Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 1.9e-46 188.7 90 100.0
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 6.1e-45 183.7 90 96.7
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 8.0e-45 183.3 90 96.7
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 1.5e-43 179.1 87 96.6
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 2.0e-43 178.7 87 95.4
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 2.6e-43 178.3 87 95.4
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 2.6e-43 178.3 87 95.4
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 2.6e-43 178.3 87 95.4
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 3.4e-43 177.9 87 94.3
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 4.4e-43 177.6 87 95.4
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 4.4e-43 177.6 87 95.4
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 4.4e-43 177.6 87 95.4
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 4.4e-43 177.6 87 95.4
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 4.4e-43 177.6 87 95.4
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 4.4e-43 177.6 87 95.4
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 5.8e-43 177.2 87 95.4
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 5.8e-43 177.2 87 95.4
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 7.5e-43 176.8 87 94.3
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 7.5e-43 176.8 87 95.4
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 7.5e-43 176.8 87 95.4
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 9.8e-43 176.4 87 95.4
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 9.8e-43 176.4 87 95.4
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.3e-42 176.0 87 95.4
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 1.7e-42 175.6 90 92.2
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 1.7e-42 175.6 86 95.3
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 1.7e-42 175.6 86 95.3
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 1.7e-42 175.6 86 95.3
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 1.7e-42 175.6 86 95.3
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 2.2e-42 175.3 87 94.3
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 2.2e-42 175.3 87 95.4
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 2.2e-42 175.3 87 94.3
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 2.2e-42 175.3 87 94.3
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 3.7e-42 174.5 86 94.2
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 3.7e-42 174.5 87 94.3
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.7e-42 174.5 87 94.3
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.7e-42 174.5 87 94.3
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 3.7e-42 174.5 87 94.3
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 4.9e-42 174.1 87 93.1
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 4.9e-42 174.1 86 94.2
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 4.9e-42 174.1 87 94.3
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.4e-42 173.7 85 95.3
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.4e-42 173.7 85 95.3
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 6.4e-42 173.7 87 94.3
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 6.4e-42 173.7 87 94.3
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 6.4e-42 173.7 86 94.2
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 8.3e-42 173.3 87 93.1
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 8.3e-42 173.3 87 93.1
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 8.3e-42 173.3 87 93.1
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.1e-41 172.9 87 93.1
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 1.1e-41 172.9 87 93.1
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 1.4e-41 172.6 86 94.2
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 1.9e-41 172.2 87 92.0
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 1.9e-41 172.2 87 90.8
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 1.9e-41 172.2 83 97.6
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 1.9e-41 172.2 83 97.6
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 2.4e-41 171.8 81 98.8
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 4.1e-41 171.0 83 95.2
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 4.1e-41 171.0 83 96.4
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 4.1e-41 171.0 83 96.4
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 5.4e-41 170.6 87 90.8
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 5.4e-41 170.6 87 90.8
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 7.0e-41 170.2 90 90.0
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 9.2e-41 169.9 86 94.2
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 9.2e-41 169.9 82 96.3
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 9.2e-41 169.9 88 92.0
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 1.2e-40 169.5 82 95.1
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 1.2e-40 169.5 83 95.2
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 1.6e-40 169.1 87 89.7
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 1.6e-40 169.1 89 91.0
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 2.0e-40 168.7 87 89.7
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 2.0e-40 168.7 97 85.6
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 2.0e-40 168.7 81 96.3
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 2.0e-40 168.7 81 96.3
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 2.0e-40 168.7 81 96.3
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 2.0e-40 168.7 81 96.3
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 2.0e-40 168.7 81 96.3
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 2.0e-40 168.7 87 89.7
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 2.7e-40 168.3 82 95.1
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 2.7e-40 168.3 87 92.0
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 2.7e-40 168.3 82 95.1
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 3.5e-40 167.9 82 95.1
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 3.5e-40 167.9 85 92.9
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 4.6e-40 167.5 87 92.0
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 4.6e-40 167.5 83 94.0
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 6.0e-40 167.2 90 86.7
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 6.0e-40 167.2 89 89.9
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 7.8e-40 166.8 87 89.7
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 7.8e-40 166.8 81 96.3
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 7.8e-40 166.8 82 95.1
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 7.8e-40 166.8 91 87.9
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 1.0e-39 166.4 87 88.5
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.0e-39 166.4 79 97.5
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 1.0e-39 166.4 85 91.8
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 1.3e-39 166.0 82 95.1
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 1.3e-39 166.0 82 95.1
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 1.7e-39 165.6 87 90.8
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 1.7e-39 165.6 87 87.4
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 2.3e-39 165.2 81 95.1
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 2.3e-39 165.2 89 88.8
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 2.3e-39 165.2 82 93.9
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 3.0e-39 164.9 87 90.8
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 3.0e-39 164.9 87 87.4
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 3.0e-39 164.9 79 94.9
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 3.0e-39 164.9 87 88.5
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 3.9e-39 164.5 90 88.9
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 3.9e-39 164.5 82 92.7
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 3.9e-39 164.5 83 91.6
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 3.9e-39 164.5 82 92.7
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 5.0e-39 164.1 82 93.9
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 5.0e-39 164.1 84 90.5
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 5.0e-39 164.1 79 94.9
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 6.6e-39 163.7 87 87.4
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 6.6e-39 163.7 85 90.6
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 8.6e-39 163.3 82 93.9
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 8.6e-39 163.3 89 87.6
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.9e-38 162.2 87 89.7
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 1.9e-38 162.2 78 93.6
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 2.5e-38 161.8 87 86.2
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 4.3e-38 161.0 83 89.2
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 7.3e-38 160.2 90 87.8
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 9.5e-38 159.8 99 80.8
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 9.5e-38 159.8 75 97.3
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 1.2e-37 159.5 82 87.8
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 1.6e-37 159.1 87 85.1
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 2.8e-37 158.3 82 86.6
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 4.7e-37 157.5 78 91.0
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 4.7e-37 157.5 78 93.6
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 8.0e-37 156.8 78 89.7
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 8.0e-37 156.8 78 89.7
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 8.0e-37 156.8 76 94.7
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.1e-36 156.4 83 84.3
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.8e-36 155.6 78 89.7
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 2.3e-36 155.2 76 90.8
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 2.3e-36 155.2 78 89.7
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 2.3e-36 155.2 86 82.6
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 4.0e-36 154.5 75 94.7
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 6.8e-36 153.7 83 83.1
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 8.9e-36 153.3 77 92.2
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 1.5e-35 152.5 83 85.5
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 1.5e-35 152.5 83 85.5
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 5.8e-35 150.6 74 90.5
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 9.8e-35 149.8 83 88.0
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 1.3e-34 149.4 82 82.9
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 2.2e-34 148.7 78 87.2
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 8.3e-34 146.7 74 87.8
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 8.3e-34 146.7 74 87.8
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 8.3e-34 146.7 74 87.8
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 8.3e-34 146.7 74 87.8
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 2.1e-32 142.1 70 88.6
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 4.6e-32 141.0 73 91.8
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 3.9e-31 137.9 75 80.0
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 5.1e-31 137.5 90 78.9
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 7.3e-30 133.7 68 85.3
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.8e-29 131.7 91 70.3
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 1.1e-28 129.8 69 79.7
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 2.0e-27 125.6 66 87.9
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 4.4e-27 124.4 61 91.8
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 1.4e-25 119.4 60 86.7
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 3.5e-24 114.8 63 82.5
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 7.3e-22 107.1 55 92.7
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 9.5e-22 106.7 78 62.8
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 3.1e-20 101.7 48 97.9
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 4.2e-17 91.3 65 69.2
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 2.1e-16 89.0 50 80.0
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 3.5e-16 88.2 44 90.9
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 4.3e-14 81.3 67 64.2
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 4.3e-14 81.3 47 85.1
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 5.6e-14 80.9 38 92.1
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 7.3e-14 80.5 89 51.7
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 9.6e-14 80.1 53 75.5
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 1.2e-13 79.7 46 78.3
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 4.7e-13 77.8 59 66.1
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 4.7e-13 77.8 37 97.3
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 6.2e-13 77.4 39 82.1
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 6.2e-13 77.4 39 82.1
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 1.3e-10 69.7 38 89.5
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 8.4e-10 67.0 38 84.2
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 3.2e-09 65.1 51 58.8
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 9.3e-09 63.5 29 89.7
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 1.3e-07 59.7 38 81.6
MBI10_g35299_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 7.3e-06 53.9 29 82.8


User provided reference genes

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