Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G005520 Citrullus lanatus HOM05D006814 ORTHO05D008613 2.2e-182 642.1 319 100.0
MELO3C008839.2 Cucumis melo HOM05D006814 ORTHO05D008613 1.8e-163 579.3 319 90.9
CsaV3_4G012030 Cucumis sativus L. HOM05D006814 ORTHO05D008613 5.7e-162 574.3 319 90.0
CiPaw.11G097800 Carya illinoinensis HOM05D006814 ORTHO05D008613 3.6e-148 528.5 314 82.2
CSS0047525 Camellia sinensis var. sinensis HOM05D006814 ORTHO05D008613 4.0e-147 525.0 314 81.5
Cfa012484 Carpinus fangiana HOM05D006814 ORTHO05D008613 4.0e-147 525.0 321 80.7
CiPaw.11G096600 Carya illinoinensis HOM05D006814 ORTHO05D008613 4.0e-147 525.0 314 81.2
Rhsim11G0018900 Rhododendron simsii HOM05D006814 ORTHO05D008613 8.9e-147 523.9 318 79.6
Thecc.03G307100 Theobroma cacao HOM05D006814 ORTHO05D008613 2.6e-146 522.3 314 80.6
Hma1.2p1_0586F.1_g183880 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 4.4e-146 521.5 314 81.2
MD11G1183600 Malus domestica HOM05D006814 ORTHO05D008613 2.9e-145 518.8 314 78.7
Manes.02G107600 Manihot esculenta HOM05D006814 ORTHO05D008613 2.9e-145 518.8 314 79.3
Peaxi162Scf00170g01111 Petunia axillaris HOM05D006814 ORTHO05D008613 2.9e-145 518.8 320 79.4
Cpa.g.sc87.105 Carica papaya HOM05D006814 ORTHO05D008613 3.7e-145 518.5 313 80.5
Nitab4.5_0000685g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 3.7e-145 518.5 320 79.4
Atru.chr6.1626 Acer truncatum HOM05D006814 ORTHO05D008613 4.9e-145 518.1 321 79.8
Ciclev10032236m.g Citrus clementina HOM05D006814 ORTHO05D008613 4.9e-145 518.1 314 79.6
Duzib205G0392 Durio zibethinus HOM05D006814 ORTHO05D008613 6.4e-145 517.7 312 79.5
Potri.001G139100 Populus trichocarpa HOM05D006814 ORTHO05D008613 8.3e-145 517.3 314 79.3
Gohir.A08G154800 Gossypium hirsutum HOM05D006814 ORTHO05D008613 1.4e-144 516.5 314 79.0
FAN04G0609 Fragaria x ananassa HOM05D006814 ORTHO05D008613 2.4e-144 515.8 317 77.6
FAN08G0276 Fragaria x ananassa HOM05D006814 ORTHO05D008613 2.4e-144 515.8 317 77.6
RcHm_v2.0_Chr7g0211071 Rosa chinensis HOM05D006814 ORTHO05D008613 3.2e-144 515.4 306 79.1
Sabra01G0108000 Salix brachista HOM05D006814 ORTHO05D008613 5.4e-144 514.6 314 78.7
FAN18G2202 Fragaria x ananassa HOM05D006814 ORTHO05D008613 7.0e-144 514.2 317 77.3
TAR629G1931 Trochodendron aralioides HOM05D006814 ORTHO05D008613 7.0e-144 514.2 317 78.5
GSVIVG01013112001 Vitis vinifera HOM05D006814 ORTHO05D008613 7.0e-144 514.2 308 80.5
Gohir.D08G175300 Gossypium hirsutum HOM05D006814 ORTHO05D008613 1.2e-143 513.5 314 78.7
FvH4_5g22650 Fragaria vesca HOM05D006814 ORTHO05D008613 1.6e-143 513.1 317 77.0
PGSC0003DMG400014801 Solanum tuberosum HOM05D006814 ORTHO05D008613 1.6e-143 513.1 320 78.8
Cc08_g03190 Coffea canephora HOM05D006814 ORTHO05D008613 3.5e-143 511.9 316 78.8
FAN18G0582 Fragaria x ananassa HOM05D006814 ORTHO05D008613 3.5e-143 511.9 317 77.0
Nn1g02991 Nelumbo nucifera HOM05D006814 ORTHO05D008613 3.5e-143 511.9 320 78.4
Solyc08g076610.4 Solanum lycopersicum HOM05D006814 ORTHO05D008613 3.5e-143 511.9 320 78.8
Gorai.004G183200 Gossypium raimondii HOM05D006814 ORTHO05D008613 6.0e-143 511.1 314 78.3
Actinidia03355 Actinidia chinensis HOM05D006814 ORTHO05D008613 1.3e-142 510.0 314 78.3
Sopen08g025160 Solanum pennellii HOM05D006814 ORTHO05D008613 2.3e-142 509.2 320 78.4
CANSAT21G0682 Cannabis sativa HOM05D006814 ORTHO05D008613 3.0e-142 508.8 310 78.7
Lsat_1_v5_gn_3_19041 Lactuca sativa HOM05D006814 ORTHO05D008613 8.6e-142 507.3 320 76.9
CAN.G298.54 Capsicum annuum HOM05D006814 ORTHO05D008613 1.1e-141 506.9 318 77.0
Aqoxy4G00304 Aquilegia oxysepala HOM05D006814 ORTHO05D008613 2.5e-141 505.8 320 76.6
DCAR_032083 Daucus carota HOM05D006814 ORTHO05D008613 5.6e-141 504.6 317 77.9
Sc07g0008590 Simmondsia chinensis HOM05D006814 ORTHO05D008613 6.2e-140 501.1 318 77.4
HanXRQChr17g0538231 Helianthus annuus HOM05D006814 ORTHO05D008613 1.1e-139 500.4 317 77.3
HanXRQChr17g0538211 Helianthus annuus HOM05D006814 ORTHO05D008613 5.2e-139 498.0 317 77.0
Hund14354 Selenicereus undatus HOM05D006814 ORTHO05D008613 5.2e-139 498.0 313 76.0
Lj8A305G45 Lonicera japonica HOM05D006814 ORTHO05D008613 6.8e-139 497.7 321 77.6
PGR031G2224 Punica granatum HOM05D006814 ORTHO05D008613 1.2e-138 496.9 314 76.8
MSTRG.24841 Avicennia marina HOM05D006814 ORTHO05D008613 3.4e-138 495.4 320 75.3
vmacro00308 Vaccinium macrocarpon HOM05D006814 ORTHO05D008613 4.4e-138 495.0 335 73.4
PSO063G6077 Papaver somniferum HOM05D006814 ORTHO05D008613 9.8e-138 493.8 317 73.8
QL12p004459 Quercus lobata HOM05D006814 ORTHO05D008613 8.3e-137 490.7 336 74.7
AUR62007326 Chenopodium quinoa HOM05D006814 ORTHO05D008613 1.1e-136 490.3 308 76.3
Carub.0007s2360 Capsella rubella HOM05D006814 ORTHO05D008613 1.9e-136 489.6 312 75.0
TWI60G0232 Tripterygium wilfordii HOM05D006814 ORTHO05D008613 2.4e-136 489.2 315 74.0
C07p49120 Brassica napus HOM05D006814 ORTHO05D008613 7.1e-136 487.6 322 73.3
AL7G36810 Arabidopsis lyrata HOM05D006814 ORTHO05D008613 9.2e-136 487.3 314 74.2
CARHR224480 Cardamine hirsuta HOM05D006814 ORTHO05D008613 4.6e-135 485.0 314 74.2
BcaNung04035 Brassica carinata HOM05D006814 ORTHO05D008613 1.0e-134 483.8 314 74.5
ECA246G4850 Erigeron canadensis HOM05D006814 ORTHO05D008613 1.0e-134 483.8 326 72.7
A03p50690 Brassica napus HOM05D006814 ORTHO05D008613 1.7e-134 483.0 314 74.5
Aa31LG6G500 Aethionema arabicum HOM05D006814 ORTHO05D008613 2.3e-134 482.6 312 73.7
Thhalv10025847m.g Eutrema salsugineum HOM05D006814 ORTHO05D008613 3.0e-134 482.3 312 74.0
BcaC06g33591 Brassica carinata HOM05D006814 ORTHO05D008613 5.1e-134 481.5 314 74.2
BolC7t45420H Brassica oleracea HOM05D006814 ORTHO05D008613 5.1e-134 481.5 314 74.2
BraA03t14161Z Brassica rapa HOM05D006814 ORTHO05D008613 5.1e-134 481.5 314 74.2
COL.COLO4_16971 Corchorus olitorius HOM05D006814 ORTHO05D008613 5.1e-134 481.5 292 80.1
Lj3g0020867 Lotus japonicus HOM05D006814 ORTHO05D008613 1.5e-133 479.9 307 74.6
Oeu005300.2 Olea europaea HOM05D006814 ORTHO05D008613 2.5e-133 479.2 368 65.8
arahy.Tifrunner.gnm1.ann1.DD0PLV Arachis hypogaea HOM05D006814 ORTHO05D008613 4.3e-133 478.4 321 71.0
Medtr8g447310 Medicago truncatula HOM05D006814 ORTHO05D008613 3.6e-132 475.3 310 73.5
AUR62018677 Chenopodium quinoa HOM05D006814 ORTHO05D008613 4.7e-132 474.9 313 73.2
Sp7g16350 Schrenkiella parvula HOM05D006814 ORTHO05D008613 8.1e-132 474.2 314 72.9
arahy.Tifrunner.gnm1.ann1.S7AV19 Arachis hypogaea HOM05D006814 ORTHO05D008613 1.1e-131 473.8 321 69.8
Ca_26271_v3 Cicer arietinum L. HOM05D006814 ORTHO05D008613 2.3e-131 472.6 310 72.3
Migut.A01081 Erythranthe guttata HOM05D006814 ORTHO05D008613 1.2e-130 470.3 315 71.7
CDE11G0551 Ceratophyllum demersum HOM05D006814 ORTHO05D008613 7.6e-130 467.6 314 68.8
TPR.G8183 Trifolium pratense HOM05D006814 ORTHO05D008613 1.3e-129 466.8 309 72.2
Glyma.20G095300 Glycine max HOM05D006814 ORTHO05D008613 1.7e-129 466.5 311 73.3
VMungo0251G2608 Vigna mungo HOM05D006814 ORTHO05D008613 2.2e-129 466.1 311 71.7
THA.LOC104798334 Tarenaya hassleriana HOM05D006814 ORTHO05D008613 3.7e-129 465.3 318 69.8
EL10Ac5g12048 Beta vulgaris HOM05D006814 ORTHO05D008613 1.1e-128 463.8 316 72.8
SGA_v2.0_scaffold36G14306 Striga asiatica HOM05D006814 ORTHO05D008613 3.2e-128 462.2 357 66.7
Psat4g131760 Pisum sativum HOM05D006814 ORTHO05D008613 1.6e-127 459.9 310 71.0
Prupe.4G270400 Prunus persica HOM05D006814 ORTHO05D008613 7.8e-127 457.6 275 79.6
Aa31LG9G8590 Aethionema arabicum HOM05D006814 ORTHO05D008613 5.1e-126 454.9 312 70.5
Lalb_Chr05g0228761 Lupinus albus HOM05D006814 ORTHO05D008613 2.8e-124 449.1 306 69.9
Zm00001eb269700 Zea mays HOM05D006814 ORTHO05D008613 4.2e-120 435.3 316 67.1
ATR0772G225 Amborella trichopoda HOM05D006814 ORTHO05D008613 6.0e-119 431.4 308 66.6
Haze_08181 Corylus avellana HOM05D006814 ORTHO05D008613 2.3e-118 429.5 316 70.6
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 3.9e-118 428.7 314 67.2
Os06g0132600 Oryza sativa ssp. japonica HOM05D006814 ORTHO05D008613 5.1e-118 428.3 283 71.4
Sed0016076 Sechium edule HOM05D006814 ORTHO05D008613 2.2e-113 412.9 238 86.6
SEGI_31198 Sequoiadendron giganteum HOM05D006814 ORTHO05D008613 1.9e-112 409.8 314 65.6
Pp3c10_20230 Physcomitrium patens HOM05D006814 ORTHO05D008613 1.3e-97 360.5 304 56.2
Dinv28983 Davidia involucrata HOM05D006814 ORTHO05D008613 2.3e-94 349.7 223 77.1
AagrBONN_evm.TU.Sc2ySwM_228.215 Anthoceros agrestis HOM05D006814 ORTHO05D008613 3.9e-94 349.0 300 56.0
Mapoly0097s0033 Marchantia polymorpha HOM05D006814 ORTHO05D008613 5.7e-93 345.1 307 58.0
SMO358G0599 Selaginella moellendorffii HOM05D006814 ORTHO05D008613 1.8e-91 340.1 305 55.7
Eucgr.D02215 Eucalyptus grandis HOM05D006814 ORTHO05D008613 4.1e-91 339.0 217 75.1
Phvul.003G283200 Phaseolus vulgaris HOM05D006814 ORTHO05D008613 2.4e-83 313.2 216 71.3
AT4G17760 Arabidopsis thaliana HOM05D006814 ORTHO05D008613 6.9e-83 311.6 186 78.5
Nitab4.5_0025014g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 3.0e-70 269.6 184 72.3
CBR_g3124 Chara braunii HOM05D006814 ORTHO05D008613 1.4e-67 260.8 255 50.2
SalBow6G3153 Salvia bowleyana HOM05D006814 ORTHO05D008613 6.1e-63 245.4 142 81.0
GSVIVG01003310001 Vitis vinifera HOM05D006814 ORTHO05D008613 7.0e-59 231.9 151 70.9
DCAR_021700 Daucus carota HOM05D006814 ORTHO05D013862 4.7e-55 219.2 148 73.0
Hma1.2p1_0572F.1_g181150 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 2.8e-52 209.9 140 75.7
CAN.G298.53 Capsicum annuum HOM05D006814 ORTHO05D008613 8.3e-44 181.8 112 78.6
CAN.G298.50 Capsicum annuum HOM05D006814 ORTHO05D008613 7.7e-42 175.3 103 81.6
CAN.G2435.1 Capsicum annuum HOM05D006814 ORTHO05D008613 1.0e-30 138.3 86 80.2
Actinidia25984 Actinidia chinensis HOM05D006814 ORTHO05D008613 2.0e-29 134.0 76 85.5
Hma1.2p1_0586F.1_g183890 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 6.4e-28 129.0 135 54.1
Glyma.10G145666 Glycine max HOM05D006814 ORTHO05D008613 4.6e-26 122.9 73 76.7
Actinidia25985 Actinidia chinensis HOM05D006814 ORTHO05D008613 1.6e-23 114.4 89 67.4
Cre03.g162250 Chlamydomonas reinhardtii HOM05D006814 ORTHO05D008613 8.1e-23 112.1 354 25.1
PRCOL_00006064 Prasinoderma coloniale HOM05D006814 ORTHO05D008613 5.2e-22 109.4 341 26.7
MCO03G144 Micromonas commoda HOM05D006814 ORTHO05D008613 6.4e-20 102.4 298 27.2
EL10As1g23070 Beta vulgaris HOM05D006814 ORTHO05D088401 1.4e-11 74.7 41 85.4


User provided reference genes

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