Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G011130 Citrullus lanatus HOM05D004946 ORTHO05D006101 5.5e-205 717.6 417 100.0
MELO3C002087.2 Cucumis melo HOM05D004946 ORTHO05D006101 1.6e-167 593.2 419 83.3
CsaV3_1G006630 Cucumis sativus L. HOM05D004946 ORTHO05D006101 6.5e-166 587.8 419 83.3
Sed0008793 Sechium edule HOM05D004946 ORTHO05D006101 3.8e-105 386.0 323 68.4
Atru.chr9.855 Acer truncatum HOM05D004946 ORTHO05D006101 2.3e-94 350.1 421 53.4
MD14G1227000 Malus domestica HOM05D004946 ORTHO05D006101 1.5e-93 347.4 420 54.8
Prupe.5G221700 Prunus persica HOM05D004946 ORTHO05D006101 2.1e-92 343.6 420 52.4
Haze_18683 Corylus avellana HOM05D004946 ORTHO05D006101 8.5e-89 331.6 419 50.4
FAN08G1246 Fragaria x ananassa HOM05D004946 ORTHO05D006101 2.5e-88 330.1 418 51.9
FvH4_5g12080 Fragaria vesca HOM05D004946 ORTHO05D006101 5.5e-88 328.9 418 51.9
FAN18G3139 Fragaria x ananassa HOM05D004946 ORTHO05D006101 2.1e-87 327.0 418 51.7
FAN18G2620 Fragaria x ananassa HOM05D004946 ORTHO05D006101 6.7e-86 322.0 418 51.2
Cfa019764 Carpinus fangiana HOM05D004946 ORTHO05D006101 7.4e-85 318.5 402 50.0
RcHm_v2.0_Chr7g0185491 Rosa chinensis HOM05D004946 ORTHO05D006101 2.6e-82 310.1 418 49.5
FAN04G0770 Fragaria x ananassa HOM05D004946 ORTHO05D006101 1.3e-81 307.8 418 50.5
Thecc.03G035700 Theobroma cacao HOM05D004946 ORTHO05D006101 3.8e-81 306.2 422 49.3
QL10p025417 Quercus lobata HOM05D004946 ORTHO05D006101 1.6e-79 300.8 419 47.3
Potri.012G056200 Populus trichocarpa HOM05D004946 ORTHO05D006101 3.6e-79 299.7 420 48.6
Dinv15680 Davidia involucrata HOM05D004946 ORTHO05D006101 1.8e-78 297.4 431 48.3
Dinv28107 Davidia involucrata HOM05D004946 ORTHO05D006101 1.5e-77 294.3 420 51.7
FAN13G1851 Fragaria x ananassa HOM05D004946 ORTHO05D006101 1.3e-76 291.2 418 49.0
Duzib084G0074 Durio zibethinus HOM05D004946 ORTHO05D006101 1.7e-76 290.8 423 48.7
Manes.01G011100 Manihot esculenta HOM05D004946 ORTHO05D006101 2.4e-75 287.0 424 51.7
CiPaw.16G086800 Carya illinoinensis HOM05D004946 ORTHO05D006101 1.9e-72 277.3 420 48.1
Gohir.D08G105600 Gossypium hirsutum HOM05D004946 ORTHO05D006101 9.4e-72 275.0 424 47.9
Ciclev10020493m.g Citrus clementina HOM05D004946 ORTHO05D006101 3.6e-71 273.1 419 46.5
Gorai.006G060600 Gossypium raimondii HOM05D004946 ORTHO05D006101 6.1e-71 272.3 422 46.9
Medtr8g104260 Medicago truncatula HOM05D004946 ORTHO05D006101 1.4e-70 271.2 419 44.4
Gohir.D09G049200 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.8e-70 270.8 422 46.7
Actinidia18931 Actinidia chinensis HOM05D004946 ORTHO05D006101 3.0e-70 270.0 422 46.0
TWI15G0834 Tripterygium wilfordii HOM05D004946 ORTHO05D006101 4.4e-69 266.2 428 47.2
Glyma.10G040800 Glycine max HOM05D004946 ORTHO05D006101 2.0e-66 257.3 419 44.9
CANSAT80G1182 Cannabis sativa HOM05D004946 ORTHO05D006101 3.5e-66 256.5 421 45.1
PGR044G1576 Punica granatum HOM05D004946 ORTHO05D006101 3.5e-66 256.5 423 45.9
Gorai.004G113500 Gossypium raimondii HOM05D004946 ORTHO05D006101 2.2e-65 253.8 422 48.1
VMungo0720G2584 Vigna mungo HOM05D004946 ORTHO05D006101 2.9e-65 253.4 419 43.4
arahy.Tifrunner.gnm1.ann1.G56NCJ Arachis hypogaea HOM05D004946 ORTHO05D006101 3.8e-65 253.1 419 44.2
Lalb_Chr09g0331081 Lupinus albus HOM05D004946 ORTHO05D006101 6.5e-65 252.3 418 42.6
Lalb_Chr05g0222491 Lupinus albus HOM05D004946 ORTHO05D006101 8.5e-65 251.9 424 43.9
Psat7g010600 Pisum sativum HOM05D004946 ORTHO05D006101 1.9e-64 250.8 420 45.5
COL.COLO4_11303 Corchorus olitorius HOM05D004946 ORTHO05D006101 3.2e-64 250.0 395 47.8
arahy.Tifrunner.gnm1.ann1.94ZJ0E Arachis hypogaea HOM05D004946 ORTHO05D006101 1.6e-63 247.7 419 43.9
Hma1.2p1_2409F.1_g321510 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 2.7e-63 246.9 442 44.1
arahy.Tifrunner.gnm1.ann1.N3S6I2 Arachis hypogaea HOM05D004946 ORTHO05D006101 6.1e-63 245.7 419 42.7
Eucgr.K02226 Eucalyptus grandis HOM05D004946 ORTHO05D006101 6.1e-63 245.7 437 44.2
MSTRG.11071 Avicennia marina HOM05D004946 ORTHO05D006101 1.0e-62 245.0 425 45.2
CSS0004173 Camellia sinensis var. sinensis HOM05D004946 ORTHO05D006101 1.4e-62 244.6 440 43.6
arahy.Tifrunner.gnm1.ann1.X2WJJP Arachis hypogaea HOM05D004946 ORTHO05D006101 4.4e-61 239.6 415 42.7
TPR.G32702 Trifolium pratense HOM05D004946 ORTHO05D006101 1.4e-59 234.6 420 42.4
Ca_25442_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 2.4e-59 233.8 418 44.3
Sc12g0007670 Simmondsia chinensis HOM05D004946 ORTHO05D006101 3.1e-59 233.4 420 43.1
Lj4g0022250 Lotus japonicus HOM05D004946 ORTHO05D006101 1.6e-58 231.1 423 41.1
Oeu064714.1 Olea europaea HOM05D004946 ORTHO05D006101 1.3e-57 228.0 426 43.4
Phvul.007G154000 Phaseolus vulgaris HOM05D004946 ORTHO05D006101 1.7e-57 227.6 418 43.5
Cc04_g07080 Coffea canephora HOM05D004946 ORTHO05D006101 6.5e-57 225.7 427 44.5
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 4.2e-56 223.0 400 45.8
PGSC0003DMG401005635 Solanum tuberosum HOM05D004946 ORTHO05D006101 5.5e-56 222.6 414 42.8
Sopen03g038310 Solanum pennellii HOM05D004946 ORTHO05D006101 1.2e-55 221.5 414 42.5
HPP92_004811 Vanilla planifolia HOM05D004946 ORTHO05D006101 1.2e-55 221.5 418 41.6
Nitab4.5_0000208g0330 Nicotiana tabacum HOM05D004946 ORTHO05D006101 3.0e-54 216.9 429 41.7
Gohir.A08G095000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 5.7e-53 212.6 333 47.1
Sabra12G0039900 Salix brachista HOM05D004946 ORTHO05D006101 2.8e-52 210.3 456 38.6
Aqoxy3G00287 Aquilegia oxysepala HOM05D004946 ORTHO05D006101 1.4e-51 208.0 416 41.1
Hma1.2p1_0701F.1_g205890 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 2.4e-51 207.2 335 46.3
Oeu056801.1 Olea europaea HOM05D004946 ORTHO05D006101 3.1e-51 206.8 424 42.2
Actinidia35090 Actinidia chinensis HOM05D004946 ORTHO05D006101 7.7e-50 202.2 347 42.1
A07p29630 Brassica napus HOM05D004946 ORTHO05D006101 2.5e-48 197.2 423 39.5
BraA07t30604Z Brassica rapa HOM05D004946 ORTHO05D006101 2.5e-48 197.2 427 41.7
BcaC08g45619 Brassica carinata HOM05D004946 ORTHO05D006101 3.2e-48 196.8 425 39.1
Nitab4.5_0012710g0020 Nicotiana tabacum HOM05D004946 ORTHO05D006101 3.2e-48 196.8 429 39.9
Nn4g23854 Nelumbo nucifera HOM05D004946 ORTHO05D006101 4.2e-48 196.4 423 42.3
CAN.G1889.4 Capsicum annuum HOM05D004946 ORTHO05D006101 1.6e-47 194.5 419 39.4
CARHR066930 Cardamine hirsuta HOM05D004946 ORTHO05D006101 2.1e-47 194.1 426 40.4
BolC6t38494H Brassica oleracea HOM05D004946 ORTHO05D006101 6.1e-47 192.6 425 40.0
BcaB03g15098 Brassica carinata HOM05D004946 ORTHO05D006101 8.0e-47 192.2 432 39.4
C06p33810 Brassica napus HOM05D004946 ORTHO05D006101 1.8e-46 191.0 425 39.5
Nn3g17855 Nelumbo nucifera HOM05D004946 ORTHO05D006101 1.8e-46 191.0 427 39.3
SGA_v2.0_scaffold5G02571 Striga asiatica HOM05D004946 ORTHO05D006101 4.0e-46 189.9 431 43.4
PSO478G0599 Papaver somniferum HOM05D004946 ORTHO05D006101 8.9e-46 188.7 421 40.4
Gohir.A09G048000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.5e-45 188.0 334 43.1
Sp5g29040 Schrenkiella parvula HOM05D004946 ORTHO05D006101 1.5e-45 188.0 432 39.1
ECA238G2506 Erigeron canadensis HOM05D004946 ORTHO05D006101 2.6e-45 187.2 417 42.2
BcaB03g15731 Brassica carinata HOM05D004946 ORTHO05D006101 3.4e-45 186.8 428 38.8
Migut.I00881 Erythranthe guttata HOM05D004946 ORTHO05D006101 5.7e-45 186.0 446 40.1
vmacro16446 Vaccinium macrocarpon HOM05D004946 ORTHO05D006101 9.8e-45 185.3 433 38.8
unitig_8.g3895 Utricularia gibba HOM05D004946 ORTHO05D006101 3.1e-43 180.3 422 38.6
PSO017G0469 Papaver somniferum HOM05D004946 ORTHO05D006101 1.2e-42 178.3 424 39.4
Peaxi162Scf00015g01034 Petunia axillaris HOM05D004946 ORTHO05D006101 1.2e-42 178.3 382 38.0
BraA07t31519Z Brassica rapa HOM05D004946 ORTHO05D006101 4.5e-42 176.4 425 40.2
BcaB03g15093 Brassica carinata HOM05D004946 ORTHO05D006101 1.3e-41 174.9 424 38.4
C06p47990 Brassica napus HOM05D004946 ORTHO05D006101 1.3e-41 174.9 424 38.4
Nitab4.5_0009306g0010 Nicotiana tabacum HOM05D004946 ORTHO05D006101 2.3e-41 174.1 389 38.8
Aa31LG4G4160 Aethionema arabicum HOM05D004946 ORTHO05D006101 5.0e-41 172.9 451 36.6
AL2G33660 Arabidopsis lyrata HOM05D004946 ORTHO05D006101 1.5e-40 171.4 444 39.0
BcaB03g15090 Brassica carinata HOM05D004946 ORTHO05D006101 1.5e-40 171.4 425 37.6
HPP92_004808 Vanilla planifolia HOM05D004946 ORTHO05D006101 1.9e-40 171.0 381 38.6
AT1G73840 Arabidopsis thaliana HOM05D004946 ORTHO05D006101 9.5e-40 168.7 427 38.4
A07p39700 Brassica napus HOM05D004946 ORTHO05D006101 9.5e-40 168.7 425 40.0
Ca_25456_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 2.8e-39 167.2 315 41.3
Rhsim12G0143100 Rhododendron simsii HOM05D004946 ORTHO05D006101 3.6e-39 166.8 449 37.9
Nitab4.5_0000974g0090 Nicotiana tabacum HOM05D004946 ORTHO05D006101 8.0e-39 165.6 424 37.7
CDE02G4219 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 3.0e-38 163.7 434 37.3
HanXRQChr06g0184711 Helianthus annuus HOM05D004946 ORTHO05D006101 6.8e-38 162.5 435 37.2
Carub.0002s2060 Capsella rubella HOM05D004946 ORTHO05D006101 1.5e-37 161.4 435 37.7
Glyma.08G041600 Glycine max HOM05D004946 ORTHO05D006101 7.5e-37 159.1 331 39.0
Thhalv10018702m.g Eutrema salsugineum HOM05D004946 ORTHO05D006101 1.3e-36 158.3 429 36.6
GSVIVG01008293001 Vitis vinifera HOM05D004946 ORTHO05D006101 1.8e-35 154.5 423 35.2
Ah.11g048200 Amaranthus hybridus HOM05D004946 ORTHO05D006101 2.4e-35 154.1 423 38.1
AUR62038115 Chenopodium quinoa HOM05D004946 ORTHO05D006101 1.6e-34 151.4 302 39.4
AUR62008463 Chenopodium quinoa HOM05D004946 ORTHO05D006101 2.0e-34 151.0 302 39.1
Peaxi162Scf00634g00318 Petunia axillaris HOM05D004946 ORTHO05D006101 1.0e-33 148.7 330 37.3
THA.LOC104812144 Tarenaya hassleriana HOM05D004946 ORTHO05D006101 1.0e-33 148.7 422 35.3
GSVIVG01008294001 Vitis vinifera HOM05D004946 ORTHO05D006101 3.9e-33 146.7 403 35.5
AUR62021632 Chenopodium quinoa HOM05D004946 ORTHO05D006101 8.6e-33 145.6 302 38.4
Cpa.g.sc3.508 Carica papaya HOM05D004946 ORTHO05D006101 1.8e-30 137.9 186 49.5
Solyc03g119460.4 Solanum lycopersicum HOM05D004946 ORTHO05D006101 8.9e-30 135.6 414 33.1
DCAR_023206 Daucus carota HOM05D004946 ORTHO05D006101 2.6e-29 134.0 329 38.9
EL10Ac5g11063 Beta vulgaris HOM05D004946 ORTHO05D006101 1.1e-27 128.6 273 39.2
Gohir.D11G132850 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.4e-27 128.3 184 48.9
Glyma.05G234300 Glycine max HOM05D004946 ORTHO05D006101 7.0e-27 125.9 326 35.0
Gohir.D05G109701 Gossypium hirsutum HOM05D004946 ORTHO05D006101 7.0e-27 125.9 184 48.4
Zm00001eb292700 Zea mays HOM05D004946 ORTHO05D006101 2.7e-26 124.0 428 33.2
Lsat_1_v5_gn_2_12261 Lactuca sativa HOM05D004946 ORTHO05D006101 5.0e-25 119.8 419 37.5
Ca_15108_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 1.1e-24 118.6 159 47.8
ATR1125G052 Amborella trichopoda HOM05D004946 ORTHO05D006101 6.2e-23 112.8 418 34.4
BcaB03g15096 Brassica carinata HOM05D004946 ORTHO05D006101 1.8e-22 111.3 354 33.6
BcaNung06927 Brassica carinata HOM05D004946 ORTHO05D006101 4.0e-22 110.2 169 47.9
Gohir.D08G202000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 8.9e-22 109.0 131 57.3
Gohir.A08G094762 Gossypium hirsutum HOM05D004946 ORTHO05D006101 3.5e-18 97.1 65 78.5
CANSAT80G2575 Cannabis sativa HOM05D004946 ORTHO05D006101 1.0e-17 95.5 57 84.2
SGA_v2.0_scaffold37G14831 Striga asiatica HOM05D004946 ORTHO05D006101 1.7e-17 94.7 367 33.0
CDE06G1062 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 9.5e-16 89.0 270 34.1
FvH4_3g36821 Fragaria vesca HOM05D004946 ORTHO05D006101 1.8e-14 84.7 53 84.9
Pp3c14_13370 Physcomitrium patens HOM05D004266 ORTHO05D005151 4.0e-14 83.6 425 30.6
BolC6t39834H Brassica oleracea HOM05D004946 ORTHO05D006101 2.2e-12 77.8 228 35.5
Gohir.A11G277050 Gossypium hirsutum HOM05D004946 ORTHO05D006101 4.9e-12 76.6 87 58.6
Gorai.009G260200 Gossypium raimondii HOM05D004266 ORTHO05D005151 8.4e-12 75.9 425 28.0
Gohir.A05G247600 Gossypium hirsutum HOM05D004266 ORTHO05D005151 1.4e-11 75.1 426 27.9
arahy.Tifrunner.gnm1.ann1.BJW38K Arachis hypogaea HOM05D004266 ORTHO05D005151 1.9e-11 74.7 419 27.2
arahy.Tifrunner.gnm1.ann1.XP62BS Arachis hypogaea HOM05D004266 ORTHO05D005151 3.2e-11 73.9 419 27.9
DCAR_015143 Daucus carota HOM05D004946 ORTHO05D006101 3.2e-11 73.9 324 29.3
SEGI_28516 Sequoiadendron giganteum HOM05D004946 ORTHO05D006101 7.1e-11 72.8 43 81.4
Glyma.13G127700 Glycine max HOM05D004946 ORTHO05D006101 9.2e-11 72.4 123 44.7
PSO170G4898 Papaver somniferum HOM05D004266 ORTHO05D005151 9.2e-11 72.4 429 26.3
CDE06G2845 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 3.5e-10 70.5 85 52.9
Gohir.D05G249100 Gossypium hirsutum HOM05D004266 ORTHO05D005151 4.6e-10 70.1 423 27.7
PSO210G1751 Papaver somniferum HOM05D004266 ORTHO05D005151 7.8e-10 69.3 434 26.0
TAR625G1274 Trochodendron aralioides HOM05D004266 ORTHO05D005151 1.0e-09 68.9 430 27.2
Duzib211G0120 Durio zibethinus HOM05D004266 ORTHO05D005151 2.3e-09 67.8 412 27.9
Mapoly0070s0034 Marchantia polymorpha HOM05D004266 ORTHO05D005151 2.3e-09 67.8 56 66.1
CSS0048022 Camellia sinensis var. sinensis HOM05D004266 ORTHO05D005151 6.6e-09 66.2 427 26.9
Manes.02G186700 Manihot esculenta HOM05D004266 ORTHO05D005151 8.7e-09 65.9 431 26.0
MBI02_g11379_MAGBIO Magnolia biondii HOM05D004946 ORTHO05D006101 1.1e-08 65.5 184 35.3
Sabra02G0049600 Salix brachista HOM05D004266 ORTHO05D005151 2.5e-08 64.3 422 28.0
Thecc.08G196800 Theobroma cacao HOM05D004266 ORTHO05D005151 5.6e-08 63.2 428 27.3
PSO339G2267 Papaver somniferum HOM05D004266 ORTHO05D005151 7.3e-08 62.8 412 25.2
QL02p035395 Quercus lobata HOM05D004266 ORTHO05D005151 9.6e-08 62.4 424 25.9
Os05g0513300 Oryza sativa ssp. japonica HOM05D004946 ORTHO05D006101 1.2e-07 62.0 261 30.3
Cfa018249 Carpinus fangiana HOM05D004266 ORTHO05D005151 2.1e-07 61.2 419 26.3
PSO339G5784 Papaver somniferum HOM05D004266 ORTHO05D005151 2.1e-07 61.2 411 25.1
CBR_g33965 Chara braunii HOM05D004266 ORTHO05D005151 2.8e-07 60.8 55 60.0
Ciclev10000749m.g Citrus clementina HOM05D004266 ORTHO05D005151 2.8e-07 60.8 422 26.5
Rhsim11G0089600 Rhododendron simsii HOM05D004266 ORTHO05D005151 2.8e-07 60.8 411 28.7
Lj5g0009681 Lotus japonicus HOM05D004266 ORTHO05D005151 4.7e-07 60.1 423 27.2
PGR042G2606 Punica granatum HOM05D004266 ORTHO05D005151 4.7e-07 60.1 413 26.4
MELO3C019953.2 Cucumis melo HOM05D004266 ORTHO05D005151 1.1e-06 58.9 432 27.3
TAR381G0928 Trochodendron aralioides HOM05D000446 ORTHO05D005151 1.4e-06 58.5 456 28.1
Dinv36591 Davidia involucrata HOM05D000943 ORTHO05D005151 3.1e-06 57.4 428 24.1
Duzib116G0903 Durio zibethinus HOM05D004266 ORTHO05D005151 5.2e-06 56.6 412 25.2
Os05g0513350 Oryza sativa ssp. japonica HOM05D004946 ORTHO05D006101 5.2e-06 56.6 38 73.7
CANSAT25G1166 Cannabis sativa HOM05D004266 ORTHO05D005151 6.9e-06 56.2 416 25.7
Os11g0176100 Oryza sativa ssp. japonica HOM05D004266 ORTHO05D005151 6.9e-06 56.2 418 26.8


User provided reference genes

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