Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G010600 Citrullus lanatus HOM05D004789 ORTHO05D006078 0.0e+00 1282.7 658 100.0
MELO3C010050.2 Cucumis melo HOM05D004789 ORTHO05D006078 6.7e-274 947.2 569 85.8
CsaV3_1G044470 Cucumis sativus L. HOM05D004789 ORTHO05D006078 2.0e-262 909.1 468 95.5
Sed0025011 Sechium edule HOM05D004789 ORTHO05D006078 7.2e-252 874.0 520 86.0
Eucgr.C00113 Eucalyptus grandis HOM05D004789 ORTHO05D006078 2.1e-243 845.9 515 79.0
RcHm_v2.0_Chr3g0447811 Rosa chinensis HOM05D004789 ORTHO05D006078 1.8e-242 842.8 515 78.4
Lalb_Chr03g0038671 Lupinus albus HOM05D004789 ORTHO05D006078 4.0e-242 841.6 540 76.3
MELO3C010048.2 Cucumis melo HOM05D004789 ORTHO05D006078 1.5e-241 839.7 505 80.2
QL01p049601 Quercus lobata HOM05D004789 ORTHO05D006078 2.6e-241 839.0 509 80.2
Thecc.05G194100 Theobroma cacao HOM05D004789 ORTHO05D006078 2.2e-240 835.9 515 78.8
COL.COLO4_38035 Corchorus olitorius HOM05D004789 ORTHO05D006078 2.8e-240 835.5 515 78.3
FvH4_6g00440 Fragaria vesca HOM05D004789 ORTHO05D006078 4.9e-240 834.7 505 78.8
Manes.12G005100 Manihot esculenta HOM05D004789 ORTHO05D006078 8.3e-240 833.9 515 78.3
arahy.Tifrunner.gnm1.ann1.537LAH Arachis hypogaea HOM05D004789 ORTHO05D006078 3.1e-239 832.0 526 76.2
arahy.Tifrunner.gnm1.ann1.66TKXZ Arachis hypogaea HOM05D004789 ORTHO05D006078 3.1e-239 832.0 526 76.2
MD04G1245400 Malus domestica HOM05D004789 ORTHO05D006078 5.4e-239 831.2 510 78.0
Gorai.004G263000 Gossypium raimondii HOM05D004789 ORTHO05D006078 7.0e-239 830.9 509 78.2
Phvul.008G053900 Phaseolus vulgaris HOM05D004789 ORTHO05D006078 9.1e-239 830.5 525 76.6
VMungo1383G0580 Vigna mungo HOM05D004789 ORTHO05D006078 9.1e-239 830.5 525 76.4
Gohir.D08G246500 Gossypium hirsutum HOM05D004789 ORTHO05D006078 1.2e-238 830.1 509 78.2
FAN09G1869 Fragaria x ananassa HOM05D004789 ORTHO05D006078 4.5e-238 828.2 560 73.0
MD13G1061000 Malus domestica HOM05D004789 ORTHO05D006078 1.0e-237 827.0 510 78.0
GSVIVG01019077001 Vitis vinifera HOM05D004789 ORTHO05D006078 6.6e-237 824.3 515 77.3
Prupe.6G362000 Prunus persica HOM05D004789 ORTHO05D006078 1.9e-236 822.8 510 78.0
Ca_07992_v3 Cicer arietinum L. HOM05D004789 ORTHO05D006078 4.2e-236 821.6 514 75.9
Ciclev10011346m.g Citrus clementina HOM05D004789 ORTHO05D006078 1.2e-235 820.1 522 77.0
Duzib106G1853 Durio zibethinus HOM05D004789 ORTHO05D006078 1.2e-235 820.1 509 77.6
Potri.019G054000 Populus trichocarpa HOM05D004789 ORTHO05D006078 1.2e-235 820.1 517 76.2
vmacro19979 Vaccinium macrocarpon HOM05D004789 ORTHO05D006078 4.7e-235 818.1 516 76.0
TPR.G10693 Trifolium pratense HOM05D004789 ORTHO05D006078 6.1e-235 817.8 516 75.8
Medtr7g080117 Medicago truncatula HOM05D004789 ORTHO05D006078 8.0e-235 817.4 515 75.9
Dinv29093 Davidia involucrata HOM05D004789 ORTHO05D006078 1.0e-234 817.0 512 76.6
CSS0046891 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 3.0e-234 815.5 510 76.5
TWI36G0056 Tripterygium wilfordii HOM05D004789 ORTHO05D006078 4.0e-234 815.1 543 74.0
Actinidia06832 Actinidia chinensis HOM05D004789 ORTHO05D006078 5.2e-234 814.7 515 75.9
CSS0025571 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 6.8e-234 814.3 510 76.5
PGR083G2717 Punica granatum HOM05D004789 ORTHO05D006078 2.0e-233 812.8 516 77.1
PGR092G0005 Punica granatum HOM05D004789 ORTHO05D006078 2.0e-233 812.8 516 77.1
Atru.BG.270.p Acer truncatum HOM05D004789 ORTHO05D006078 3.4e-233 812.0 506 78.9
CANSAT54G2477 Cannabis sativa HOM05D004789 ORTHO05D006078 3.4e-233 812.0 505 77.6
Glyma.09G249800 Glycine max HOM05D004789 ORTHO05D006078 9.8e-233 810.4 525 74.9
Oeu009739.1 Olea europaea HOM05D004789 ORTHO05D006078 1.7e-232 809.7 516 76.0
THA.LOC104801872 Tarenaya hassleriana HOM05D004789 ORTHO05D006078 2.2e-232 809.3 544 72.6
Cc09_g03720 Coffea canephora HOM05D004789 ORTHO05D006078 3.7e-232 808.5 515 75.9
PSO675G5907 Papaver somniferum HOM05D004789 ORTHO05D006078 6.3e-232 807.7 510 75.9
Lj1g0000623 Lotus japonicus HOM05D004789 ORTHO05D006078 5.4e-231 804.7 593 68.6
Migut.F02116 Erythranthe guttata HOM05D004789 ORTHO05D006078 4.6e-230 801.6 516 76.0
Aqoxy2G01476 Aquilegia oxysepala HOM05D004789 ORTHO05D006078 1.3e-229 800.0 511 74.8
Hma1.2p1_0609F.1_g188420 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 2.3e-229 799.3 512 75.0
Sabra19G0063100 Salix brachista HOM05D004789 ORTHO05D006078 3.9e-229 798.5 515 75.0
Lsat_1_v5_gn_3_24661 Lactuca sativa HOM05D004789 ORTHO05D006078 1.5e-228 796.6 519 73.2
PGR119G2005 Punica granatum HOM05D004789 ORTHO05D006078 9.5e-228 793.9 517 75.2
SGA_v2.0_scaffold11G05812 Striga asiatica HOM05D004789 ORTHO05D006078 1.2e-227 793.5 516 75.0
CDE05G3244 Ceratophyllum demersum HOM05D004789 ORTHO05D006078 2.1e-227 792.7 523 72.7
CAN.G1807.2 Capsicum annuum HOM05D004789 ORTHO05D006078 2.8e-227 792.3 514 73.9
SGA_v2.0_scaffold14G07118 Striga asiatica HOM05D004789 ORTHO05D006078 8.0e-227 790.8 516 75.0
MBI11_g05799_MAGBIO Magnolia biondii HOM05D004789 ORTHO05D006078 1.0e-226 790.4 502 75.5
Rhsim05G0170800 Rhododendron simsii HOM05D004789 ORTHO05D006078 5.2e-226 788.1 511 74.8
Solyc04g056540.3 Solanum lycopersicum HOM05D004789 ORTHO05D006078 5.2e-226 788.1 514 73.3
Sc16g0010430 Simmondsia chinensis HOM05D004789 ORTHO05D006078 6.8e-226 787.7 505 74.7
Carub.0005s1348 Capsella rubella HOM05D004789 ORTHO05D006078 8.9e-226 787.3 511 75.0
Aa31csc271G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 3.4e-225 785.4 521 72.9
Sed0000944 Sechium edule HOM05D004789 ORTHO05D006078 2.2e-224 782.7 461 83.1
Nitab4.5_0000083g0070 Nicotiana tabacum HOM05D004789 ORTHO05D006078 6.4e-224 781.2 514 72.6
Sp5g14500 Schrenkiella parvula HOM05D004789 ORTHO05D006078 6.4e-224 781.2 541 72.1
Hund21904 Selenicereus undatus HOM05D004789 ORTHO05D006078 2.4e-223 779.2 515 73.6
CiPaw.07G081200 Carya illinoinensis HOM05D004789 ORTHO05D006078 3.2e-223 778.9 463 81.0
Nitab4.5_0001435g0010 Nicotiana tabacum HOM05D004789 ORTHO05D006078 3.2e-223 778.9 514 72.4
AT3G47390 Arabidopsis thaliana HOM05D004789 ORTHO05D006078 4.1e-223 778.5 511 75.0
Sopen04g025480 Solanum pennellii HOM05D004789 ORTHO05D006078 4.1e-223 778.5 514 72.0
AL5G26580 Arabidopsis lyrata HOM05D004789 ORTHO05D006078 7.0e-223 777.7 511 74.8
BcaC01g01832 Brassica carinata HOM05D004789 ORTHO05D006078 3.5e-222 775.4 510 74.3
ATR0661G474 Amborella trichopoda HOM05D004789 ORTHO05D006078 4.6e-222 775.0 512 71.7
BraA06t25110Z Brassica rapa HOM05D004789 ORTHO05D006078 4.6e-222 775.0 509 74.3
Thhalv10010225m.g Eutrema salsugineum HOM05D004789 ORTHO05D006078 4.6e-222 775.0 541 71.7
HanXRQChr06g0173981 Helianthus annuus HOM05D004789 ORTHO05D006078 4.6e-222 775.0 510 71.6
HanXRQChr17g0538711 Helianthus annuus HOM05D004789 ORTHO05D006078 2.3e-221 772.7 510 72.4
A06p20290 Brassica napus HOM05D004789 ORTHO05D006078 3.0e-221 772.3 510 74.3
BcaB01g00932 Brassica carinata HOM05D004789 ORTHO05D006078 8.6e-221 770.8 511 73.8
BolC3t19438H Brassica oleracea HOM05D004789 ORTHO05D006078 8.6e-221 770.8 511 74.2
C03p71470 Brassica napus HOM05D004789 ORTHO05D006078 3.3e-220 768.8 511 73.8
AUR62000303 Chenopodium quinoa HOM05D004789 ORTHO05D006078 7.3e-220 767.7 519 71.3
Aa31sc60G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 1.6e-219 766.5 517 72.3
Glyma.18G242600 Glycine max HOM05D004789 ORTHO05D006078 6.2e-219 764.6 458 80.1
Gohir.A08G226100 Gossypium hirsutum HOM05D004789 ORTHO05D006078 2.3e-218 762.7 457 79.4
EL10Ac4g09992 Beta vulgaris HOM05D004789 ORTHO05D006078 5.2e-218 761.5 537 69.3
HanXRQChr06g0174041 Helianthus annuus HOM05D004789 ORTHO05D006078 1.5e-217 760.0 511 70.5
DCAR_020684 Daucus carota HOM05D004789 ORTHO05D006078 1.7e-216 756.5 516 70.3
AUR62006648 Chenopodium quinoa HOM05D004789 ORTHO05D006078 8.3e-216 754.2 534 69.1
unitig_0.g1013 Utricularia gibba HOM05D004789 ORTHO05D006078 3.0e-213 745.7 540 68.0
Peaxi162Scf00048g00311 Petunia axillaris HOM05D004789 ORTHO05D006078 4.3e-212 741.9 564 65.8
Hund07352 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.6e-211 740.0 564 64.7
TAR626G0377 Trochodendron aralioides HOM05D004789 ORTHO05D006078 4.6e-206 721.8 510 69.8
CARHR156030 Cardamine hirsuta HOM05D004789 ORTHO05D006078 6.0e-206 721.5 468 75.6
PSO017G6674 Papaver somniferum HOM05D004789 ORTHO05D006078 2.3e-205 719.5 510 69.4
Os02g0473000 Oryza sativa ssp. japonica HOM05D004789 ORTHO05D006078 9.9e-201 704.1 481 69.6
HPP92_008120 Vanilla planifolia HOM05D004789 ORTHO05D006078 1.8e-194 683.3 509 65.2
Ah.06g195430 Amaranthus hybridus HOM05D004789 ORTHO05D006078 1.2e-190 670.6 514 64.2
SalBow1G3031 Salvia bowleyana HOM05D004789 ORTHO05D006078 7.3e-188 661.4 433 74.4
Mapoly0151s0033 Marchantia polymorpha HOM05D004789 ORTHO05D006078 1.8e-178 630.2 512 60.5
Zm00001eb240960 Zea mays HOM05D004789 ORTHO05D006078 4.0e-178 629.0 420 71.2
Haze_04568 Corylus avellana HOM05D004789 ORTHO05D006078 6.9e-178 628.2 501 64.7
Psat3g102920 Pisum sativum HOM05D004789 ORTHO05D006078 5.8e-177 625.2 390 76.7
Pp3c21_670 Physcomitrium patens HOM05D004789 ORTHO05D006078 1.0e-176 624.4 552 57.4
SMO141G0244 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 1.2e-174 617.5 512 59.8
Pp3c19_9150 Physcomitrium patens HOM05D004789 ORTHO05D006078 3.5e-166 589.3 514 57.6
AagrBONN_evm.TU.Sc2ySwM_117.447 Anthoceros agrestis HOM05D004789 ORTHO05D006078 3.9e-165 585.9 468 61.3
CBR_g21226 Chara braunii HOM05D004789 ORTHO05D006078 2.2e-160 570.1 515 55.9
Hma1.2p1_0609F.1_g188430 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 5.5e-159 565.5 363 75.5
Pp3c15_7710 Physcomitrium patens HOM05D004789 ORTHO05D006078 9.4e-159 564.7 507 57.0
Lj2C731T11 Lonicera japonica HOM05D004789 ORTHO05D006078 8.2e-147 525.0 325 76.3
Aa31sc348G30 Aethionema arabicum HOM05D004789 ORTHO05D006078 5.7e-140 502.3 441 58.5
PGSC0003DMG400010518 Solanum tuberosum HOM05D004789 ORTHO05D006078 3.1e-130 469.9 309 74.1
Lsat_1_v5_gn_8_109000 Lactuca sativa HOM05D004789 ORTHO05D006078 5.4e-130 469.2 343 66.2
PRCOL_00003473 Prasinoderma coloniale HOM05D004789 ORTHO05D006078 2.5e-127 460.3 561 46.9
Pp3c9_9570 Physcomitrium patens HOM05D004789 ORTHO05D006078 1.4e-125 454.5 401 56.9
SHI13715 Sapria himalayana HOM05D004789 ORTHO05D006078 1.1e-122 444.9 339 63.1
MCO11G683 Micromonas commoda HOM05D004789 ORTHO05D006078 6.6e-120 435.6 544 46.0
ATR0804G049 Amborella trichopoda HOM05D004789 ORTHO05D006078 1.4e-117 427.9 346 63.3
Cre17.g728950 Chlamydomonas reinhardtii HOM05D004789 ORTHO05D006078 5.2e-117 426.0 774 36.6
Cpa.g.sc2508.1 Carica papaya HOM05D004789 ORTHO05D006078 4.4e-116 422.9 268 77.2
FAN14G5139 Fragaria x ananassa HOM05D004789 ORTHO05D006078 3.5e-113 413.3 239 81.6
Nn1g09737 Nelumbo nucifera HOM05D004789 ORTHO05D006078 2.2e-107 394.0 306 66.3
Ah.01g017460 Amaranthus hybridus HOM05D004789 ORTHO05D006078 3.6e-102 376.7 476 46.0
SEGI_29409 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 1.9e-98 364.4 362 55.0
SMO145G0191 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 1.5e-95 354.8 331 53.2
Nn1g09776 Nelumbo nucifera HOM05D004789 ORTHO05D006078 1.3e-88 331.6 214 71.0
Lsat_1_v5_gn_7_32541 Lactuca sativa HOM05D004789 ORTHO05D006078 6.9e-85 319.3 247 66.0
SEGI_33759 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 9.9e-84 315.5 225 66.2
Cpa.g.sc39.15 Carica papaya HOM05D004789 ORTHO05D006078 1.3e-70 271.9 164 78.7
SEGI_15354 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 2.6e-52 211.1 167 59.9
ECA236G3464 Erigeron canadensis HOM05D004789 ORTHO05D006078 1.0e-40 172.6 126 66.7
Actinidia39978 Actinidia chinensis HOM05D004789 ORTHO05D006078 3.3e-39 167.5 127 69.3
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 2.4e-37 161.4 327 31.8
Hund24180 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.0e-35 156.0 252 37.3
Hund01197 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.4e-34 152.1 247 38.9
Hund01450 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.9e-34 151.8 171 47.4
Hund01346 Selenicereus undatus HOM05D004789 ORTHO05D006078 3.2e-34 151.0 274 34.7
SEGI_07080 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 5.5e-34 150.2 127 55.9
Cpa.g.sc39.16 Carica papaya HOM05D004789 ORTHO05D006078 1.5e-31 142.1 78 82.1
SalBow1G4379 Salvia bowleyana HOM05D004789 ORTHO05D006078 1.4e-29 135.6 85 70.6
Pp3c7_11900 Physcomitrium patens HOM05D005010 ORTHO05D006065 3.7e-22 110.9 338 29.0
CBR_g12386 Chara braunii HOM05D005010 ORTHO05D006065 1.4e-21 109.0 343 30.0
Mapoly0008s0021 Marchantia polymorpha HOM05D005010 ORTHO05D006065 2.7e-20 104.8 303 30.0
Hma1.2p1_0199F.1_g085710 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 1.0e-19 102.8 62 71.0
AagrBONN_evm.TU.Sc2ySwM_228.296 Anthoceros agrestis HOM05D005010 ORTHO05D006065 1.9e-18 98.6 304 29.6
SEGI_24407 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 4.2e-18 97.4 98 46.9
CDE05G2962 Ceratophyllum demersum HOM05D004789 ORTHO05D006078 1.4e-16 92.4 88 53.4
Gohir.A08G032600 Gossypium hirsutum HOM05D005010 ORTHO05D006065 1.5e-15 89.0 328 26.8
SMO119G0342 Selaginella moellendorffii HOM05D005010 ORTHO05D006065 1.5e-15 89.0 336 27.4
TAR629G1525 Trochodendron aralioides HOM05D005010 ORTHO05D006065 4.8e-14 84.0 293 25.3
Haze_15489 Corylus avellana HOM05D005010 ORTHO05D006065 6.3e-14 83.6 327 23.9
PSO782G1000 Papaver somniferum HOM05D005010 ORTHO05D006065 4.1e-13 80.9 250 28.8
MD07G1084500 Malus domestica HOM05D005010 ORTHO05D006065 9.1e-13 79.7 328 22.3
HanXRQChr11g0327871 Helianthus annuus HOM05D004789 ORTHO05D006078 1.2e-12 79.3 63 60.3
CANSAT21G0157 Cannabis sativa HOM05D005010 ORTHO05D006065 2.0e-12 78.6 328 24.1
Cc02_g37880 Coffea canephora HOM05D005010 ORTHO05D006065 2.7e-12 78.2 327 22.3
VMungo0331G1782 Vigna mungo HOM05D005010 ORTHO05D006065 2.7e-12 78.2 328 23.2
PGR031G1307 Punica granatum HOM05D005010 ORTHO05D006065 5.9e-12 77.0 327 22.6
Nitab4.5_0007690g0020 Nicotiana tabacum HOM05D005010 ORTHO05D006065 1.0e-11 76.3 325 23.4
Duzib138G0257 Durio zibethinus HOM05D005010 ORTHO05D006065 3.8e-11 74.3 284 25.7
Ca_21537_v3 Cicer arietinum L. HOM05D004591 ORTHO05D005749 5.0e-11 73.9 329 22.2
ECA234G3587 Erigeron canadensis HOM05D005010 ORTHO05D006065 8.6e-11 73.2 324 23.5
Medtr4g119220 Medicago truncatula HOM05D005010 ORTHO05D006065 1.9e-10 72.0 331 23.3
Sed0013033 Sechium edule HOM05D005010 ORTHO05D006065 1.9e-10 72.0 327 23.5
HanXRQChr16g0522801 Helianthus annuus HOM05D005010 ORTHO05D006065 2.5e-10 71.6 323 22.9
Cfa003937 Carpinus fangiana HOM05D005010 ORTHO05D006065 4.2e-10 70.9 256 25.4
CiPaw.01G060000 Carya illinoinensis HOM05D005010 ORTHO05D006065 4.2e-10 70.9 293 25.9
MELO3C021216.2 Cucumis melo HOM05D005010 ORTHO05D006065 7.2e-10 70.1 323 22.6
Sopen01g035780 Solanum pennellii HOM05D004789 ORTHO05D051096 9.5e-10 69.7 56 69.6
Hund26061 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.2e-09 69.3 124 41.1
Solyc01g089930.2 Solanum lycopersicum HOM05D004789 ORTHO05D051096 1.2e-09 69.3 56 69.6
ClCG06G003790 Citrullus lanatus HOM05D005010 ORTHO05D006065 1.6e-09 68.9 326 22.7
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 2.8e-09 68.2 61 52.5
Ah.05g180680 Amaranthus hybridus HOM05D005010 ORTHO05D006065 1.0e-08 66.2 327 23.2
Aqoxy3G02565 Aquilegia oxysepala HOM05D005010 ORTHO05D006065 1.0e-08 66.2 255 24.3
Os03g0117200 Oryza sativa ssp. japonica HOM05D005010 ORTHO05D006065 1.4e-08 65.9 333 24.0
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 1.8e-08 65.5 44 63.6
Hund16928 Selenicereus undatus HOM05D005010 ORTHO05D006065 2.3e-08 65.1 327 21.4
Hund12586 Selenicereus undatus HOM05D004789 ORTHO05D006078 6.8e-08 63.5 84 41.7
HPP92_014015 Vanilla planifolia HOM05D005010 ORTHO05D006065 1.2e-07 62.8 188 27.7
Sopen01g029920 Solanum pennellii HOM05D004789 ORTHO05D393610 3.4e-07 61.2 57 56.1
Nn2g11699 Nelumbo nucifera HOM05D005010 ORTHO05D006065 7.5e-07 60.1 325 20.6
Solyc01g094230.4 Solanum lycopersicum HOM05D004789 ORTHO05D390785 1.3e-06 59.3 43 67.4
Sc23g0002970 Simmondsia chinensis HOM05D005010 ORTHO05D006065 2.8e-06 58.2 253 24.9


User provided reference genes

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