Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 1.6e-257 892.1 418 100.0
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 2.5e-234 815.1 418 90.2
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 1.8e-232 808.9 418 90.2
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 1.3e-201 706.4 420 80.2
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 2.4e-192 675.6 422 75.1
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 7.2e-181 637.5 425 69.4
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 3.2e-173 612.1 367 75.7
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 6.1e-172 607.8 423 68.1
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 8.0e-172 607.4 378 73.8
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 6.8e-171 604.4 368 73.1
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 3.4e-170 602.1 412 67.5
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 7.5e-170 600.9 381 70.9
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 1.3e-169 600.1 367 73.8
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 1.7e-169 599.7 371 72.8
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 3.7e-169 598.6 402 68.7
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 3.7e-169 598.6 408 68.1
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 4.9e-169 598.2 401 68.1
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 6.3e-169 597.8 375 71.7
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 7.0e-168 594.3 373 72.1
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 1.2e-167 593.6 374 71.9
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 1.6e-167 593.2 406 68.2
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 1.6e-167 593.2 361 74.0
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 3.5e-167 592.0 476 60.7
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 4.5e-167 591.7 375 71.5
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 4.5e-167 591.7 403 67.7
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 1.3e-166 590.1 391 68.5
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 2.3e-166 589.3 385 69.9
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 3.8e-166 588.6 388 68.8
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 8.6e-166 587.4 364 72.3
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.5e-165 586.6 388 68.8
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 2.5e-165 585.9 388 68.6
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 2.5e-165 585.9 384 69.3
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 4.3e-165 585.1 388 68.3
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 5.6e-165 584.7 384 68.8
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 2.1e-164 582.8 376 69.7
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 6.1e-164 581.3 396 67.2
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 8.0e-164 580.9 368 72.3
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 1.0e-163 580.5 368 71.5
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 3.0e-163 578.9 366 71.0
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 6.8e-163 577.8 366 71.3
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 1.2e-162 577.0 417 63.3
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 1.2e-162 577.0 402 65.9
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 1.5e-162 576.6 383 68.1
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 4.4e-162 575.1 388 67.3
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 4.4e-162 575.1 402 66.2
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 5.7e-162 574.7 401 65.1
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 5.7e-162 574.7 392 65.6
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 9.8e-162 573.9 370 70.3
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 1.3e-161 573.5 415 63.9
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 1.8e-160 569.7 364 70.6
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 5.9e-159 564.7 400 65.5
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 7.8e-159 564.3 349 73.1
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 1.0e-158 563.9 369 69.1
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 1.3e-158 563.5 370 67.3
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 3.0e-158 562.4 407 64.6
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 3.0e-158 562.4 439 62.9
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 6.6e-158 561.2 413 61.7
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 1.5e-157 560.1 364 69.5
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 2.5e-157 559.3 371 68.7
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 1.2e-156 557.0 370 67.6
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 1.2e-156 557.0 389 66.3
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 8.0e-156 554.3 433 60.3
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 8.9e-155 550.8 402 65.7
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 3.4e-154 548.9 393 66.2
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 7.5e-154 547.7 370 67.3
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 2.2e-153 546.2 423 63.6
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 3.7e-153 545.4 388 64.9
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 1.1e-152 543.9 367 67.0
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 1.9e-152 543.1 367 68.9
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 1.9e-152 543.1 396 64.6
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 2.4e-152 542.7 400 64.0
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 4.1e-152 542.0 367 68.4
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 5.4e-152 541.6 387 67.2
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 1.6e-151 540.0 427 61.6
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 1.0e-150 537.3 425 60.7
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 2.3e-150 536.2 393 64.4
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 2.3e-150 536.2 393 64.4
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 6.6e-150 534.6 400 64.0
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 4.3e-149 531.9 347 71.2
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 2.8e-148 529.3 370 65.7
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 6.2e-148 528.1 392 64.8
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 1.1e-147 527.3 392 64.8
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 1.4e-147 526.9 366 65.6
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 8.9e-147 524.2 383 64.2
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 8.3e-145 517.7 410 60.2
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 2.7e-143 512.7 364 65.7
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 3.9e-142 508.8 339 70.2
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 5.6e-141 505.0 406 56.9
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 5.2e-139 498.4 342 66.7
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 2.1e-135 486.5 389 59.6
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 2.1e-132 476.5 293 72.7
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 1.4e-131 473.8 369 59.1
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 6.9e-131 471.5 322 66.8
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 5.8e-130 468.4 317 67.8
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 9.9e-130 467.6 363 60.1
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.1e-128 464.2 306 68.3
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 7.8e-127 458.0 393 55.2
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 7.6e-122 441.4 402 50.2
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 9.9e-122 441.0 402 50.0
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 9.3e-120 434.5 379 54.4
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 5.1e-118 428.7 279 68.5
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 4.0e-107 392.5 364 49.5
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 2.3e-102 376.7 281 65.1
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 5.7e-101 372.1 260 66.9
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 6.7e-94 348.6 226 71.2
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 1.3e-92 344.4 364 48.1
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 4.4e-77 292.7 365 44.1
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 8.2e-76 288.5 343 46.6
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 9.1e-67 258.5 186 62.9
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 1.2e-66 258.1 241 56.4
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 1.4e-54 218.0 465 30.5
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 2.2e-52 210.7 194 53.1
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 3.6e-47 193.4 235 40.4
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 3.7e-44 183.3 130 62.3
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 1.3e-36 158.3 102 65.7
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 8.1e-23 112.5 86 57.0
RcHm_v2.0_Chr4g0398881 Rosa chinensis HOM05D006474 ORTHO05D007994 5.8e-21 106.3 204 30.9
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 4.9e-20 103.2 90 55.6
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 3.3e-16 90.5 60 71.7
Oeu005633.1 Olea europaea HOM05D006474 ORTHO05D007994 6.2e-15 86.3 65 60.0
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 1.4e-14 85.1 61 67.2
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 3.1e-14 84.0 61 63.9
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 7.1e-11 72.8 42 78.6
SEGI_25707 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 2.3e-09 67.8 42 66.7
Lsat_1_v5_gn_3_77541 Lactuca sativa HOM05D006474 ORTHO05D007994 1.5e-08 65.1 51 54.9
Gohir.A06G077600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 1.8e-06 58.2 71 46.5


User provided reference genes

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