Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G010440 Citrullus lanatus HOM05D002653 ORTHO05D002623 8.6e-60 233.4 115 100.0
CsaV3_1G044350 Cucumis sativus L. HOM05D002653 ORTHO05D002623 9.0e-25 117.1 81 77.8
MELO3C010033.2 Cucumis melo HOM05D002653 ORTHO05D002623 3.4e-24 115.2 59 96.6
Sed0013773 Sechium edule HOM05D002653 ORTHO05D002623 1.3e-23 113.2 59 96.6
GSVIVG01019371001 Vitis vinifera HOM05D002653 ORTHO05D002623 2.9e-23 112.1 59 91.5
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 1.4e-22 109.8 59 89.8
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 1.9e-22 109.4 59 91.5
CiPaw.06G000200 Carya illinoinensis HOM05D002653 ORTHO05D002623 1.9e-22 109.4 59 91.5
Atru.chr8.1040 Acer truncatum HOM05D002653 ORTHO05D002623 3.2e-22 108.6 60 88.3
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 3.2e-22 108.6 59 88.1
Ciclev10012577m.g Citrus clementina HOM05D002653 ORTHO05D002623 3.2e-22 108.6 59 91.5
Solyc11g045140.1 Solanum lycopersicum HOM05D002653 ORTHO05D002623 3.2e-22 108.6 59 88.1
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 3.2e-22 108.6 59 88.1
CSS0026519 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 4.2e-22 108.2 59 88.1
CSS0038262 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 4.2e-22 108.2 59 88.1
Cc11_g00310 Coffea canephora HOM05D002653 ORTHO05D002623 5.5e-22 107.8 93 62.4
Hma1.2p1_1074F.1_g254380 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 5.5e-22 107.8 59 86.4
Nitab4.5_0004202g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 7.2e-22 107.5 67 79.1
Peaxi162Scf00126g00051 Petunia axillaris HOM05D002653 ORTHO05D002623 9.3e-22 107.1 59 86.4
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 1.6e-21 106.3 59 84.7
Migut.L00787 Erythranthe guttata HOM05D002653 ORTHO05D002623 2.1e-21 105.9 59 84.7
Migut.L00841 Erythranthe guttata HOM05D002653 ORTHO05D002623 2.1e-21 105.9 59 84.7
Nitab4.5_0006025g0020 Nicotiana tabacum HOM05D002653 ORTHO05D002623 2.1e-21 105.9 67 77.6
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 2.1e-21 105.9 59 86.4
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 2.7e-21 105.5 59 84.7
Oeu013190.1 Olea europaea HOM05D002653 ORTHO05D002623 2.7e-21 105.5 59 84.7
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 2.7e-21 105.5 59 86.4
THA.LOC104814962 Tarenaya hassleriana HOM05D002653 ORTHO05D002623 2.7e-21 105.5 59 84.7
vmacro03484 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 2.7e-21 105.5 59 84.7
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 3.5e-21 105.1 59 84.7
BcaNung01253 Brassica carinata HOM05D002653 ORTHO05D002623 3.5e-21 105.1 59 84.7
A06p35550 Brassica napus HOM05D002653 ORTHO05D002623 3.5e-21 105.1 59 84.7
C07p42990 Brassica napus HOM05D002653 ORTHO05D002623 3.5e-21 105.1 59 84.7
BolC7t44828H Brassica oleracea HOM05D002653 ORTHO05D002623 3.5e-21 105.1 59 84.7
BraA06t26480Z Brassica rapa HOM05D002653 ORTHO05D002623 3.5e-21 105.1 59 84.7
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 4.6e-21 104.8 59 83.1
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 4.6e-21 104.8 59 84.7
Eucgr.K01358 Eucalyptus grandis HOM05D002653 ORTHO05D002623 6.1e-21 104.4 59 84.7
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 6.1e-21 104.4 59 88.1
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 7.9e-21 104.0 59 84.7
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 1.0e-20 103.6 59 83.1
Hund04713 Selenicereus undatus HOM05D002653 ORTHO05D002623 1.0e-20 103.6 62 80.6
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 1.3e-20 103.2 59 84.7
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 1.3e-20 103.2 59 81.4
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 1.3e-20 103.2 59 81.4
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 2.3e-20 102.4 93 59.1
TWI34G1636 Tripterygium wilfordii HOM05D002653 ORTHO05D002623 2.3e-20 102.4 59 86.4
Nitab4.5_0020732g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 3.0e-20 102.1 67 74.6
SGA_v2.0_scaffold131G34416 Striga asiatica HOM05D002653 ORTHO05D002623 5.1e-20 101.3 58 81.0
Nitab4.5_0004950g0030 Nicotiana tabacum HOM05D002653 ORTHO05D002623 6.7e-20 100.9 60 80.0
HPP92_001359 Vanilla planifolia HOM05D002653 ORTHO05D002623 1.5e-19 99.8 59 83.1
FAN05G4926 Fragaria x ananassa HOM05D002653 ORTHO05D002623 4.3e-19 98.2 93 60.2
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 4.3e-19 98.2 59 78.0
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 5.7e-19 97.8 93 60.2
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 5.7e-19 97.8 93 60.2
FAN09G4442 Fragaria x ananassa HOM05D002653 ORTHO05D002623 5.7e-19 97.8 93 60.2
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 5.7e-19 97.8 93 60.2
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 5.7e-19 97.8 93 60.2
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 5.7e-19 97.8 59 78.0
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 5.7e-19 97.8 59 78.0
HPP92_001397 Vanilla planifolia HOM05D002653 ORTHO05D002623 7.4e-19 97.4 57 84.2
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 1.3e-18 96.7 59 76.3
RcHm_v2.0_Chr2g0148301 Rosa chinensis HOM05D002653 ORTHO05D002623 1.3e-18 96.7 59 78.0
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 2.2e-18 95.9 62 77.4
Lj4g0020533 Lotus japonicus HOM05D002653 ORTHO05D002623 2.2e-18 95.9 59 86.4
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 2.2e-18 95.9 59 86.4
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 4.8e-18 94.7 59 84.7
Phvul.002G234312 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 4.8e-18 94.7 59 84.7
Phvul.002G328604 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 4.8e-18 94.7 59 84.7
Zm00001eb260910 Zea mays HOM05D002653 ORTHO05D002623 4.8e-18 94.7 93 60.2
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 6.3e-18 94.4 59 84.7
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 8.2e-18 94.0 59 84.7
Psat2g178200 Pisum sativum HOM05D002653 ORTHO05D002623 8.2e-18 94.0 59 84.7
arahy.Tifrunner.gnm1.ann1.G9A448 Arachis hypogaea HOM05D002653 ORTHO05D002623 1.4e-17 93.2 59 84.7
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 1.8e-17 92.8 59 83.1
MD17G1156800 Malus domestica HOM05D002653 ORTHO05D002623 2.4e-17 92.4 59 74.6
Psat5g290960 Pisum sativum HOM05D000001 ORTHO05D001705 2.4e-17 92.4 59 83.1
Mapoly0009s0011 Marchantia polymorpha HOM05D002653 ORTHO05D002623 6.9e-17 90.9 93 53.8
VMungo0251G2657 Vigna mungo HOM05D002653 ORTHO05D002623 1.5e-16 89.7 72 69.4
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 3.4e-16 88.6 59 69.5
PSO782G1285 Papaver somniferum HOM05D002653 ORTHO05D002623 3.4e-16 88.6 59 69.5
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 1.0e-15 87.0 59 67.8
Duzib114G0204 Durio zibethinus HOM05D002653 ORTHO05D002623 1.7e-15 86.3 59 64.4
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 1.7e-15 86.3 59 67.8
COL.COLO4_33574 Corchorus olitorius HOM05D002653 ORTHO05D002623 2.2e-15 85.9 59 66.1
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 2.2e-15 85.9 59 66.1
Gohir.D04G020301 Gossypium hirsutum HOM05D002653 ORTHO05D002623 2.2e-15 85.9 59 66.1
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 2.2e-15 85.9 59 66.1
SMO353G0260 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 2.9e-15 85.5 70 61.4
AT5G24740 Arabidopsis thaliana HOM05D002653 ORTHO05D002623 3.8e-15 85.1 62 71.0
CBR_g4651 Chara braunii HOM05D002653 ORTHO05D002623 3.8e-15 85.1 94 51.1
AUR62026805 Chenopodium quinoa HOM05D002653 ORTHO05D002623 2.1e-13 79.3 58 70.7
Os08g0116700 Oryza sativa ssp. japonica HOM05D002653 ORTHO05D002623 4.6e-13 78.2 93 50.5
AUR62013467 Chenopodium quinoa HOM05D002653 ORTHO05D002623 6.1e-13 77.8 58 69.0
QL04p064992 Quercus lobata HOM05D002653 ORTHO05D002623 1.8e-12 76.3 62 62.9
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 4.3e-11 71.6 61 67.2
Aqoxy2G01525 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 7.4e-11 70.9 56 62.5
Pp3c15_25690 Physcomitrium patens HOM05D002653 ORTHO05D002623 9.7e-11 70.5 67 55.2
Cre17.g727600 Chlamydomonas reinhardtii HOM05D002653 ORTHO05D002623 2.4e-09 65.9 60 55.0
MCO01G574 Micromonas commoda HOM05D002653 ORTHO05D002623 2.9e-07 58.9 59 44.1
unitig_8.g3109 Utricularia gibba HOM05D002653 ORTHO05D002623 5.0e-07 58.2 32 78.1
CSS0044031 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D014543 8.5e-07 57.4 32 78.1
CDE12G0934 Ceratophyllum demersum HOM05D002653 ORTHO05D002623 8.5e-07 57.4 35 74.3
Nitab4.5_0002474g0040 Nicotiana tabacum HOM05D002653 ORTHO05D002623 1.1e-06 57.0 42 71.4
EL10Ac5g12216 Beta vulgaris HOM05D001092 ORTHO05D000923 7.2e-06 54.3 68 42.6
CDE02G1948 Ceratophyllum demersum HOM05D001092 ORTHO05D000923 7.2e-06 54.3 67 41.8
SEGI_32127 Sequoiadendron giganteum HOM05D001092 ORTHO05D000923 7.2e-06 54.3 67 44.8
Prupe.5G050700 Prunus persica HOM05D001092 ORTHO05D000923 9.4e-06 53.9 68 42.6


User provided reference genes

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