Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 0.0e+00 1171.4 568 100.0
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 0.0e+00 1144.0 569 97.0
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 0.0e+00 1143.6 569 97.0
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 0.0e+00 1101.3 569 93.7
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 1.3e-302 1042.3 568 87.7
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 1.4e-299 1032.3 565 87.3
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.8e-299 1031.9 553 89.2
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 2.3e-299 1031.6 567 87.1
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 8.9e-299 1029.6 562 86.8
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.2e-298 1029.2 565 86.7
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.2e-298 1029.2 565 87.1
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 1.2e-298 1029.2 555 88.6
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.6e-298 1028.1 562 86.7
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 2.6e-298 1028.1 559 88.2
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 3.4e-298 1027.7 562 86.8
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 4.4e-298 1027.3 562 86.8
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 4.4e-298 1027.3 566 85.9
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 9.8e-298 1026.2 569 86.6
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 9.8e-298 1026.2 555 87.7
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 2.9e-297 1024.6 555 87.4
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 3.7e-297 1024.2 562 86.7
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 3.7e-297 1024.2 550 88.0
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 1.8e-296 1021.9 566 85.5
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 4.1e-296 1020.8 569 85.1
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 4.1e-296 1020.8 553 88.2
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 9.2e-296 1019.6 555 87.0
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.2e-295 1019.2 553 87.5
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 1.6e-295 1018.8 568 85.2
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 3.5e-295 1017.7 559 86.0
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 4.6e-295 1017.3 557 86.9
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 4.6e-295 1017.3 551 86.8
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 5.9e-295 1016.9 569 85.2
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 7.8e-295 1016.5 553 87.3
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.0e-294 1016.1 569 84.7
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 8.6e-294 1013.1 574 84.8
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.1e-293 1012.7 551 86.2
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 1.5e-293 1012.3 568 85.0
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 2.5e-293 1011.5 550 87.3
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 3.3e-293 1011.1 553 87.2
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 3.3e-293 1011.1 562 85.9
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 5.6e-293 1010.4 550 87.1
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 7.3e-293 1010.0 568 83.5
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 1.2e-292 1009.2 560 85.5
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 2.1e-292 1008.4 560 84.8
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 2.1e-292 1008.4 568 84.5
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 3.6e-292 1007.7 557 85.5
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 6.2e-292 1006.9 569 85.2
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 6.2e-292 1006.9 555 86.7
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 6.2e-292 1006.9 543 87.5
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 1.1e-291 1006.1 550 86.9
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 1.4e-291 1005.7 571 83.7
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 1.8e-291 1005.4 570 84.0
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 2.3e-291 1005.0 559 85.2
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 4.0e-291 1004.2 560 84.6
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 2.0e-290 1001.9 560 84.5
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 7.5e-290 1000.0 560 85.5
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 2.9e-289 998.0 560 83.9
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 4.9e-289 997.3 567 83.6
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 1.1e-288 996.1 560 83.8
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 1.4e-288 995.7 560 83.9
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 1.4e-288 995.7 560 84.1
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 7.0e-288 993.4 583 82.0
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 1.6e-287 992.3 560 84.1
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 4.6e-287 990.7 542 86.3
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 6.0e-287 990.3 549 84.9
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 1.3e-286 989.2 550 85.3
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 1.7e-286 988.8 544 85.7
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 3.0e-286 988.0 565 83.9
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 3.9e-286 987.6 560 83.2
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 5.0e-286 987.3 587 80.9
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 7.3e-285 983.4 543 85.3
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 1.4e-283 979.2 544 84.9
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 1.4e-283 979.2 571 82.5
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.4e-283 979.2 558 84.8
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 3.1e-283 978.0 571 82.3
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 5.2e-283 977.2 568 82.0
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 5.2e-283 977.2 559 83.5
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 1.5e-282 975.7 544 84.2
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 5.8e-282 973.8 561 82.5
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 2.2e-281 971.8 544 84.6
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 4.9e-281 970.7 559 83.0
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 9.2e-280 966.5 543 84.2
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 1.3e-278 962.6 555 81.1
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 3.0e-278 961.4 550 83.1
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 3.1e-275 951.4 505 89.7
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 3.1e-275 951.4 550 81.5
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 8.9e-275 949.9 543 82.1
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 4.4e-274 947.6 543 82.0
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 3.8e-273 944.5 549 81.8
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 3.8e-273 944.5 514 87.5
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 6.4e-273 943.7 549 81.8
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 2.3e-270 935.3 544 82.5
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 5.6e-269 930.6 543 82.1
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.1e-267 924.9 555 79.6
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 2.6e-266 921.8 570 79.6
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.5e-261 906.0 562 78.8
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.9e-261 905.6 549 80.0
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 4.2e-256 887.9 543 75.7
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.1e-255 885.6 540 78.1
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.7e-255 885.2 540 78.1
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.5e-253 879.4 549 76.0
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 1.3e-252 876.3 569 75.2
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 5.3e-251 870.9 494 83.2
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 5.3e-251 870.9 543 76.2
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 1.4e-248 862.8 550 74.4
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 2.1e-244 849.0 558 76.3
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 8.2e-244 847.0 548 73.9
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 1.5e-242 842.8 558 74.6
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 3.4e-242 841.6 547 74.0
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 1.4e-240 836.3 568 73.8
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 7.9e-239 830.5 455 87.7
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 5.9e-234 814.3 509 77.0
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 5.5e-232 807.7 561 70.6
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 2.2e-228 795.8 424 89.2
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 1.1e-227 793.5 423 89.6
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 1.3e-225 786.6 558 67.9
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 8.8e-222 773.9 542 68.5
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 2.7e-215 752.3 548 66.8
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 2.0e-210 736.1 536 66.4
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.9e-208 729.6 537 65.7
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.4e-206 723.4 536 66.8
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.4e-206 723.4 536 66.8
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 1.2e-202 710.3 606 62.7
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.2e-173 614.0 334 86.8
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 2.0e-173 613.2 330 88.8
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 7.1e-163 578.2 559 58.3
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 4.3e-152 542.3 292 88.4
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 1.6e-146 523.9 546 50.7
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 5.3e-134 482.3 309 76.4
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 2.7e-130 469.9 303 73.9
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 2.0e-125 453.8 347 66.9
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 9.1e-102 375.2 199 88.4
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.8e-92 343.2 504 43.7
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 3.7e-71 273.5 197 64.5
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.5e-67 261.5 336 43.8
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 2.9e-63 247.3 139 84.9
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 2.4e-62 244.2 133 89.5
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 6.4e-55 219.5 129 80.6
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 3.2e-54 217.2 137 75.9
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 1.1e-51 208.8 127 78.0
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 1.1e-51 208.8 127 78.0
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 3.3e-51 207.2 124 79.8
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 1.1e-49 202.2 109 79.8
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 8.9e-49 199.1 120 77.5
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 8.9e-49 199.1 120 77.5
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 6.4e-47 193.0 119 76.5
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 6.4e-47 193.0 119 76.5
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 8.3e-47 192.6 111 79.3
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.7e-44 184.9 119 73.1
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 8.9e-41 172.6 95 80.0
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 3.0e-36 157.5 76 92.1
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 4.4e-32 143.7 79 86.1
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 4.8e-26 123.6 118 51.7
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 5.8e-24 116.7 211 38.9
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 9.9e-24 115.9 86 65.1
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 3.8e-23 114.0 60 85.0
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 2.4e-22 111.3 123 48.0
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 1.4e-17 95.5 63 73.0


User provided reference genes

Program Settings