Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G011100 Citrullus lanatus HOM05D000194 ORTHO05D000069 8.8e-93 343.6 171 100.0
ClCG00G003770 Citrullus lanatus HOM05D000194 ORTHO05D000069 2.4e-90 335.5 167 99.4
ClCG04G011110 Citrullus lanatus HOM05D000194 ORTHO05D000069 2.4e-90 335.5 167 99.4
CsaV3_1G006650 Cucumis sativus L. HOM05D000194 ORTHO05D000069 3.4e-60 235.3 177 75.7
MELO3C002089.2 Cucumis melo HOM05D000194 ORTHO05D000069 1.1e-58 230.3 177 76.3
Sed0003130 Sechium edule HOM05D000194 ORTHO05D000069 1.6e-49 199.9 172 67.4
Thecc.03G036700 Theobroma cacao HOM05D000194 ORTHO05D000069 5.4e-26 121.7 180 47.2
Dinv15686 Davidia involucrata HOM05D000194 ORTHO05D000069 6.7e-24 114.8 179 45.8
Dinv28113 Davidia involucrata HOM05D000194 ORTHO05D000069 1.5e-23 113.6 177 45.8
Lj2g0012749 Lotus japonicus HOM05D000194 ORTHO05D000069 9.6e-23 110.9 181 44.2
CiPaw.15G131600 Carya illinoinensis HOM05D000194 ORTHO05D000069 2.8e-22 109.4 183 44.3
Phvul.004G156176 Phaseolus vulgaris HOM05D000194 ORTHO05D000069 2.8e-22 109.4 182 45.6
VMungo0464G0895 Vigna mungo HOM05D000194 ORTHO05D000069 2.8e-22 109.4 182 45.6
CiPaw.16G087200 Carya illinoinensis HOM05D000194 ORTHO05D000069 3.7e-22 109.0 185 42.7
Glyma.09G183500 Glycine max HOM05D000194 ORTHO05D000069 4.8e-22 108.6 182 44.5
Lalb_Chr22g0353131 Lupinus albus HOM05D000194 ORTHO05D000069 4.8e-22 108.6 167 45.5
Prupe.5G222200 Prunus persica HOM05D000194 ORTHO05D000069 4.8e-22 108.6 190 41.6
Glyma.07G092700 Glycine max HOM05D000194 ORTHO05D000069 6.2e-22 108.2 181 45.9
GSVIVG01008299001 Vitis vinifera HOM05D000194 ORTHO05D000069 1.1e-21 107.5 178 43.3
Potri.012G055700 Populus trichocarpa HOM05D000194 ORTHO05D000069 1.8e-21 106.7 178 40.4
Cfa019757 Carpinus fangiana HOM05D000194 ORTHO05D000069 3.1e-21 105.9 175 45.1
Duzib068G0210 Durio zibethinus HOM05D000194 ORTHO05D000069 4.0e-21 105.5 180 42.2
TPR.G15174 Trifolium pratense HOM05D000194 ORTHO05D000069 1.2e-20 104.0 177 42.4
Actinidia20625 Actinidia chinensis HOM05D000194 ORTHO05D000069 3.4e-20 102.4 174 44.8
DCAR_011357 Daucus carota HOM05D000194 ORTHO05D000069 7.6e-20 101.3 178 41.6
Glyma.05G234500 Glycine max HOM05D000194 ORTHO05D000069 7.6e-20 101.3 168 43.5
Sabra12G0039300 Salix brachista HOM05D000194 ORTHO05D000069 1.3e-19 100.5 180 41.1
Phvul.002G316900 Phaseolus vulgaris HOM05D000194 ORTHO05D000069 3.8e-19 99.0 167 43.1
QL10p025550 Quercus lobata HOM05D000194 ORTHO05D000069 3.8e-19 99.0 182 41.8
TWI81G0093 Tripterygium wilfordii HOM05D000194 ORTHO05D000069 4.9e-19 98.6 179 43.0
Medtr6g084120 Medicago truncatula HOM05D000194 ORTHO05D000069 8.4e-19 97.8 179 41.3
Manes.05G113988 Manihot esculenta HOM05D000194 ORTHO05D000069 2.5e-18 96.3 181 43.6
Haze_18691 Corylus avellana HOM05D000194 ORTHO05D000069 4.2e-18 95.5 175 42.3
Glyma.08G042000 Glycine max HOM05D000194 ORTHO05D000069 4.2e-18 95.5 171 43.9
COL.COLO4_37877 Corchorus olitorius HOM05D000194 ORTHO05D000069 5.5e-18 95.1 187 39.6
RcHm_v2.0_Chr7g0185551 Rosa chinensis HOM05D000194 ORTHO05D000069 5.5e-18 95.1 186 38.7
VMungo0251G3110 Vigna mungo HOM05D000194 ORTHO05D000069 1.2e-17 94.0 167 44.3
Glyma.14G102200 Glycine max HOM05D000194 ORTHO05D000069 1.6e-17 93.6 178 42.1
FAN13G1127 Fragaria x ananassa HOM05D000194 ORTHO05D000069 2.1e-17 93.2 190 38.9
FAN04G2986 Fragaria x ananassa HOM05D000194 ORTHO05D000069 2.7e-17 92.8 195 37.9
FAN08G1336 Fragaria x ananassa HOM05D000194 ORTHO05D000069 2.7e-17 92.8 195 38.5
Lj4g0004861 Lotus japonicus HOM05D000194 ORTHO05D000069 3.5e-17 92.4 174 40.2
Psat1g037200 Pisum sativum HOM05D000194 ORTHO05D000069 4.6e-17 92.0 184 40.8
Sed0009976 Sechium edule HOM05D000194 ORTHO05D000069 4.6e-17 92.0 165 46.7
Sc12g0007610 Simmondsia chinensis HOM05D000194 ORTHO05D000069 4.6e-17 92.0 175 40.0
CSS0028237 Camellia sinensis var. sinensis HOM05D000194 ORTHO05D000069 6.0e-17 91.7 178 39.9
Glyma.17G223100 Glycine max HOM05D000194 ORTHO05D000069 6.0e-17 91.7 173 41.6
arahy.Tifrunner.gnm1.ann1.AMIM7J Arachis hypogaea HOM05D000194 ORTHO05D000069 7.9e-17 91.3 174 40.8
Actinidia19843 Actinidia chinensis HOM05D000194 ORTHO05D000069 1.0e-16 90.9 168 43.5
Gohir.A07G066400 Gossypium hirsutum HOM05D000194 ORTHO05D000069 1.0e-16 90.9 184 41.8
Gohir.D07G070900 Gossypium hirsutum HOM05D000194 ORTHO05D000069 1.0e-16 90.9 184 41.8
Gorai.001G074900 Gossypium raimondii HOM05D000194 ORTHO05D000069 1.0e-16 90.9 184 41.8
arahy.Tifrunner.gnm1.ann1.5JBK01 Arachis hypogaea HOM05D000194 ORTHO05D000069 1.3e-16 90.5 174 40.2
Gohir.D09G049400 Gossypium hirsutum HOM05D000194 ORTHO05D000069 1.3e-16 90.5 178 40.4
Gorai.006G060400 Gossypium raimondii HOM05D000194 ORTHO05D000069 1.3e-16 90.5 178 40.4
Duzib084G0548 Durio zibethinus HOM05D000194 ORTHO05D000069 1.8e-16 90.1 180 40.0
FvH4_5g11950 Fragaria vesca HOM05D000194 ORTHO05D000069 1.8e-16 90.1 197 37.6
FAN18G2070 Fragaria x ananassa HOM05D000194 ORTHO05D000069 1.8e-16 90.1 197 37.6
Rhsim08G0132400 Rhododendron simsii HOM05D000194 ORTHO05D000069 1.8e-16 90.1 167 41.9
MD14G1227400 Malus domestica HOM05D000194 ORTHO05D000069 3.9e-16 89.0 141 44.7
Potri.015G046300 Populus trichocarpa HOM05D000194 ORTHO05D000069 3.9e-16 89.0 180 39.4
MELO3C017314.2 Cucumis melo HOM05D000194 ORTHO05D000069 5.1e-16 88.6 165 40.6
CsaV3_1G003910 Cucumis sativus L. HOM05D000194 ORTHO05D000069 5.1e-16 88.6 165 41.8
TAR374G1494 Trochodendron aralioides HOM05D000194 ORTHO05D000069 6.7e-16 88.2 187 41.2
Gohir.A09G048300 Gossypium hirsutum HOM05D000194 ORTHO05D000069 8.7e-16 87.8 183 39.9
FAN18G3177 Fragaria x ananassa HOM05D000194 ORTHO05D000069 1.1e-15 87.4 198 36.9
TAR371G0496 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.1e-15 87.4 188 39.9
Aqoxy3G00268 Aquilegia oxysepala HOM05D000194 ORTHO05D000069 1.5e-15 87.0 182 36.8
Cpa.g.sc3.503 Carica papaya HOM05D000194 ORTHO05D000069 1.5e-15 87.0 186 41.9
Sed0028157 Sechium edule HOM05D000194 ORTHO05D000069 2.5e-15 86.3 171 43.3
Hma1.2p1_0701F.1_g205900 Hydrangea macrophylla HOM05D000194 ORTHO05D000069 3.3e-15 85.9 191 40.3
CANSAT80G1608 Cannabis sativa HOM05D000194 ORTHO05D000069 4.3e-15 85.5 198 38.4
Atru.chr9.845 Acer truncatum HOM05D000194 ORTHO05D000069 9.6e-15 84.3 171 39.8
SGA_v2.0_scaffold29G12280 Striga asiatica HOM05D000194 ORTHO05D000069 9.6e-15 84.3 166 41.6
Nitab4.5_0001536g0060 Nicotiana tabacum HOM05D000194 ORTHO05D000069 1.3e-14 84.0 143 44.8
TWI60G0049 Tripterygium wilfordii HOM05D000194 ORTHO05D000069 1.6e-14 83.6 180 40.6
Gohir.D09G172600 Gossypium hirsutum HOM05D000194 ORTHO05D000069 2.1e-14 83.2 188 39.9
Lalb_Chr14g0371101 Lupinus albus HOM05D000194 ORTHO05D000069 4.8e-14 82.0 169 39.1
Nn3g17877 Nelumbo nucifera HOM05D000194 ORTHO05D000069 4.8e-14 82.0 184 37.0
HanXRQChr12g0367441 Helianthus annuus HOM05D000194 ORTHO05D000069 8.2e-14 81.3 175 38.9
Hund10258 Selenicereus undatus HOM05D000194 ORTHO05D000069 8.2e-14 81.3 187 36.4
Peaxi162Scf00015g01031 Petunia axillaris HOM05D000194 ORTHO05D000069 1.1e-13 80.9 175 37.7
Migut.D00641 Erythranthe guttata HOM05D000194 ORTHO05D000069 1.4e-13 80.5 173 37.6
Gorai.007G005700 Gossypium raimondii HOM05D000194 ORTHO05D000069 1.4e-13 80.5 166 39.8
Gorai.006G194500 Gossypium raimondii HOM05D000194 ORTHO05D000069 1.8e-13 80.1 188 39.4
Gohir.A09G177000 Gossypium hirsutum HOM05D000194 ORTHO05D000069 2.4e-13 79.7 188 38.3
HanXRQChr13g0387041 Helianthus annuus HOM05D000194 ORTHO05D000069 4.1e-13 79.0 164 37.8
DCAR_015144 Daucus carota HOM05D000194 ORTHO05D000069 6.9e-13 78.2 150 41.3
Nitab4.5_0000208g0350 Nicotiana tabacum HOM05D000194 ORTHO05D000069 6.9e-13 78.2 144 45.8
ClCG06G014740 Citrullus lanatus HOM05D000194 ORTHO05D000069 9.0e-13 77.8 162 41.4
Gohir.D11G004633 Gossypium hirsutum HOM05D000194 ORTHO05D000069 9.0e-13 77.8 113 46.9
Hma1.2p1_2409F.1_g321520 Hydrangea macrophylla HOM05D000194 ORTHO05D000069 1.2e-12 77.4 175 40.6
TAR622G1396 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.2e-12 77.4 160 40.0
PGSC0003DMG400005388 Solanum tuberosum HOM05D000194 ORTHO05D000069 2.6e-12 76.3 173 41.0
CSS0043209 Camellia sinensis var. sinensis HOM05D000194 ORTHO05D000069 4.5e-12 75.5 165 42.4
AUR62029874 Chenopodium quinoa HOM05D000194 ORTHO05D000069 4.5e-12 75.5 82 56.1
TAR629G1081 Trochodendron aralioides HOM05D000194 ORTHO05D000069 5.8e-12 75.1 183 39.3
Lalb_Chr05g0222461 Lupinus albus HOM05D000194 ORTHO05D000069 1.0e-11 74.3 182 37.4
Sabra04G0080600 Salix brachista HOM05D000194 ORTHO05D000069 1.0e-11 74.3 172 38.4
GSVIVG01031020001 Vitis vinifera HOM05D000194 ORTHO05D000069 1.0e-11 74.3 182 36.8
Solyc12g036470.2 Solanum lycopersicum HOM05D000194 ORTHO05D000069 1.3e-11 73.9 173 40.5
Hma1.2p1_0061F.1_g033700 Hydrangea macrophylla HOM05D000194 ORTHO05D000069 1.7e-11 73.6 170 40.6
CAN.G1425.9 Capsicum annuum HOM05D000194 ORTHO05D000069 2.9e-11 72.8 176 36.4
AUR62025839 Chenopodium quinoa HOM05D000194 ORTHO05D000069 5.0e-11 72.0 82 54.9
Potri.017G115300 Populus trichocarpa HOM05D000194 ORTHO05D000069 5.0e-11 72.0 170 37.1
PGSC0003DMG400005725 Solanum tuberosum HOM05D000194 ORTHO05D000069 1.1e-10 70.9 62 67.7
Nitab4.5_0005224g0060 Nicotiana tabacum HOM05D000194 ORTHO05D000069 1.4e-10 70.5 111 43.2
Potri.004G099400 Populus trichocarpa HOM05D000194 ORTHO05D000069 1.4e-10 70.5 173 34.1
Sabra15G0039300 Salix brachista HOM05D000194 ORTHO05D000069 1.4e-10 70.5 177 33.9
MBI16_g47432_MAGBIO Magnolia biondii HOM05D000194 ORTHO05D000069 1.9e-10 70.1 172 36.0
Eucgr.B00731 Eucalyptus grandis HOM05D000194 ORTHO05D000069 3.2e-10 69.3 178 36.5
Lsat_1_v5_gn_8_31220 Lactuca sativa HOM05D000194 ORTHO05D000069 3.2e-10 69.3 148 41.9
Nitab4.5_0002906g0120 Nicotiana tabacum HOM05D000194 ORTHO05D000069 4.2e-10 68.9 109 44.0
Actinidia14904 Actinidia chinensis HOM05D000194 ORTHO05D000069 5.5e-10 68.6 173 37.6
AT1G73830 Arabidopsis thaliana HOM05D000194 ORTHO05D000069 5.5e-10 68.6 154 43.5
Solyc04g007300.4 Solanum lycopersicum HOM05D000194 ORTHO05D000069 5.5e-10 68.6 188 32.4
Dinv31624 Davidia involucrata HOM05D000194 ORTHO05D000069 7.1e-10 68.2 186 36.6
Oeu025893.1 Olea europaea HOM05D000194 ORTHO05D000069 7.1e-10 68.2 74 54.1
EL10Ac5g11457 Beta vulgaris HOM05D000194 ORTHO05D000069 9.3e-10 67.8 77 53.2
Dinv21065 Davidia involucrata HOM05D000194 ORTHO05D000069 1.2e-09 67.4 175 37.1
Gohir.A11G005400 Gossypium hirsutum HOM05D000194 ORTHO05D000069 1.2e-09 67.4 175 36.6
AL2G33650 Arabidopsis lyrata HOM05D000194 ORTHO05D000069 1.6e-09 67.0 134 45.5
SalBow8G2710 Salvia bowleyana HOM05D000194 ORTHO05D000069 1.6e-09 67.0 115 35.7
Sopen12g016990 Solanum pennellii HOM05D000194 ORTHO05D000069 2.1e-09 66.6 101 50.5
Eucgr.K02229 Eucalyptus grandis HOM05D000194 ORTHO05D000069 3.5e-09 65.9 181 34.8
Oeu061297.3 Olea europaea HOM05D000194 ORTHO05D000069 3.5e-09 65.9 156 35.9
Hma1.2p1_0653F.1_g196220 Hydrangea macrophylla HOM05D000194 ORTHO05D000069 6.1e-09 65.1 142 39.4
PSO063G6353 Papaver somniferum HOM05D000194 ORTHO05D000069 6.1e-09 65.1 186 37.1
SGA_v2.0_scaffold3G01472 Striga asiatica HOM05D001447 ORTHO05D008204 7.9e-09 64.7 82 53.7
Nn4g23887 Nelumbo nucifera HOM05D000194 ORTHO05D000069 1.0e-08 64.3 185 33.5
MSTRG.12450 Avicennia marina HOM05D000194 ORTHO05D000069 1.3e-08 63.9 61 60.7
Haze_14154 Corylus avellana HOM05D000194 ORTHO05D000069 1.3e-08 63.9 176 34.1
ECA233G5433 Erigeron canadensis HOM05D000194 ORTHO05D000069 1.3e-08 63.9 88 53.4
MBI09_g16507_MAGBIO Magnolia biondii HOM05D000194 ORTHO05D000069 1.3e-08 63.9 181 34.8
FAN13G0432 Fragaria x ananassa HOM05D000194 ORTHO05D000069 1.8e-08 63.5 143 37.1
Sabra17G0095500 Salix brachista HOM05D000194 ORTHO05D000069 2.3e-08 63.2 173 35.3
ATR1125G105 Amborella trichopoda HOM05D000194 ORTHO05D000069 3.0e-08 62.8 176 34.7
CiPaw.03G061600 Carya illinoinensis HOM05D000194 ORTHO05D000069 3.0e-08 62.8 89 53.9
Oeu057723.1 Olea europaea HOM05D000194 ORTHO05D000069 3.0e-08 62.8 166 38.6
Peaxi162Scf00634g00326 Petunia axillaris HOM05D000194 ORTHO05D000069 3.0e-08 62.8 157 40.8
Sopen00g008050 Solanum pennellii HOM05D000194 ORTHO05D000069 3.9e-08 62.4 66 60.6
Manes.01G011042 Manihot esculenta HOM05D000194 ORTHO05D000069 5.1e-08 62.0 180 36.7
MSTRG.18449 Avicennia marina HOM05D000194 ORTHO05D000069 6.7e-08 61.6 158 39.2
Oeu034229.1 Olea europaea HOM05D000194 ORTHO05D000069 6.7e-08 61.6 192 37.5
PGR044G1668 Punica granatum HOM05D000194 ORTHO05D000069 6.7e-08 61.6 173 33.5
Thhalv10019010m.g Eutrema salsugineum HOM05D000194 ORTHO05D000069 8.7e-08 61.2 100 48.0
Solyc03g119390.4 Solanum lycopersicum HOM05D000194 ORTHO05D000069 8.7e-08 61.2 62 62.9
unitig_22.g6867 Utricularia gibba HOM05D000194 ORTHO05D000069 8.7e-08 61.2 112 39.3
Migut.N02357 Erythranthe guttata HOM05D000194 ORTHO05D000069 1.9e-07 60.1 78 55.1
PSO832G3003 Papaver somniferum HOM05D000194 ORTHO05D000069 1.9e-07 60.1 187 35.3
CARHR066920 Cardamine hirsuta HOM05D000194 ORTHO05D000069 2.5e-07 59.7 101 47.5
SalBow8G0298 Salvia bowleyana HOM05D000194 ORTHO05D000069 2.5e-07 59.7 179 34.1
CSS0038242 Camellia sinensis var. sinensis HOM05D000194 ORTHO05D000069 4.3e-07 58.9 173 32.9
DCAR_026740 Daucus carota HOM05D000194 ORTHO05D000069 5.7e-07 58.5 119 37.0
SGA_v2.0_scaffold8G04559 Striga asiatica HOM05D000194 ORTHO05D000069 5.7e-07 58.5 110 40.0
Cc00_g29370 Coffea canephora HOM05D000194 ORTHO05D000069 7.4e-07 58.2 41 75.6
EL10Ac6g14374 Beta vulgaris HOM05D000194 ORTHO05D000069 9.7e-07 57.8 44 63.6
Lsat_1_v5_gn_4_16500 Lactuca sativa HOM05D000194 ORTHO05D000069 9.7e-07 57.8 60 53.3
QL02p051342 Quercus lobata HOM05D000194 ORTHO05D000069 9.7e-07 57.8 174 36.2
Sopen04g002360 Solanum pennellii HOM05D000194 ORTHO05D000069 1.3e-06 57.4 83 44.6
Cc11_g09940 Coffea canephora HOM05D000194 ORTHO05D000069 1.6e-06 57.0 153 36.6
Dinv33948 Davidia involucrata HOM05D000194 ORTHO05D000069 1.6e-06 57.0 151 37.7
MSTRG.849 Avicennia marina HOM05D000194 ORTHO05D000069 2.2e-06 56.6 137 35.0
Duzib138G0411 Durio zibethinus HOM05D000194 ORTHO05D000069 2.2e-06 56.6 178 33.7
HanXRQChr16g0529471 Helianthus annuus HOM05D000194 ORTHO05D000069 2.2e-06 56.6 89 42.7
SHI15726 Sapria himalayana HOM05D000194 ORTHO05D000069 2.2e-06 56.6 139 35.3
Thecc.04G133600 Theobroma cacao HOM05D000194 ORTHO05D000069 2.2e-06 56.6 78 53.8
Atru.chr1.1691 Acer truncatum HOM05D000194 ORTHO05D000069 3.7e-06 55.8 120 35.8
BolC6t39833H Brassica oleracea HOM05D000194 ORTHO05D000069 3.7e-06 55.8 145 36.6
COL.COLO4_09334 Corchorus olitorius HOM05D000194 ORTHO05D000069 3.7e-06 55.8 185 35.7
GSVIVG01011873001 Vitis vinifera HOM05D000194 ORTHO05D000069 3.7e-06 55.8 56 53.6
BcaB07g31848 Brassica carinata HOM05D000194 ORTHO05D000069 4.8e-06 55.5 79 50.6
CARHR019000 Cardamine hirsuta HOM05D000194 ORTHO05D000069 4.8e-06 55.5 133 40.6
MD13G1040000 Malus domestica HOM05D000194 ORTHO05D000069 4.8e-06 55.5 60 51.7
Nitab4.5_0003867g0030 Nicotiana tabacum HOM05D000194 ORTHO05D000069 4.8e-06 55.5 108 35.2
A06p14450 Brassica napus HOM05D000194 ORTHO05D000069 6.3e-06 55.1 111 39.6
CAN.G150.5 Capsicum annuum HOM05D000194 ORTHO05D000069 6.3e-06 55.1 54 55.6
Cpa.g.sc282.7 Carica papaya HOM05D000194 ORTHO05D000069 6.3e-06 55.1 89 43.8
THA.LOC104812145 Tarenaya hassleriana HOM05D000194 ORTHO05D000069 6.3e-06 55.1 173 34.7
Cpa.g.sc65.44 Carica papaya HOM05D000194 ORTHO05D000069 8.2e-06 54.7 57 54.4
Manes.14G104100 Manihot esculenta HOM05D000194 ORTHO05D000069 8.2e-06 54.7 56 50.0


User provided reference genes

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