Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G022070 Citrullus lanatus HOM05D010941 ORTHO05D000412 5.6e-72 274.2 146 100.0
CsaV3_6G014900 Cucumis sativus L. HOM05D010941 ORTHO05D000412 5.4e-59 231.1 145 82.8
Sed0003716 Sechium edule HOM05D010941 ORTHO05D000412 2.4e-54 215.7 146 78.1
MELO3C035176.2 Cucumis melo HOM05D010941 ORTHO05D000412 1.9e-51 206.1 125 84.8
Duzib170G0821 Durio zibethinus HOM05D000581 ORTHO05D000412 1.2e-29 133.7 148 54.1
QL01p013207 Quercus lobata HOM05D000581 ORTHO05D000412 2.0e-29 132.9 138 55.8
Gorai.009G087000 Gossypium raimondii HOM05D000581 ORTHO05D000412 1.3e-28 130.2 148 50.7
CiPaw.13G138400 Carya illinoinensis HOM05D000581 ORTHO05D000412 1.1e-27 127.1 140 50.7
Glyma.13G317900 Glycine max HOM05D000581 ORTHO05D000412 3.0e-25 119.0 147 46.3
PGR102G2836 Punica granatum HOM05D000581 ORTHO05D000412 1.4e-22 110.2 140 49.3
Cfa010058 Carpinus fangiana HOM05D000581 ORTHO05D000412 2.4e-22 109.4 110 56.4
Medtr2g085155 Medicago truncatula HOM05D010941 ORTHO05D000412 1.2e-21 107.1 168 37.5
Gohir.D05G085200 Gossypium hirsutum HOM05D010941 ORTHO05D000412 7.7e-21 104.4 106 51.9
Phvul.005G125700 Phaseolus vulgaris HOM05D000581 ORTHO05D000412 7.7e-21 104.4 147 43.5
Medtr2g086010 Medicago truncatula HOM05D010941 ORTHO05D000412 2.2e-20 102.8 144 37.5
VMungo1080G1526 Vigna mungo HOM05D000581 ORTHO05D000412 5.0e-20 101.7 148 41.9
Gohir.A05G082300 Gossypium hirsutum HOM05D010941 ORTHO05D000412 8.5e-20 100.9 106 50.0
Prupe.6G124800 Prunus persica HOM05D000581 ORTHO05D000412 3.2e-19 99.0 110 55.5
Sabra09G0112800 Salix brachista HOM05D000581 ORTHO05D000412 4.2e-19 98.6 115 53.0
Lalb_Chr24g0395251 Lupinus albus HOM05D000581 ORTHO05D000412 2.3e-17 92.8 147 38.8
TPR.G23789 Trifolium pratense HOM05D010941 ORTHO05D000412 2.3e-17 92.8 122 40.2
GSVIVG01036181001 Vitis vinifera HOM05D010941 ORTHO05D000412 2.3e-17 92.8 109 50.5
Dinv29449 Davidia involucrata HOM05D000581 ORTHO05D000412 3.0e-17 92.4 127 42.5
Thecc.09G287400 Theobroma cacao HOM05D010941 ORTHO05D000412 3.9e-17 92.0 145 40.0
Ciclev10029511m.g Citrus clementina HOM05D000581 ORTHO05D000412 2.8e-15 85.9 141 34.8
Duzib093G1459 Durio zibethinus HOM05D000581 ORTHO05D000412 6.3e-15 84.7 149 35.6
Lj3g0023809 Lotus japonicus HOM05D010941 ORTHO05D000412 8.2e-15 84.3 145 35.9
MBI17_g16875_MAGBIO Magnolia biondii HOM05D000581 ORTHO05D000412 1.8e-14 83.2 148 33.1
Thecc.05G085200 Theobroma cacao HOM05D000581 ORTHO05D000412 3.1e-14 82.4 149 33.6
Dinv31661 Davidia involucrata HOM05D000581 ORTHO05D000412 4.1e-14 82.0 159 33.3
Duzib168G0145 Durio zibethinus HOM05D010941 ORTHO05D000412 4.1e-14 82.0 98 46.9
Gohir.D09G136500 Gossypium hirsutum HOM05D000581 ORTHO05D000412 9.1e-14 80.9 149 34.2
Gorai.006G156600 Gossypium raimondii HOM05D000581 ORTHO05D000412 1.2e-13 80.5 149 34.2
CDE08G0017 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 2.0e-13 79.7 147 34.0
Duzib128G0312 Durio zibethinus HOM05D000581 ORTHO05D000412 3.5e-13 79.0 149 31.5
CDE06G0806 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 1.7e-12 76.6 147 33.3
AagrBONN_evm.TU.Sc2ySwM_117.2310 Anthoceros agrestis HOM05D000581 ORTHO05D000412 2.2e-12 76.3 142 31.0
Manes.09G059100 Manihot esculenta HOM05D000581 ORTHO05D000412 5.0e-12 75.1 148 32.4
Cpa.g.sc32.127 Carica papaya HOM05D000581 ORTHO05D000412 8.5e-12 74.3 85 52.9
Manes.08G023500 Manihot esculenta HOM05D000581 ORTHO05D000412 1.5e-11 73.6 149 34.2
FAN05G4728 Fragaria x ananassa HOM05D000581 ORTHO05D000412 2.5e-11 72.8 141 31.9
Aa31LG8G8190 Aethionema arabicum HOM05D000581 ORTHO05D000412 4.2e-11 72.0 141 31.2
FAN05G4004 Fragaria x ananassa HOM05D000581 ORTHO05D000412 7.2e-11 71.2 141 31.2
Actinidia05735 Actinidia chinensis HOM05D000581 ORTHO05D000412 9.4e-11 70.9 136 28.7
FvH4_6g04970 Fragaria vesca HOM05D000581 ORTHO05D000412 9.4e-11 70.9 141 31.2
FAN02G3497 Fragaria x ananassa HOM05D000581 ORTHO05D000412 9.4e-11 70.9 141 31.2
CSS0026132 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 1.2e-10 70.5 138 29.0
Solyc12g036230.3 Solanum lycopersicum HOM05D010941 ORTHO05D000412 1.6e-10 70.1 147 30.6
VMungo0720G0007 Vigna mungo HOM05D000581 ORTHO05D000412 1.6e-10 70.1 136 30.1
Lj9A678T39 Lonicera japonica HOM05D000581 ORTHO05D000412 2.7e-10 69.3 130 29.2
Sopen12g016360 Solanum pennellii HOM05D010941 ORTHO05D000412 2.7e-10 69.3 147 30.6
CSS0034339 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 3.6e-10 68.9 135 27.4
Thhalv10021689m.g Eutrema salsugineum HOM05D000581 ORTHO05D000412 3.6e-10 68.9 141 29.8
GSVIVG01022018001 Vitis vinifera HOM05D000581 ORTHO05D000412 3.6e-10 68.9 136 28.7
BcaB04g20584 Brassica carinata HOM05D000581 ORTHO05D000412 4.7e-10 68.6 141 29.1
FAN09G3412 Fragaria x ananassa HOM05D000581 ORTHO05D000412 4.7e-10 68.6 141 30.5
Glyma.11G187300 Glycine max HOM05D000581 ORTHO05D000412 6.1e-10 68.2 139 28.1
TAR365G0048 Trochodendron aralioides HOM05D000581 ORTHO05D000412 6.1e-10 68.2 141 28.4
Sp3g19550 Schrenkiella parvula HOM05D000581 ORTHO05D000412 8.0e-10 67.8 141 29.1
AL3G35620 Arabidopsis lyrata HOM05D000581 ORTHO05D000412 1.0e-09 67.4 141 29.8
AT3G21510 Arabidopsis thaliana HOM05D000581 ORTHO05D000412 1.0e-09 67.4 132 30.3
Carub.0003s2155 Capsella rubella HOM05D000581 ORTHO05D000412 1.0e-09 67.4 141 29.8
CARHR097440 Cardamine hirsuta HOM05D000581 ORTHO05D000412 1.0e-09 67.4 141 29.8
Cc02_g32420 Coffea canephora HOM05D000581 ORTHO05D000412 1.0e-09 67.4 137 27.7
TAR627G1138 Trochodendron aralioides HOM05D000581 ORTHO05D000412 1.0e-09 67.4 149 30.9
RcHm_v2.0_Chr3g0472651 Rosa chinensis HOM05D018852 ORTHO05D000412 1.4e-09 67.0 147 30.6
BcaB04g19172 Brassica carinata HOM05D000581 ORTHO05D000412 1.8e-09 66.6 141 27.7
FvH4_6g18230 Fragaria vesca HOM05D018852 ORTHO05D022587 1.8e-09 66.6 147 32.0
PGR004G2822 Punica granatum HOM05D000581 ORTHO05D000412 1.8e-09 66.6 132 28.0
Zm00001eb096040 Zea mays HOM05D000581 ORTHO05D000412 3.0e-09 65.9 141 29.8
CSS0047346 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 4.0e-09 65.5 136 26.5
Ciclev10002761m.g Citrus clementina HOM05D000581 ORTHO05D000412 4.0e-09 65.5 140 29.3
BcaC09g49088 Brassica carinata HOM05D000581 ORTHO05D000412 5.2e-09 65.1 141 28.4
A01p33390 Brassica napus HOM05D000581 ORTHO05D000412 6.7e-09 64.7 141 28.4
C01p42660 Brassica napus HOM05D000581 ORTHO05D000412 6.7e-09 64.7 132 28.8
BolC1t04222H Brassica oleracea HOM05D000581 ORTHO05D000412 6.7e-09 64.7 132 28.8
BraA01t03461Z Brassica rapa HOM05D000581 ORTHO05D000412 6.7e-09 64.7 141 28.4
CiPaw.01G155900 Carya illinoinensis HOM05D000581 ORTHO05D000412 6.7e-09 64.7 141 26.2
Ca_10080_v3 Cicer arietinum L. HOM05D000581 ORTHO05D000412 6.7e-09 64.7 136 27.2
Gohir.A09G232600 Gossypium hirsutum HOM05D000581 ORTHO05D000412 6.7e-09 64.7 141 30.5
TWI73G0342 Tripterygium wilfordii HOM05D000581 ORTHO05D000412 6.7e-09 64.7 141 28.4
Ca_13452_v3 Cicer arietinum L. HOM05D000581 ORTHO05D000412 8.8e-09 64.3 130 27.7
Os09g0567400 Oryza sativa ssp. japonica HOM05D000581 ORTHO05D000412 8.8e-09 64.3 150 28.0
Psat6g148480 Pisum sativum HOM05D000581 ORTHO05D000412 8.8e-09 64.3 136 27.2
Duzib151G0330 Durio zibethinus HOM05D000581 ORTHO05D000412 1.2e-08 63.9 141 27.0
Duzib212G0159 Durio zibethinus HOM05D000581 ORTHO05D000412 1.2e-08 63.9 141 27.0
Eucgr.B01218 Eucalyptus grandis HOM05D000581 ORTHO05D000412 1.2e-08 63.9 141 27.0
Gohir.D10G164000 Gossypium hirsutum HOM05D000581 ORTHO05D000412 1.2e-08 63.9 141 27.7
QL01p013198 Quercus lobata HOM05D000581 ORTHO05D000412 1.2e-08 63.9 108 28.7
Sc16g0008270 Simmondsia chinensis HOM05D000581 ORTHO05D000412 1.2e-08 63.9 136 29.4
COL.COLO4_13557 Corchorus olitorius HOM05D000581 ORTHO05D000412 1.5e-08 63.5 136 26.5
Dinv40236 Davidia involucrata HOM05D000581 ORTHO05D000412 1.5e-08 63.5 136 26.5
Duzib177G0416 Durio zibethinus HOM05D000581 ORTHO05D000412 1.5e-08 63.5 136 26.5
Gohir.A10G104700 Gossypium hirsutum HOM05D000581 ORTHO05D000412 1.5e-08 63.5 141 27.7
Gohir.D09G233700 Gossypium hirsutum HOM05D000581 ORTHO05D000412 1.5e-08 63.5 141 29.8
Medtr1g082290 Medicago truncatula HOM05D000581 ORTHO05D000412 1.5e-08 63.5 129 27.1
RcHm_v2.0_Chr3g0453481 Rosa chinensis HOM05D000581 ORTHO05D000412 1.5e-08 63.5 139 26.6
Solyc01g098400.3 Solanum lycopersicum HOM05D000581 ORTHO05D000412 1.5e-08 63.5 132 27.3
Sopen01g041970 Solanum pennellii HOM05D000581 ORTHO05D000412 1.5e-08 63.5 132 27.3
GSVIVG01017840001 Vitis vinifera HOM05D000581 ORTHO05D000412 2.0e-08 63.2 130 26.9
Actinidia40207 Actinidia chinensis HOM05D000581 ORTHO05D000412 2.6e-08 62.8 141 26.2
Dinv38343 Davidia involucrata HOM05D000581 ORTHO05D000412 2.6e-08 62.8 130 26.2
Hma1.2p1_0643F.1_g194570 Hydrangea macrophylla HOM05D000581 ORTHO05D000412 2.6e-08 62.8 130 26.9
PGSC0003DMG400028593 Solanum tuberosum HOM05D000581 ORTHO05D000412 2.6e-08 62.8 132 27.3
Lj6g0021208 Lotus japonicus HOM05D000373 ORTHO05D001146 3.3e-08 62.4 130 26.2
Thecc.04G273700 Theobroma cacao HOM05D000581 ORTHO05D000412 3.3e-08 62.4 141 27.0
MSTRG.24770 Avicennia marina HOM05D000581 ORTHO05D000412 4.4e-08 62.0 141 25.5
Psat1g186240 Pisum sativum HOM05D000581 ORTHO05D000412 4.4e-08 62.0 130 27.7
TAR623G0761 Trochodendron aralioides HOM05D000581 ORTHO05D000412 4.4e-08 62.0 101 33.7
GSVIVG01034756001 Vitis vinifera HOM05D000581 ORTHO05D000412 4.4e-08 62.0 132 30.3
Gohir.A09G138100 Gossypium hirsutum HOM05D000581 ORTHO05D000412 5.7e-08 61.6 110 34.5
Manes.15G019500 Manihot esculenta HOM05D000581 ORTHO05D000412 5.7e-08 61.6 130 25.4
Phvul.006G159300 Phaseolus vulgaris HOM05D000581 ORTHO05D000412 5.7e-08 61.6 130 27.7
Sopen06g035800 Solanum pennellii HOM05D000581 ORTHO05D000412 5.7e-08 61.6 136 25.0
PGSC0003DMG401020117 Solanum tuberosum HOM05D000581 ORTHO05D000412 5.7e-08 61.6 136 25.0
TAR636G3222 Trochodendron aralioides HOM05D000581 ORTHO05D000412 5.7e-08 61.6 132 26.5
Glyma.15G099800 Glycine max HOM05D000581 ORTHO05D000412 7.5e-08 61.2 130 27.7
Medtr2g020770 Medicago truncatula HOM05D000581 ORTHO05D000412 7.5e-08 61.2 130 26.2
VMungo0540G1727 Vigna mungo HOM05D000581 ORTHO05D000412 7.5e-08 61.2 130 27.7
Actinidia23447 Actinidia chinensis HOM05D000581 ORTHO05D000412 9.7e-08 60.8 141 25.5
MSTRG.3966 Avicennia marina HOM05D000581 ORTHO05D000412 1.3e-07 60.5 130 26.2
Duzib170G0963 Durio zibethinus HOM05D000581 ORTHO05D000412 1.3e-07 60.5 140 27.1
FAN14G3696 Fragaria x ananassa HOM05D000581 ORTHO05D000412 1.3e-07 60.5 165 27.3
Potri.004G185900 Populus trichocarpa HOM05D000581 ORTHO05D000412 1.3e-07 60.5 136 30.1
TPR.G18038 Trifolium pratense HOM05D000581 ORTHO05D000412 1.3e-07 60.5 129 27.9
Nitab4.5_0003058g0010 Nicotiana tabacum HOM05D000581 ORTHO05D000412 1.7e-07 60.1 136 25.7
Oeu044805.1 Olea europaea HOM05D000581 ORTHO05D000412 1.7e-07 60.1 141 23.4
Os08g0557700 Oryza sativa ssp. japonica HOM05D000581 ORTHO05D000412 1.7e-07 60.1 140 28.6
TWI12G0413 Tripterygium wilfordii HOM05D000581 ORTHO05D000412 1.7e-07 60.1 136 24.3
PGR031G1903 Punica granatum HOM05D000581 ORTHO05D000412 2.2e-07 59.7 141 23.4
QL06p006489 Quercus lobata HOM05D000581 ORTHO05D000412 2.8e-07 59.3 141 25.5
CSS0031946 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 3.7e-07 58.9 141 26.2
CSS0039077 Camellia sinensis var. sinensis HOM05D010941 ORTHO05D000412 3.7e-07 58.9 84 45.2
FAN17G2675 Fragaria x ananassa HOM05D000581 ORTHO05D000412 3.7e-07 58.9 130 26.9
SEGI_29601 Sequoiadendron giganteum HOM05D000581 ORTHO05D000412 3.7e-07 58.9 126 28.6
CiPaw.07G012800 Carya illinoinensis HOM05D000581 ORTHO05D000412 4.8e-07 58.5 136 24.3
Migut.G00235 Erythranthe guttata HOM05D000581 ORTHO05D000412 4.8e-07 58.5 141 24.8
FvH4_4g16820 Fragaria vesca HOM05D000581 ORTHO05D000412 4.8e-07 58.5 130 26.9
FAN12G2071 Fragaria x ananassa HOM05D000581 ORTHO05D000412 4.8e-07 58.5 130 26.9
FAN12G3718 Fragaria x ananassa HOM05D000581 ORTHO05D000412 4.8e-07 58.5 130 26.9
Cfa016574 Carpinus fangiana HOM05D000581 ORTHO05D000412 6.3e-07 58.2 96 37.5
Cpa.g.sc728.2 Carica papaya HOM05D000581 ORTHO05D000412 8.2e-07 57.8 140 25.0
COL.COLO4_19933 Corchorus olitorius HOM05D010941 ORTHO05D000412 8.2e-07 57.8 109 35.8
Haze_23422 Corylus avellana HOM05D010941 ORTHO05D000412 8.2e-07 57.8 73 52.1
FAN07G2395 Fragaria x ananassa HOM05D000581 ORTHO05D000412 8.2e-07 57.8 130 26.2
Potri.010G027100 Populus trichocarpa HOM05D000581 ORTHO05D000412 8.2e-07 57.8 130 24.6
HPP92_003275 Vanilla planifolia HOM05D000581 ORTHO05D000412 8.2e-07 57.8 131 28.2
Lj2A30G108 Lonicera japonica HOM05D000581 ORTHO05D000412 5.3e-06 55.1 142 28.9
Cfa010057 Carpinus fangiana HOM05D000581 ORTHO05D000412 7.0e-06 54.7 109 29.4
Glyma.13G212800 Glycine max HOM05D000581 ORTHO05D000412 9.1e-06 54.3 119 26.9
Thecc.01G287000 Theobroma cacao HOM05D000581 ORTHO05D000412 9.1e-06 54.3 131 24.4


User provided reference genes

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