Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 0.0e+00 2409.0 1218 100.0
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 0.0e+00 2101.2 1240 87.4
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 0.0e+00 1917.1 1220 83.1
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 0.0e+00 1728.8 1091 81.8
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 0.0e+00 1221.5 1267 55.3
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 0.0e+00 1170.2 1232 55.4
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 0.0e+00 1154.4 1283 51.9
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 0.0e+00 1122.1 1270 51.3
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 0.0e+00 1101.7 1273 50.8
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 0.0e+00 1088.9 1272 51.7
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 0.0e+00 1081.2 1278 50.7
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 2.8e-310 1068.9 1232 51.1
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 3.8e-307 1058.5 1243 50.6
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 2.1e-305 1052.7 1312 48.3
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 1.7e-294 1016.5 1284 48.7
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 3.6e-289 998.8 940 56.9
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 2.1e-281 973.0 1281 46.1
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 1.9e-274 949.9 822 58.8
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 4.0e-272 942.2 1227 46.8
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 9.5e-266 921.0 1334 43.2
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 2.8e-265 919.5 1174 47.0
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 1.2e-263 914.1 931 55.3
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 1.4e-261 907.1 1237 44.6
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 4.6e-260 902.1 1238 45.2
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 5.1e-259 898.7 1317 44.3
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 3.4e-255 885.9 1296 43.6
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 4.4e-255 885.6 1293 44.3
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 4.4e-255 885.6 1275 43.1
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 1.4e-253 880.6 1237 44.5
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 6.0e-252 875.2 876 54.3
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 3.6e-249 865.9 1226 42.8
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 1.5e-247 860.5 1242 44.6
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 9.9e-239 831.2 830 52.4
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 3.8e-238 829.3 1315 38.9
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 3.5e-236 822.8 1143 44.7
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 2.3e-235 820.1 1061 46.3
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 2.0e-231 807.0 1227 42.8
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 2.2e-230 803.5 1077 46.5
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 2.2e-230 803.5 1176 43.0
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 3.8e-230 802.7 1229 41.6
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 9.3e-229 798.1 1022 47.7
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 2.1e-228 797.0 925 49.4
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 1.3e-225 787.7 1077 46.2
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 6.2e-225 785.4 1231 41.1
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 2.6e-223 780.0 1234 41.6
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 1.3e-222 777.7 1225 40.9
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 1.2e-220 771.2 1216 41.4
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 5.3e-216 755.7 837 49.7
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 7.7e-215 751.9 722 56.4
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 1.7e-214 750.7 833 49.7
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 5.5e-213 745.7 828 49.9
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 1.1e-210 738.0 828 49.8
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 1.1e-208 731.5 1236 39.6
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 2.1e-204 717.2 1249 37.9
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 6.1e-204 715.7 1193 39.1
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 3.9e-203 713.0 1199 39.6
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 3.7e-201 706.4 1136 39.8
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 3.5e-199 699.9 1238 39.3
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 1.2e-188 664.8 1250 37.4
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 4.7e-188 662.9 877 46.2
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 1.1e-184 651.7 940 42.9
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 2.0e-170 604.4 1208 35.3
HanXRQChr04g0102021 Helianthus annuus HOM05D007125 ORTHO05D008766 4.6e-167 593.2 640 51.4
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 1.9e-157 561.2 1234 34.1
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 7.3e-157 559.3 838 44.5
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 6.2e-156 556.2 975 35.6
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 6.8e-155 552.7 1235 34.2
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 4.6e-151 540.0 831 39.2
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 1.3e-150 538.5 873 38.3
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 1.6e-143 515.0 1101 33.1
Medtr7g066770 Medicago truncatula HOM05D007125 ORTHO05D008766 4.0e-139 500.4 443 59.8
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 2.9e-137 494.2 754 38.7
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 4.6e-135 486.9 651 43.0
Sc01g0006770 Simmondsia chinensis HOM05D007125 ORTHO05D008766 4.6e-135 486.9 495 54.3
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 1.1e-125 455.7 490 50.6
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 8.1e-124 449.5 801 39.1
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 5.0e-89 334.0 632 37.2
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 4.5e-66 257.7 738 28.3
Atru.chr8.2197 Acer truncatum HOM05D007125 ORTHO05D008766 1.5e-64 252.7 186 68.3
SEGI_28201 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 1.9e-64 252.3 361 41.0
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 3.7e-60 238.0 646 31.3
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 3.2e-51 208.4 596 32.6
MCO08G172 Micromonas commoda HOM05D007125 ORTHO05D008766 1.0e-49 203.4 885 25.2
arahy.Tifrunner.gnm1.ann1.IUS8SN Arachis hypogaea HOM05D007125 ORTHO05D008766 1.8e-30 139.4 184 45.1
arahy.Tifrunner.gnm1.ann1.KE62B1 Arachis hypogaea HOM05D007125 ORTHO05D008766 5.2e-30 137.9 184 44.6
arahy.Tifrunner.gnm1.ann1.KIE2XR Arachis hypogaea HOM05D007125 ORTHO05D008766 5.2e-30 137.9 184 44.6
MSTRG.19029 Avicennia marina HOM05D007125 ORTHO05D008766 8.9e-30 137.1 101 64.4
unitig_27.g24821 Utricularia gibba HOM05D007125 ORTHO05D008766 2.2e-28 132.5 549 26.4
TPR.G40809 Trifolium pratense HOM05D007125 ORTHO05D008766 1.1e-27 130.2 388 29.9
Sc01g0006780 Simmondsia chinensis HOM05D007125 ORTHO05D008766 9.2e-27 127.1 114 56.1
Actinidia13779 Actinidia chinensis HOM05D007125 ORTHO05D008766 4.6e-26 124.8 88 70.5
CSS0006466 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 4.6e-26 124.8 90 72.2
VMungo1383G1324 Vigna mungo HOM05D007125 ORTHO05D008766 1.7e-25 122.9 88 69.3
Cfa025266 Carpinus fangiana HOM05D007125 ORTHO05D008766 2.5e-24 119.0 659 24.3
BolC1t05511H Brassica oleracea HOM05D007125 ORTHO05D008766 2.1e-23 115.9 147 48.3
Lalb_Chr03g0042981 Lupinus albus HOM05D007125 ORTHO05D008766 6.9e-22 110.9 89 64.0
Eucgr.B02785 Eucalyptus grandis HOM05D007125 ORTHO05D008766 6.4e-20 104.4 337 27.9
MBI05_g03454_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 1.1e-19 103.6 270 33.7
Cre12.g489750 Chlamydomonas reinhardtii HOM05D015011 ORTHO05D017325 1.2e-18 100.1 696 22.6
Hma1.2p1_0763F.1_g214650 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 4.3e-16 91.7 227 34.8
MBI11_g31733_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 2.1e-15 89.4 60 66.7
MCO11G281 Micromonas commoda HOM05D015011 ORTHO05D017325 4.8e-15 88.2 706 22.7
unitig_27.g24820 Utricularia gibba HOM05D007125 ORTHO05D008766 2.6e-13 82.4 88 48.9
Sed0021710 Sechium edule HOM05D007125 ORTHO05D008766 1.7e-12 79.7 69 60.9
PRCOL_00002272 Prasinoderma coloniale HOM05D037949 ORTHO05D034420 4.2e-11 75.1 768 20.2
PRCOL_00001248 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 2.7e-10 72.4 221 28.1
TPR.G1592 Trifolium pratense HOM05D007125 ORTHO05D008766 1.3e-09 70.1 122 38.5
PRCOL_00005200 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 4.3e-08 65.1 183 31.7
MCO16G645 Micromonas commoda HOM05D014975 ORTHO05D016505 6.2e-07 61.2 226 28.8
AagrBONN_evm.TU.Sc2ySwM_362.2826 Anthoceros agrestis HOM05D014975 ORTHO05D016505 1.1e-06 60.5 156 28.8
MCO06G281 Micromonas commoda HOM05D037949 ORTHO05D034420 1.1e-06 60.5 136 33.1
Ciclev10013272m.g Citrus clementina HOM05D007125 ORTHO05D008766 3.1e-06 58.9 59 54.2
AagrBONN_evm.TU.Sc2ySwM_228.2040 Anthoceros agrestis HOM05D015011 ORTHO05D017325 6.9e-06 57.8 190 25.3
THA.LOC104805829 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 6.9e-06 57.8 202 26.2
Cre14.g613400 Chlamydomonas reinhardtii HOM05D037949 ORTHO05D034420 9.0e-06 57.4 582 22.0


User provided reference genes

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