Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 6.9e-248 860.9 718 100.0
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 1.9e-197 693.3 711 88.7
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 1.7e-185 653.7 706 84.8
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 5.6e-173 612.1 719 84.0
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 7.1e-136 488.8 673 80.8
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 3.9e-134 483.0 624 83.3
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 5.3e-131 472.6 703 77.5
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 9.0e-131 471.9 661 73.5
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 1.2e-130 471.5 688 76.3
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 1.5e-130 471.1 627 83.1
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 7.6e-130 468.8 702 77.5
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 1.3e-129 468.0 702 75.5
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 1.4e-128 464.5 702 77.4
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 5.7e-125 452.6 716 73.6
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 4.8e-124 449.5 620 81.5
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 4.8e-124 449.5 709 66.6
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 1.2e-122 444.9 695 72.1
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 1.2e-122 444.9 717 72.8
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 1.0e-121 441.8 677 75.8
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 3.8e-121 439.9 702 73.9
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 6.5e-121 439.1 704 73.3
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.1e-120 438.3 676 76.9
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 3.2e-120 436.8 716 71.9
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 1.0e-118 431.8 732 71.0
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 1.8e-118 431.0 717 71.5
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 2.3e-118 430.6 674 74.5
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 3.0e-118 430.3 729 70.6
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 8.7e-118 428.7 731 71.3
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 4.3e-117 426.4 705 73.0
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 9.7e-117 425.2 681 73.6
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 2.0e-114 417.5 702 71.9
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 5.9e-114 416.0 559 85.3
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 2.9e-113 413.7 713 70.1
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 7.2e-112 409.1 713 70.0
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 1.6e-111 407.9 673 73.0
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 2.7e-111 407.1 717 70.0
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 1.8e-110 404.4 705 72.2
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 2.3e-110 404.1 654 74.5
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 6.7e-110 402.5 708 70.2
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 1.5e-109 401.4 623 79.0
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 2.0e-109 401.0 711 71.2
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 3.7e-108 396.7 674 70.2
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 1.4e-107 394.8 661 74.3
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 1.2e-106 391.7 691 67.7
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 1.5e-106 391.3 663 73.3
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 2.6e-106 390.6 665 72.5
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 1.0e-105 388.7 619 77.2
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 1.3e-105 388.3 694 70.2
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 5.0e-105 386.3 619 76.9
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 4.2e-104 383.3 641 75.5
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 9.4e-104 382.1 614 77.2
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 1.6e-103 381.3 671 71.8
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 6.1e-103 379.4 674 72.4
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 1.0e-102 378.6 623 75.9
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 1.0e-102 378.6 649 74.3
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.8e-102 377.9 622 75.9
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 2.3e-102 377.5 650 71.8
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 3.0e-102 377.1 622 75.2
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 8.8e-102 375.6 629 74.9
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 3.3e-101 373.6 711 69.1
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 1.7e-100 371.3 615 70.9
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 2.8e-100 370.5 617 70.8
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 2.8e-100 370.5 616 70.9
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 4.8e-100 369.8 612 70.4
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 6.3e-100 369.4 618 74.9
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 8.2e-100 369.0 669 71.6
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 1.1e-99 368.6 612 70.9
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 1.8e-99 367.9 617 70.5
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 2.4e-99 367.5 662 72.2
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 5.3e-99 366.3 616 74.5
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 2.0e-98 364.4 448 72.3
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 9.4e-96 355.5 693 68.7
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 1.2e-95 355.1 409 74.1
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 1.6e-95 354.8 665 65.9
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 2.7e-95 354.0 575 77.0
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 4.7e-95 353.2 662 72.4
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 6.1e-95 352.8 656 68.9
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 1.0e-94 352.1 619 74.0
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 1.8e-94 351.3 580 76.0
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 1.2e-93 348.6 659 70.7
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 1.5e-93 348.2 680 68.8
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 5.7e-93 346.3 652 70.7
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 3.5e-90 337.0 358 50.8
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 2.2e-89 334.3 720 61.7
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 1.1e-88 332.0 672 68.3
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 9.4e-88 328.9 670 62.8
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 6.1e-87 326.2 659 54.8
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 1.8e-86 324.7 578 70.4
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 6.8e-86 322.8 317 52.1
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 5.7e-85 319.7 503 86.1
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 2.4e-83 314.3 688 66.4
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 7.0e-83 312.8 664 67.3
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 2.3e-81 307.8 332 49.4
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 8.9e-78 295.8 272 55.9
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 3.4e-77 293.9 398 69.8
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 2.8e-76 290.8 214 63.6
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 4.1e-59 233.8 489 80.0
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 6.6e-57 226.5 338 64.2
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 1.2e-55 222.2 510 75.1
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 4.4e-53 213.8 504 77.6
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 2.0e-45 188.3 518 67.8
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 3.4e-37 161.0 119 62.2
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 4.2e-35 154.1 392 90.1
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 1.5e-29 135.6 177 43.5
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 2.0e-29 135.2 201 34.8
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 2.2e-28 131.7 82 81.7
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 1.4e-27 129.0 184 34.8
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 4.2e-27 127.5 90 70.0
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 9.3e-27 126.3 77 83.1
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 3.1e-22 111.3 82 68.3
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 6.9e-22 110.2 194 32.0
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 3.8e-20 104.4 68 76.5
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 6.7e-17 93.6 76 63.2
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 9.0e-14 83.2 50 84.0
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 2.5e-11 75.1 56 67.9
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 3.2e-11 74.7 112 44.6
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 4.1e-06 57.8 139 23.0
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 4.1e-06 57.8 192 26.0


User provided reference genes

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