Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 0.0e+00 1318.1 650 100.0
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 0.0e+00 1250.0 650 94.6
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 0.0e+00 1240.7 650 94.2
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 0.0e+00 1196.0 650 90.6
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 0.0e+00 1100.9 587 91.5
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 1.5e-302 1042.3 657 79.9
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 3.7e-301 1037.7 653 79.5
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 6.4e-301 1036.9 653 79.3
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 7.0e-300 1033.5 610 83.0
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 1.9e-297 1025.4 611 81.5
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 3.3e-297 1024.6 666 78.4
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 4.3e-297 1024.2 616 80.4
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 7.3e-297 1023.5 585 84.4
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 9.5e-297 1023.1 586 84.5
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.6e-296 1022.3 590 83.7
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 3.6e-296 1021.1 670 76.1
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 3.6e-296 1021.1 590 83.9
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 4.7e-296 1020.8 659 76.9
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 6.2e-296 1020.4 590 83.7
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 6.2e-296 1020.4 611 81.3
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 6.2e-296 1020.4 669 77.6
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 8.0e-296 1020.0 625 80.3
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.1e-295 1019.6 660 77.3
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 1.1e-295 1019.6 655 78.0
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 1.8e-295 1018.8 623 80.4
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 3.1e-295 1018.1 625 80.2
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 3.1e-295 1018.1 612 80.4
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 4.0e-295 1017.7 661 76.7
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 6.8e-295 1016.9 604 81.8
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 6.8e-295 1016.9 615 80.3
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 8.9e-295 1016.5 719 73.4
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 4.9e-293 1010.7 582 84.0
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 4.1e-292 1007.7 591 82.6
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 2.0e-291 1005.4 543 88.2
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 4.6e-291 1004.2 618 78.8
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 7.8e-291 1003.4 584 82.7
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 7.8e-291 1003.4 628 78.5
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.3e-290 1002.7 609 80.0
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.3e-290 1001.9 628 78.7
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 3.3e-289 998.0 659 76.5
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 5.6e-289 997.3 593 81.3
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 7.3e-289 996.9 587 81.8
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 9.5e-289 996.5 610 79.5
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 3.6e-288 994.6 596 80.5
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 4.7e-288 994.2 578 82.5
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 8.1e-288 993.4 599 80.0
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 1.4e-287 992.6 615 79.5
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 1.4e-287 992.6 602 80.1
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 2.3e-287 991.9 593 80.8
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 4.0e-287 991.1 584 81.7
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 8.9e-287 989.9 584 81.3
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 1.5e-286 989.2 616 79.2
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 4.4e-286 987.6 590 81.2
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 5.8e-286 987.3 578 82.5
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 7.5e-286 986.9 580 81.6
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 1.7e-285 985.7 639 77.3
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 2.2e-285 985.3 613 78.8
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 4.9e-285 984.2 604 77.6
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 6.4e-285 983.8 591 81.0
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 6.4e-285 983.8 587 79.7
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 8.3e-285 983.4 582 81.6
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 8.3e-285 983.4 582 81.3
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 1.1e-284 983.0 587 79.0
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.4e-284 981.9 651 76.2
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 4.1e-284 981.1 602 77.7
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 5.4e-284 980.7 621 77.9
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 1.2e-283 979.5 596 79.2
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 1.2e-283 979.5 588 81.1
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 2.7e-283 978.4 602 76.7
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 6.0e-283 977.2 585 79.3
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 6.0e-283 977.2 587 78.7
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.0e-282 976.5 582 80.9
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 1.3e-282 976.1 636 76.4
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 3.0e-282 974.9 585 79.5
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.5e-281 972.6 571 81.6
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 1.9e-281 972.2 588 80.6
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 9.5e-281 969.9 608 76.6
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 9.5e-281 969.9 577 81.8
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 9.5e-281 969.9 593 79.8
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 1.2e-280 969.5 585 79.1
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 1.6e-280 969.1 588 78.9
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 2.8e-280 968.4 585 79.0
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 8.1e-280 966.8 587 78.4
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 4.0e-279 964.5 546 83.2
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 4.0e-279 964.5 573 80.5
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 6.8e-279 963.8 586 78.7
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.2e-278 963.0 597 78.4
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 1.5e-278 962.6 584 79.8
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 2.6e-278 961.8 553 82.6
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 7.6e-278 960.3 586 78.7
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 9.9e-278 959.9 597 78.1
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 1.3e-277 959.5 613 75.5
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 3.8e-277 958.0 613 75.4
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 2.4e-276 955.3 528 85.8
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 4.6e-275 951.0 531 85.3
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 6.0e-275 950.7 607 75.6
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 7.8e-275 950.3 581 78.1
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 1.1e-273 946.4 546 81.3
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.9e-273 945.7 582 78.7
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 1.9e-273 945.7 552 82.6
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 2.4e-271 938.7 683 69.3
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 1.1e-268 929.9 552 79.2
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 7.1e-268 927.2 592 76.0
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 1.6e-267 926.0 580 77.4
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 6.0e-267 924.1 580 77.2
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 1.1e-265 919.8 587 75.8
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 4.9e-261 904.4 570 77.4
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 2.1e-259 899.0 579 75.1
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 3.0e-258 895.2 532 79.5
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 1.1e-255 886.7 586 73.5
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 9.3e-252 873.6 588 75.0
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.5e-249 866.3 578 74.2
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.9e-249 865.9 610 68.7
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 4.9e-245 851.3 553 75.9
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 2.5e-241 839.0 527 77.2
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 5.5e-236 821.2 448 86.6
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 1.6e-235 819.7 448 87.1
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 5.7e-233 811.2 559 71.9
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 6.3e-232 807.7 584 66.1
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 6.9e-231 804.3 593 66.4
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 9.1e-231 803.9 615 63.6
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.5e-230 803.1 439 87.2
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 2.1e-211 739.6 518 69.7
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.1e-199 700.7 495 71.1
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.5e-193 680.2 450 72.0
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 1.2e-185 654.1 538 59.7
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 1.7e-176 623.6 361 81.2
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 2.8e-171 606.3 344 84.0
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 8.1e-163 578.2 586 54.8
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 3.6e-147 526.2 363 73.3
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 1.1e-146 524.6 278 89.2
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 2.4e-146 523.5 574 48.3
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 1.1e-143 514.6 280 86.8
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 6.0e-142 508.8 417 63.1
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 7.9e-142 508.4 554 52.5
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 2.4e-130 470.3 318 74.2
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 2.3e-117 427.2 574 43.9
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 5.9e-113 412.5 288 69.8
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 2.9e-96 357.1 645 36.4
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 1.7e-88 331.3 184 84.8
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 8.5e-88 328.9 263 66.5
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 7.2e-87 325.9 179 86.6
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 2.6e-84 317.4 188 78.7
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.8e-83 313.9 179 82.7
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 2.4e-82 310.8 597 36.0
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 1.5e-79 301.6 535 36.4
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 1.9e-79 301.2 167 85.0
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 3.7e-75 287.0 585 33.7
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.5e-68 265.0 321 48.3
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 1.7e-64 251.5 609 32.0
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.9e-63 248.1 140 84.3
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 1.6e-62 245.0 198 64.6
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 7.5e-60 236.1 595 30.1
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 1.9e-50 204.9 122 82.8
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.5e-47 194.5 117 79.5
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 3.4e-44 184.1 107 83.2
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 5.8e-44 183.3 98 87.8
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 1.7e-40 171.8 155 59.4
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 8.1e-38 162.9 131 61.8
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 3.3e-31 141.0 77 81.8
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.8e-30 137.9 118 60.2
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 4.8e-30 137.1 137 53.3
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 1.1e-29 136.0 67 91.0
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 1.5e-28 132.1 102 63.7
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 3.4e-28 131.0 64 93.8
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 2.1e-22 111.7 64 82.8
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 4.8e-14 84.0 73 63.0
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 1.0e-11 76.3 120 41.7
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.9e-11 74.7 54 66.7
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 1.2e-09 69.3 72 48.6
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 2.3e-08 65.1 69 52.2
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 2.5e-07 61.6 38 68.4


User provided reference genes

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