Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 1.8e-199 699.1 366 100.0
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 8.8e-183 643.7 366 92.6
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 2.9e-178 628.6 366 90.4
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 2.8e-152 542.3 341 85.0
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 6.6e-122 441.4 384 65.9
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 4.3e-121 438.7 391 64.2
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 5.6e-121 438.3 381 64.8
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 1.3e-120 437.2 397 64.0
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 4.8e-120 435.3 382 64.4
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 4.0e-119 432.2 390 64.6
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 3.8e-117 425.6 384 63.8
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 6.4e-117 424.9 301 75.1
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 1.1e-116 424.1 375 65.1
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 2.4e-116 422.9 383 62.9
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.4e-116 422.9 383 62.9
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 4.2e-116 422.2 387 63.8
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 7.1e-116 421.4 369 64.2
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 7.1e-116 421.4 369 66.1
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 1.2e-115 420.6 369 65.6
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 1.6e-115 420.2 388 62.6
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.1e-115 419.9 367 65.1
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 2.7e-115 419.5 369 64.0
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 3.5e-115 419.1 378 63.5
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 3.5e-115 419.1 391 63.7
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 4.6e-115 418.7 351 67.5
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 7.9e-115 417.9 328 70.4
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 7.9e-115 417.9 373 63.5
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 7.9e-115 417.9 361 67.0
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 7.9e-115 417.9 386 62.2
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.0e-114 417.5 376 63.6
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 1.8e-114 416.8 375 64.3
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 1.8e-114 416.8 394 62.7
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 2.3e-114 416.4 372 64.5
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 3.0e-114 416.0 370 65.9
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 3.9e-114 415.6 387 62.5
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 5.1e-114 415.2 375 64.0
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 5.1e-114 415.2 370 63.2
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 6.7e-114 414.8 372 64.0
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 6.7e-114 414.8 374 65.5
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 6.7e-114 414.8 379 63.9
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 8.7e-114 414.5 370 64.3
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 1.1e-113 414.1 315 71.4
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 1.1e-113 414.1 297 75.1
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 1.5e-113 413.7 327 70.0
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 1.5e-113 413.7 275 80.0
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 1.5e-113 413.7 373 64.9
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 1.9e-113 413.3 377 64.2
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 1.9e-113 413.3 379 63.3
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 7.4e-113 411.4 277 78.7
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 9.6e-113 411.0 275 78.5
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 1.3e-112 410.6 379 63.1
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 1.3e-112 410.6 379 63.1
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 1.3e-112 410.6 322 71.1
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 1.3e-112 410.6 379 63.1
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 1.6e-112 410.2 367 63.5
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 2.1e-112 409.8 271 79.3
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 2.1e-112 409.8 374 63.6
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 6.2e-112 408.3 278 76.6
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 1.1e-111 407.5 387 62.3
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 1.4e-111 407.1 271 78.6
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 1.8e-111 406.8 326 68.7
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 1.8e-111 406.8 280 77.9
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 2.4e-111 406.4 379 62.3
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 5.3e-111 405.2 383 60.1
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 5.3e-111 405.2 410 60.7
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 1.5e-110 403.7 273 77.3
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 2.0e-110 403.3 381 62.2
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 3.4e-110 402.5 337 67.1
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 7.6e-110 401.4 427 57.4
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 1.0e-109 401.0 271 76.4
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 1.7e-109 400.2 269 77.0
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 2.2e-109 399.8 357 65.8
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 2.9e-109 399.4 263 79.5
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 1.1e-108 397.5 402 59.7
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 5.1e-106 388.7 322 67.4
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 8.7e-106 387.9 333 65.5
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 8.7e-106 387.9 333 65.2
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 7.4e-105 384.8 309 68.0
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 9.6e-105 384.4 251 80.5
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 3.7e-104 382.5 393 58.0
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 3.4e-102 375.9 302 65.9
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 3.8e-101 372.5 277 70.4
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 1.1e-100 370.9 277 70.0
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 1.9e-100 370.2 337 63.2
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 2.1e-99 366.7 291 66.7
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 8.7e-98 361.3 331 62.8
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 1.9e-97 360.1 305 63.3
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 4.8e-96 355.5 442 50.7
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 6.3e-96 355.1 282 64.9
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 3.1e-95 352.8 447 49.7
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 1.2e-94 350.9 298 64.8
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 1.2e-94 350.9 279 70.3
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 5.9e-94 348.6 259 72.6
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 3.8e-93 345.9 391 54.7
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 5.5e-92 342.0 328 61.3
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 5.5e-92 342.0 266 65.4
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 7.9e-91 338.2 336 57.4
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 3.0e-90 336.3 430 51.6
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 1.1e-89 334.3 302 58.9
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 6.3e-88 328.6 364 55.8
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.2e-85 320.1 211 79.1
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.0e-82 311.2 243 71.2
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 2.3e-82 310.1 309 61.2
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 7.4e-81 305.1 335 57.9
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 1.0e-77 294.7 308 57.8
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 5.5e-76 288.9 277 56.3
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 8.8e-74 281.6 266 57.1
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 7.5e-73 278.5 427 46.6
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 9.7e-73 278.1 391 48.8
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 1.1e-68 264.6 320 49.7
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 1.5e-68 264.2 182 78.6
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 3.6e-67 259.6 309 48.9
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 7.7e-62 241.9 263 50.6
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 2.2e-61 240.4 191 65.4
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 8.5e-61 238.4 254 56.7
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 6.8e-58 228.8 161 73.9
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 2.6e-57 226.9 270 51.1
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 4.0e-50 203.0 136 76.5
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 3.4e-49 199.9 131 80.2
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 2.2e-48 197.2 119 84.9
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 4.9e-48 196.1 137 74.5
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 8.6e-37 158.7 254 37.0
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.6e-35 154.5 111 71.2
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 8.4e-24 115.5 190 35.3
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 4.1e-23 113.2 180 39.4
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 7.1e-23 112.5 82 74.4
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 1.6e-19 101.3 90 64.4
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 3.2e-15 87.0 63 73.0
Peaxi162Scf00146g01322 Petunia axillaris HOM05D005749 ORTHO05D007208 2.8e-11 73.9 38 94.7
Actinidia19728 Actinidia chinensis HOM05D005749 ORTHO05D007208 4.0e-10 70.1 148 37.2
MCO11G480 Micromonas commoda HOM05D005749 ORTHO05D007208 4.0e-10 70.1 278 24.8
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 2.9e-08 63.9 36 86.1
CBR_g41620 Chara braunii HOM05D005749 ORTHO05D007208 1.6e-06 58.2 51 54.9


User provided reference genes

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