Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 1.4e-309 1065.4 562 100.0
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 1.2e-255 886.3 562 85.8
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 4.3e-237 824.7 566 80.4
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 2.2e-201 706.1 474 84.2
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 1.5e-141 507.3 620 52.1
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 1.6e-138 497.3 560 56.4
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.0e-137 494.6 561 55.3
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 6.4e-132 475.3 612 52.1
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 3.0e-129 466.5 550 51.3
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 2.8e-127 459.9 576 51.2
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 5.8e-125 452.2 576 51.2
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 9.9e-125 451.4 572 51.2
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 2.2e-124 450.3 563 52.9
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 1.9e-123 447.2 563 52.6
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 3.5e-122 443.0 563 51.0
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 1.1e-120 438.0 580 48.8
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 1.9e-120 437.2 595 51.1
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 1.6e-119 434.1 567 50.1
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.2e-117 427.9 587 49.6
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 1.5e-117 427.6 619 46.7
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 3.4e-117 426.4 561 50.8
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 4.4e-117 426.0 586 49.1
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 2.2e-116 423.7 566 48.8
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 8.4e-116 421.8 563 49.0
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 1.1e-115 421.4 513 52.6
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 1.4e-115 421.0 579 49.1
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 2.1e-114 417.2 561 48.5
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 7.8e-114 415.2 603 47.8
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 3.9e-113 412.9 565 48.8
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 6.6e-113 412.1 515 48.9
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 8.7e-113 411.8 565 49.7
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 2.1e-111 407.1 563 48.7
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 4.8e-111 406.0 595 46.4
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 4.8e-111 406.0 561 48.8
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 1.4e-110 404.4 635 44.6
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 4.0e-110 402.9 610 47.0
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 5.8e-109 399.1 590 48.1
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 1.3e-108 397.9 611 44.8
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 2.2e-108 397.1 574 47.6
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 1.9e-107 394.0 567 46.7
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 4.2e-107 392.9 564 45.4
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 7.1e-107 392.1 596 46.0
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 9.3e-107 391.7 573 45.9
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 2.1e-106 390.6 656 43.8
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 2.7e-106 390.2 560 46.4
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 3.0e-105 386.7 566 47.0
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 3.9e-105 386.3 592 46.1
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 3.3e-104 383.3 528 46.2
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 3.6e-103 379.8 580 45.2
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 6.2e-103 379.0 560 45.5
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 1.5e-101 374.4 565 45.1
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 3.4e-101 373.2 601 43.4
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 3.4e-101 373.2 556 45.1
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 2.2e-100 370.5 564 46.1
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 2.9e-100 370.2 604 44.4
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 1.4e-99 367.9 572 44.4
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 5.5e-99 365.9 497 47.3
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 7.1e-99 365.5 570 44.0
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 9.3e-99 365.2 570 44.0
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 9.3e-99 365.2 564 45.7
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 2.1e-98 364.0 570 44.4
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 2.1e-98 364.0 564 45.2
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 2.1e-98 364.0 564 45.7
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 6.0e-98 362.5 575 44.5
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 5.1e-97 359.4 569 44.1
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 2.5e-96 357.1 573 43.8
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 4.3e-96 356.3 569 43.1
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 7.4e-96 355.5 574 44.1
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 2.4e-94 350.5 587 43.3
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 2.0e-93 347.4 564 44.5
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 5.8e-93 345.9 570 44.4
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 1.3e-92 344.7 565 43.2
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 1.7e-92 344.4 610 40.7
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 2.9e-92 343.6 565 41.9
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 4.2e-91 339.7 567 42.5
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 1.2e-90 338.2 570 44.4
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.6e-90 337.8 565 43.4
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 3.5e-90 336.7 574 43.2
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 6.0e-90 335.9 526 44.3
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 1.3e-89 334.7 565 40.9
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.8e-89 334.3 567 42.2
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 1.9e-88 330.9 532 43.0
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 4.3e-88 329.7 565 42.1
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 4.3e-88 329.7 565 42.1
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 1.8e-86 324.3 581 43.2
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 3.1e-86 323.6 221 73.3
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 2.6e-85 320.5 599 40.2
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 3.4e-85 320.1 565 40.9
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.4e-83 314.7 375 51.5
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 1.2e-82 311.6 494 42.7
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 1.9e-80 304.3 503 41.9
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 1.9e-80 304.3 524 44.1
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 1.8e-78 297.7 243 65.4
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 4.5e-77 293.1 531 40.7
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 9.4e-75 285.4 376 51.1
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 2.6e-72 277.3 632 37.7
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 3.7e-71 273.5 575 38.8
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 1.4e-67 261.5 224 59.8
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 2.5e-67 260.8 282 55.0
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.8e-65 254.6 188 68.6
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 8.8e-65 252.3 148 77.7
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 2.6e-64 250.8 149 78.5
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 3.1e-62 243.8 148 77.7
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 2.6e-61 240.7 189 66.1
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 4.5e-61 240.0 179 69.3
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 4.5e-61 240.0 167 71.3
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 2.2e-60 237.7 156 71.8
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 6.5e-60 236.1 261 51.7
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 1.6e-58 231.5 158 72.2
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 3.3e-56 223.8 605 31.9
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 3.7e-55 220.3 149 70.5
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 1.1e-54 218.8 213 55.4
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 4.1e-54 216.9 599 31.4
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 1.2e-53 215.3 215 54.0
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 7.7e-53 212.6 570 32.8
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 6.5e-52 209.5 155 68.4
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 1.6e-50 204.9 503 39.2
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 4.7e-50 203.4 113 80.5
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 1.8e-49 201.4 448 38.2
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 1.8e-49 201.4 113 78.8
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 6.8e-49 199.5 215 52.1
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 4.4e-48 196.8 222 51.4
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 2.2e-39 167.9 392 39.3
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 2.2e-39 167.9 392 39.3
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 9.2e-38 162.5 145 67.6
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 7.7e-37 159.5 192 48.4
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.3e-35 154.1 86 79.1
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.3e-35 154.1 86 79.1
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 2.3e-33 147.9 499 30.3
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 1.2e-32 145.6 385 36.1
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 2.0e-32 144.8 164 57.3
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 2.9e-31 141.0 216 39.4
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 2.7e-29 134.4 146 61.6
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 2.3e-28 131.3 312 41.0
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 3.3e-27 127.5 98 65.3
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 2.3e-25 121.3 137 59.9
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 4.4e-24 117.1 199 39.7
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 7.0e-22 109.8 183 42.1
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 3.0e-20 104.4 144 50.0
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 6.6e-20 103.2 57 78.9
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 2.8e-18 97.8 223 38.1
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 5.2e-17 93.6 66 62.1
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 8.3e-15 86.3 136 39.7
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 5.4e-14 83.6 75 62.7
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 1.3e-12 79.0 163 39.9
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 1.3e-12 79.0 293 29.7
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 3.9e-12 77.4 139 34.5
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 4.7e-10 70.5 64 59.4
arahy.Tifrunner.gnm1.ann1.FR68MS Arachis hypogaea HOM05D005435 ORTHO05D005134 4.4e-08 63.9 47 72.3
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 5.8e-08 63.5 284 29.6
Medtr4g081620 Medicago truncatula HOM05D004380 ORTHO05D005134 1.9e-06 58.5 85 48.2


User provided reference genes

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