Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 2042.3 965 100.0
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1902.5 977 91.8
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1870.1 978 90.7
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1803.1 975 87.0
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1595.1 968 77.2
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1592.4 976 76.1
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1586.6 975 75.7
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1583.5 975 76.0
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1574.7 975 75.8
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1567.4 968 75.5
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1566.2 961 76.7
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1565.4 967 74.8
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1563.9 971 74.9
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1563.1 968 75.2
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1563.1 970 74.8
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1562.0 968 75.6
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1559.7 968 75.2
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1555.0 968 75.0
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1550.0 976 75.0
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1546.9 968 74.6
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1544.6 989 73.7
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1543.5 980 73.1
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1541.2 972 74.6
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1540.4 979 74.0
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1535.4 977 74.7
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1530.8 975 73.1
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1529.2 976 72.5
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1527.7 977 73.2
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1527.7 971 73.4
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1519.2 973 72.6
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1519.2 974 73.0
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1516.5 973 72.9
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1511.9 972 72.7
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1511.9 969 72.8
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1510.4 963 73.5
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1510.0 965 73.3
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1509.6 969 73.6
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1508.4 965 73.2
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1508.4 970 73.4
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1508.4 975 72.0
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1508.0 973 72.8
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1506.5 964 72.5
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1506.1 972 72.4
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1503.8 975 72.2
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1503.4 983 71.8
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1501.5 985 71.8
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1501.5 969 72.4
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1500.7 968 73.3
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1500.3 963 72.9
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1499.2 974 72.5
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1498.0 968 72.4
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1496.5 975 71.5
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1494.9 975 72.2
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1494.9 976 71.8
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1493.8 969 71.9
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1491.9 976 72.0
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1490.7 976 71.8
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1490.3 977 71.8
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1489.2 964 72.0
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1487.6 978 71.3
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1487.6 961 72.4
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1485.7 970 71.2
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1484.9 991 69.6
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1484.2 967 71.9
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1480.3 989 71.2
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1474.1 965 71.6
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1473.0 986 69.6
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1472.6 976 69.4
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1472.6 964 71.5
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1471.8 974 70.4
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1471.4 985 70.3
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1470.3 972 71.2
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1470.3 963 71.7
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1469.5 975 70.6
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1468.0 975 71.0
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1468.0 973 71.5
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1461.8 973 70.0
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1456.0 970 69.9
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1455.7 985 69.7
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1453.7 975 68.9
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1453.0 971 71.7
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1451.4 972 68.9
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1451.0 976 69.9
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1449.5 978 69.5
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1448.0 925 73.1
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1447.6 972 70.7
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1445.6 940 71.4
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1440.6 980 70.0
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1436.4 973 68.8
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1432.9 969 69.5
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1430.2 967 70.3
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1425.6 968 69.3
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1418.3 982 68.1
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1415.2 977 68.8
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1411.0 984 68.1
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1406.3 980 68.3
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1406.3 980 68.3
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1405.6 979 67.8
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1404.8 999 68.7
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1404.0 979 67.8
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1402.9 874 74.6
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1400.2 981 67.4
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1397.5 979 67.9
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1394.8 979 67.3
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1389.8 979 67.2
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1387.9 976 67.5
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1387.5 872 73.5
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1386.7 980 67.2
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1386.3 980 67.2
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1385.2 976 67.4
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1369.4 980 66.8
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1368.6 965 66.5
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1367.4 979 67.2
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1361.7 983 65.2
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1346.3 845 73.6
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1345.1 840 74.4
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1323.9 1004 62.5
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1316.6 770 77.4
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1310.4 976 64.7
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1296.2 980 65.0
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1284.6 978 62.6
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1274.2 980 63.8
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1209.9 851 66.5
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1193.3 759 73.6
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1181.0 788 70.6
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1159.4 789 69.5
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1157.5 802 68.1
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 2.6e-306 1055.4 980 53.2
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.9e-293 1012.7 966 52.5
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 7.2e-293 1010.7 682 69.4
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 6.8e-275 951.0 698 65.9
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 4.4e-274 948.3 977 50.5
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 7.8e-263 911.0 972 48.4
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 8.6e-262 907.5 972 48.0
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.1e-232 810.8 569 67.7
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 9.3e-232 807.7 870 49.0
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.5e-208 729.9 403 80.6
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 6.2e-135 486.1 284 79.6
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 1.7e-116 424.9 343 60.1
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 1.4e-107 395.2 401 52.9
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 6.9e-102 376.3 217 80.6
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 3.8e-92 344.0 377 50.4
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 4.2e-91 340.5 193 80.3
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.5e-88 332.0 202 72.8
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 9.1e-86 322.8 275 58.5
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 5.5e-75 287.0 159 80.5
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 4.5e-69 267.3 215 59.5
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 7.2e-67 260.0 143 80.4
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.6e-66 258.8 156 73.1
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 6.8e-65 253.4 649 30.7
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 9.8e-48 196.4 362 38.1
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 1.8e-41 175.6 96 78.1
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 6.8e-41 173.7 786 23.3
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 2.8e-34 151.8 149 51.0
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.1e-33 149.8 94 79.8
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 4.0e-33 147.9 93 69.9
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 8.9e-33 146.7 149 51.7
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 9.9e-32 143.3 164 48.8
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 1.1e-30 139.8 142 52.1
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.6e-29 136.0 90 68.9
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 2.4e-25 122.1 118 51.7
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 2.9e-23 115.2 184 36.4
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 3.8e-23 114.8 183 38.3
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.5e-16 92.8 308 27.9
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 3.4e-16 91.7 114 44.7
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 4.5e-16 91.3 119 45.4
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 1.6e-13 82.8 111 44.1
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 2.3e-12 79.0 71 50.7
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.5e-11 75.5 46 69.6
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 8.1e-10 70.5 49 73.5
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 2.4e-09 68.9 76 47.4
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 1.3e-07 63.2 36 72.2
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.3e-07 63.2 45 68.9


User provided reference genes

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