.1
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 5.5e-55 218.8 263 47.5
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 7.1e-55 218.4 241 47.7
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 9.3e-55 218.0 270 47.4
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 2.3e-53 213.4 245 47.3
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 3.9e-53 212.6 286 44.8
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 2.4e-50 203.4 261 46.0
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 5.3e-50 202.2 261 46.0
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 1.5e-49 200.7 179 58.1
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 2.2e-48 196.8 335 38.8
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 1.9e-44 183.7 202 53.5
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 3.3e-44 183.0 256 42.6
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 9.7e-44 181.4 240 44.2
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 2.8e-43 179.9 265 41.9
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 4.8e-43 179.1 459 30.7
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 9.0e-42 174.9 258 42.6
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 4.5e-41 172.6 211 47.4
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 6.5e-40 168.7 179 57.0
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 2.7e-38 163.3 241 38.2
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 3.6e-38 162.9 258 38.8
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 1.8e-37 160.6 147 56.5
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 3.9e-37 159.5 242 37.2
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 2.8e-35 153.3 199 49.7
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 3.1e-34 149.8 241 35.7
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 1.2e-33 147.9 254 38.6
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 2.9e-32 143.3 178 42.1
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 8.5e-32 141.7 243 35.4
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 2.3e-29 133.7 201 41.8
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 3.9e-29 132.9 150 46.7
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 7.7e-25 118.6 184 40.2
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 1.1e-20 104.8 124 46.0
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 2.2e-19 100.5 164 34.1
ECA238G4657 Erigeron canadensis HOM05D006295 ORTHO05D008061 2.2e-11 73.9 89 43.8
PRCOL_00001636 Prasinoderma coloniale HOM05D007345 ORTHO05D009277 1.6e-09 67.8 55 52.7
Hund22393 Selenicereus undatus HOM05D007345 ORTHO05D009277 1.9e-07 60.8 44 65.9


User provided reference genes

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