Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G004020 Citrullus lanatus HOM05D007048 ORTHO05D008811 1.5e-69 266.2 139 100.0
CsaV3_1G009910 Cucumis sativus L. HOM05D007048 ORTHO05D008811 1.4e-56 223.0 139 86.3
MELO3C035737.2 Cucumis melo HOM05D007048 ORTHO05D008811 1.3e-54 216.5 139 84.2
Sed0017197 Sechium edule HOM05D007048 ORTHO05D008811 9.2e-48 193.7 139 76.3
Cfa018710 Carpinus fangiana HOM05D007048 ORTHO05D008811 3.1e-43 178.7 130 73.8
Actinidia18303 Actinidia chinensis HOM05D007048 ORTHO05D008811 4.0e-43 178.3 133 69.9
Dinv23221 Davidia involucrata HOM05D007048 ORTHO05D008811 8.9e-43 177.2 133 71.4
MD06G1131300 Malus domestica HOM05D007048 ORTHO05D008811 8.9e-43 177.2 135 73.3
Haze_07101 Corylus avellana HOM05D007048 ORTHO05D008811 1.5e-42 176.4 133 72.9
RcHm_v2.0_Chr7g0188741 Rosa chinensis HOM05D007048 ORTHO05D008811 1.5e-42 176.4 133 72.9
Hma1.2p1_0664F.1_g199000 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 2.6e-42 175.6 132 70.5
TWI39G0039 Tripterygium wilfordii HOM05D007048 ORTHO05D008811 2.6e-42 175.6 134 68.7
Prupe.5G142300 Prunus persica HOM05D007048 ORTHO05D008811 4.4e-42 174.9 135 71.9
Manes.14G045100 Manihot esculenta HOM05D007048 ORTHO05D008811 9.8e-42 173.7 133 71.4
Migut.D01184 Erythranthe guttata HOM05D007048 ORTHO05D008811 2.9e-41 172.2 133 69.2
GSVIVG01008645001 Vitis vinifera HOM05D007048 ORTHO05D008811 6.4e-41 171.0 137 68.6
SalBow1G8421 Salvia bowleyana HOM05D007048 ORTHO05D008811 1.4e-40 169.9 135 69.6
CANSAT56G3502 Cannabis sativa HOM05D007048 ORTHO05D008811 3.2e-40 168.7 135 69.6
CANSAT56G3230 Cannabis sativa HOM05D007048 ORTHO05D008811 4.1e-40 168.3 135 69.6
Thecc.03G140000 Theobroma cacao HOM05D007048 ORTHO05D008811 5.4e-40 167.9 135 68.9
Rhsim08G0196900 Rhododendron simsii HOM05D007048 ORTHO05D008811 7.0e-40 167.5 128 69.5
vmacro19180 Vaccinium macrocarpon HOM05D007048 ORTHO05D008811 1.2e-39 166.8 120 72.5
TWI14G0368 Tripterygium wilfordii HOM05D007048 ORTHO05D008811 1.6e-39 166.4 132 65.2
TAR475G0007 Trochodendron aralioides HOM05D007048 ORTHO05D008811 1.6e-39 166.4 123 71.5
TAR629G1913 Trochodendron aralioides HOM05D007048 ORTHO05D008811 1.6e-39 166.4 123 71.5
Sabra15G0126100 Salix brachista HOM05D007048 ORTHO05D008811 2.7e-39 165.6 132 65.9
Duzib068G0404 Durio zibethinus HOM05D007048 ORTHO05D008811 4.6e-39 164.9 128 69.5
Potri.015G105900 Populus trichocarpa HOM05D007048 ORTHO05D008811 6.0e-39 164.5 127 68.5
FAN18G3224 Fragaria x ananassa HOM05D007048 ORTHO05D008811 7.8e-39 164.1 123 73.2
Nitab4.5_0003119g0030 Nicotiana tabacum HOM05D007048 ORTHO05D008811 1.3e-38 163.3 127 67.7
Nitab4.5_0002584g0070 Nicotiana tabacum HOM05D007048 ORTHO05D008811 1.7e-38 162.9 127 66.9
QL10p000556 Quercus lobata HOM05D007048 ORTHO05D008811 1.7e-38 162.9 129 69.0
Cc04_g05890 Coffea canephora HOM05D007048 ORTHO05D008811 5.0e-38 161.4 137 63.5
Peaxi162Scf01168g00014 Petunia axillaris HOM05D007048 ORTHO05D008811 5.0e-38 161.4 128 66.4
Sopen07g028330 Solanum pennellii HOM05D007048 ORTHO05D008820 8.6e-38 160.6 123 68.3
CiPaw.11G000300 Carya illinoinensis HOM05D007048 ORTHO05D008811 1.1e-37 160.2 132 67.4
Gohir.D07G051200 Gossypium hirsutum HOM05D007048 ORTHO05D008811 1.1e-37 160.2 133 67.7
Gorai.001G054300 Gossypium raimondii HOM05D007048 ORTHO05D008811 1.1e-37 160.2 133 67.7
Atru.chr6.1912 Acer truncatum HOM05D007048 ORTHO05D008811 1.5e-37 159.8 133 63.9
FAN08G0367 Fragaria x ananassa HOM05D006891 ORTHO05D008671 1.5e-37 159.8 129 69.0
Ciclev10033023m.g Citrus clementina HOM05D007048 ORTHO05D008811 1.9e-37 159.5 122 70.5
Gohir.A07G046900 Gossypium hirsutum HOM05D007048 ORTHO05D008811 2.5e-37 159.1 133 66.9
Cpa.g.sc13.165 Carica papaya HOM05D007048 ORTHO05D008811 4.3e-37 158.3 133 64.7
Hund10045 Selenicereus undatus HOM05D007048 ORTHO05D008811 4.3e-37 158.3 137 61.3
PGSC0003DMG400018389 Solanum tuberosum HOM05D007048 ORTHO05D008811 5.6e-37 157.9 123 66.7
CAN.G521.6 Capsicum annuum HOM05D007048 ORTHO05D008811 7.3e-37 157.5 127 64.6
Solyc07g054400.3 Solanum lycopersicum HOM05D007048 ORTHO05D008811 9.5e-37 157.1 123 67.5
Sp6g13100 Schrenkiella parvula HOM05D007048 ORTHO05D008811 1.2e-36 156.8 134 65.7
FAN04G3007 Fragaria x ananassa HOM05D007048 ORTHO05D008811 6.2e-36 154.5 130 68.5
A03p16450 Brassica napus HOM05D007048 ORTHO05D008811 8.1e-36 154.1 123 66.7
BraA03t10934Z Brassica rapa HOM05D007048 ORTHO05D008811 8.1e-36 154.1 123 66.7
Sc22g0003410 Simmondsia chinensis HOM05D007048 ORTHO05D008811 8.1e-36 154.1 127 67.7
BcaNung07188 Brassica carinata HOM05D007048 ORTHO05D008811 1.1e-35 153.7 123 66.7
C03p19340 Brassica napus HOM05D007048 ORTHO05D008811 1.1e-35 153.7 123 66.7
BolC3t14320H Brassica oleracea HOM05D007048 ORTHO05D008811 1.1e-35 153.7 123 66.7
AL8G25120 Arabidopsis lyrata HOM05D007048 ORTHO05D008811 1.8e-35 152.9 133 64.7
Aqoxy3G01543 Aquilegia oxysepala HOM05D007048 ORTHO05D008811 8.9e-35 150.6 117 66.7
AT5G50930 Arabidopsis thaliana HOM05D007048 ORTHO05D008811 8.9e-35 150.6 133 64.7
Carub.0008s1094 Capsella rubella HOM05D007048 ORTHO05D008811 8.9e-35 150.6 134 63.4
Thhalv10014960m.g Eutrema salsugineum HOM05D007048 ORTHO05D008811 1.2e-34 150.2 134 61.9
EL10Ac5g11295 Beta vulgaris HOM05D007048 ORTHO05D008811 1.5e-34 149.8 117 65.8
CARHR257290 Cardamine hirsuta HOM05D007048 ORTHO05D008811 2.6e-34 149.1 136 61.0
unitig_747.g21321 Utricularia gibba HOM05D007048 ORTHO05D008811 4.4e-34 148.3 149 55.7
Ah.02g114610 Amaranthus hybridus HOM05D007048 ORTHO05D008811 1.3e-33 146.7 123 61.8
PSO384G0987 Papaver somniferum HOM05D007048 ORTHO05D008811 1.3e-33 146.7 132 61.4
PSO339G2722 Papaver somniferum HOM05D007048 ORTHO05D008811 1.7e-33 146.4 132 60.6
SGA_v2.0_scaffold40G15679 Striga asiatica HOM05D007048 ORTHO05D008811 4.9e-33 144.8 157 54.1
MBI07_g41901_MAGBIO Magnolia biondii HOM05D007048 ORTHO05D008811 1.1e-32 143.7 122 61.5
PGR031G2395 Punica granatum HOM05D007048 ORTHO05D008811 1.1e-32 143.7 138 58.0
Lsat_1_v5_gn_5_10141 Lactuca sativa HOM05D007048 ORTHO05D008811 1.9e-32 142.9 123 61.0
Glyma.04G201000 Glycine max HOM05D007048 ORTHO05D008811 4.1e-32 141.7 122 61.5
HanXRQChr10g0316061 Helianthus annuus HOM05D007048 ORTHO05D008811 4.1e-32 141.7 132 57.6
Lalb_Chr08g0237541 Lupinus albus HOM05D007048 ORTHO05D008811 5.4e-32 141.4 132 59.1
Aa31LG3G7430 Aethionema arabicum HOM05D007048 ORTHO05D008811 7.1e-32 141.0 123 61.8
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 7.1e-32 141.0 127 61.4
Medtr3g098660 Medicago truncatula HOM05D007048 ORTHO05D008811 9.2e-32 140.6 122 62.3
arahy.Tifrunner.gnm1.ann1.QNIR3T Arachis hypogaea HOM05D007048 ORTHO05D008811 1.2e-31 140.2 127 59.1
PGR031G3072 Punica granatum HOM05D007048 ORTHO05D008811 1.2e-31 140.2 138 55.8
Psat5g055240 Pisum sativum HOM05D007048 ORTHO05D008811 1.6e-31 139.8 118 64.4
PGR031G3844 Punica granatum HOM05D007048 ORTHO05D008811 2.7e-31 139.0 138 55.8
VMungo1309G1627 Vigna mungo HOM05D007048 ORTHO05D008811 2.7e-31 139.0 122 59.8
Phvul.009G161500 Phaseolus vulgaris HOM05D007048 ORTHO05D008811 4.6e-31 138.3 122 59.0
Lj1g0016164 Lotus japonicus HOM05D007048 ORTHO05D008811 1.0e-30 137.1 122 60.7
arahy.Tifrunner.gnm1.ann1.8FCI62 Arachis hypogaea HOM05D007048 ORTHO05D008811 1.3e-30 136.7 120 60.8
TPR.G21584 Trifolium pratense HOM05D007048 ORTHO05D008811 2.3e-30 136.0 126 61.1
Eucgr.K02194 Eucalyptus grandis HOM05D007048 ORTHO05D008811 5.1e-30 134.8 154 53.9
arahy.Tifrunner.gnm1.ann1.CS080T Arachis hypogaea HOM05D007048 ORTHO05D008811 1.9e-29 132.9 123 61.8
Glyma.06G164400 Glycine max HOM05D007048 ORTHO05D008811 4.3e-29 131.7 122 57.4
MD14G1147700 Malus domestica HOM05D007048 ORTHO05D008811 4.3e-29 131.7 105 68.6
Hma1.2p1_0664F.1_g198980 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 2.1e-28 129.4 95 72.6
Hma1.2p1_0664F.1_g198990 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 2.8e-28 129.0 90 74.4
arahy.Tifrunner.gnm1.ann1.DD5QTF Arachis hypogaea HOM05D007048 ORTHO05D008811 3.6e-28 128.6 123 59.3
Os04g0397700 Oryza sativa ssp. japonica HOM05D007048 ORTHO05D008811 4.7e-28 128.3 123 54.5
PGR044G0448 Punica granatum HOM05D007048 ORTHO05D008811 1.5e-26 123.2 128 54.7
CSS0012628 Camellia sinensis var. sinensis HOM05D007048 ORTHO05D008811 3.4e-26 122.1 133 56.4
FvH4_5g09450 Fragaria vesca HOM05D007048 ORTHO05D008811 1.3e-25 120.2 93 69.9
ATR0582G167 Amborella trichopoda HOM05D007048 ORTHO05D008811 3.5e-23 112.1 107 57.0
HPP92_008245 Vanilla planifolia HOM05D007048 ORTHO05D008811 3.5e-23 112.1 138 48.6
AUR62009534 Chenopodium quinoa HOM05D007048 ORTHO05D008811 4.6e-23 111.7 93 62.4
AUR62044083 Chenopodium quinoa HOM05D007048 ORTHO05D008811 7.8e-23 110.9 93 62.4
Nn3g16280 Nelumbo nucifera HOM05D007048 ORTHO05D008811 1.0e-22 110.5 87 67.8
AUR62041697 Chenopodium quinoa HOM05D007048 ORTHO05D008811 2.3e-22 109.4 93 61.3
SEGI_10153 Sequoiadendron giganteum HOM05D007048 ORTHO05D008811 1.9e-21 106.3 113 54.9
CDE05G0753 Ceratophyllum demersum HOM05D000512 ORTHO05D000861 1.4e-19 100.1 85 62.4
FAN13G1437 Fragaria x ananassa HOM05D007048 ORTHO05D008811 1.8e-19 99.8 75 72.0
BcaB01g01606 Brassica carinata HOM05D007048 ORTHO05D008811 8.9e-19 97.4 106 54.7
Nn1g04900 Nelumbo nucifera HOM05D007048 ORTHO05D008811 2.0e-18 96.3 84 63.1
AagrBONN_evm.TU.Sc2ySwM_362.2725 Anthoceros agrestis HOM05D007048 ORTHO05D008811 1.7e-17 93.2 124 45.2
Zm00001eb084850 Zea mays HOM05D007048 ORTHO05D008811 2.4e-16 89.4 76 61.8
Pp3c2_1780 Physcomitrium patens HOM05D007048 ORTHO05D008811 4.6e-15 85.1 114 45.6
BcaB05g23641 Brassica carinata HOM05D007048 ORTHO05D008811 1.7e-14 83.2 77 59.7
Mapoly0109s0028 Marchantia polymorpha HOM05D007048 ORTHO05D008811 3.6e-12 75.5 123 38.2
RcHm_v2.0_Chr5g0067941 Rosa chinensis HOM05D052544 ORTHO05D008811 9.0e-11 70.9 53 71.7
COL.COLO4_37252 Corchorus olitorius HOM05D007048 ORTHO05D008811 1.1e-08 63.9 87 47.1
ECA233G3375 Erigeron canadensis HOM05D007048 ORTHO05D008811 2.4e-08 62.8 72 48.6
Oeu009260.1 Olea europaea HOM05D007048 ORTHO05D008811 6.6e-06 54.7 48 62.5


User provided reference genes

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