Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 1.3e-35 153.7 169 100.0
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 5.0e-24 115.2 60 96.7
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 1.1e-23 114.0 60 95.0
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 1.9e-18 96.7 60 81.7
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 1.9e-15 86.7 59 71.2
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 2.5e-15 86.3 60 70.0
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 3.3e-15 85.9 60 70.0
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 5.6e-15 85.1 60 70.0
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 9.5e-15 84.3 60 68.3
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 3.6e-14 82.4 58 67.2
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 6.2e-14 81.6 61 68.9
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 1.1e-13 80.9 58 69.0
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 1.8e-13 80.1 57 71.9
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 2.3e-13 79.7 55 65.5
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 2.3e-13 79.7 58 67.2
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 2.3e-13 79.7 58 63.8
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 3.1e-13 79.3 58 69.0
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 3.1e-13 79.3 51 76.5
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 3.1e-13 79.3 51 76.5
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 3.1e-13 79.3 55 74.5
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 3.1e-13 79.3 55 74.5
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 4.0e-13 79.0 49 77.6
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 4.0e-13 79.0 55 72.7
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 6.8e-13 78.2 46 80.4
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 1.2e-12 77.4 58 67.2
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 1.2e-12 77.4 55 70.9
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 1.5e-12 77.0 53 69.8
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 1.5e-12 77.0 53 69.8
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 1.5e-12 77.0 53 69.8
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 1.5e-12 77.0 53 69.8
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 1.5e-12 77.0 53 69.8
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.5e-12 77.0 58 67.2
CsaV3_1G012810 Cucumis sativus L. HOM05D004188 ORTHO05D004445 1.5e-12 77.0 58 65.5
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 1.5e-12 77.0 61 67.2
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 2.0e-12 76.6 60 63.3
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 2.0e-12 76.6 50 76.0
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 2.6e-12 76.3 48 75.0
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 2.6e-12 76.3 60 61.7
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 2.6e-12 76.3 55 69.1
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 2.6e-12 76.3 55 69.1
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 2.6e-12 76.3 56 67.9
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 3.4e-12 75.9 55 67.3
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 4.4e-12 75.5 55 69.1
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 4.4e-12 75.5 51 70.6
Oeu002868.1 Olea europaea HOM05D004188 ORTHO05D004445 4.4e-12 75.5 57 61.4
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 4.4e-12 75.5 56 69.6
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 5.8e-12 75.1 59 62.7
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 7.5e-12 74.7 60 65.0
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 7.5e-12 74.7 58 63.8
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 9.9e-12 74.3 54 66.7
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 9.9e-12 74.3 54 66.7
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 9.9e-12 74.3 59 62.7
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 1.3e-11 73.9 57 64.9
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.3e-11 73.9 51 72.5
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 1.3e-11 73.9 60 63.3
Actinidia24099 Actinidia chinensis HOM05D004188 ORTHO05D004445 1.7e-11 73.6 51 64.7
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 1.7e-11 73.6 60 63.3
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 1.7e-11 73.6 44 81.8
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 2.2e-11 73.2 51 72.5
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 2.2e-11 73.2 56 66.1
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 2.2e-11 73.2 60 61.7
ECA248G2476 Erigeron canadensis HOM05D004188 ORTHO05D004445 2.9e-11 72.8 58 58.6
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 3.7e-11 72.4 58 63.8
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 3.7e-11 72.4 58 62.1
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 3.7e-11 72.4 60 63.3
Carub.0005s1101 Capsella rubella HOM05D004188 ORTHO05D004445 4.9e-11 72.0 49 75.5
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 4.9e-11 72.0 61 62.3
Dinv32748 Davidia involucrata HOM05D004188 ORTHO05D004445 6.4e-11 71.6 49 65.3
Thhalv10002916m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 6.4e-11 71.6 44 75.0
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 6.4e-11 71.6 60 63.3
Cfa011320 Carpinus fangiana HOM05D004188 ORTHO05D004445 8.3e-11 71.2 59 62.7
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 1.4e-10 70.5 59 62.7
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 1.4e-10 70.5 59 62.7
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 1.9e-10 70.1 59 62.7
Solyc11g069390.1 Solanum lycopersicum HOM05D004188 ORTHO05D004445 1.9e-10 70.1 45 71.1
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 2.4e-10 69.7 55 58.2
Actinidia03061 Actinidia chinensis HOM05D004188 ORTHO05D004445 3.2e-10 69.3 49 67.3
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 3.2e-10 69.3 55 61.8
Prupe.2G214100 Prunus persica HOM05D004188 ORTHO05D004445 3.2e-10 69.3 53 58.5
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 4.1e-10 68.9 57 61.4
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 4.1e-10 68.9 60 60.0
Rhsim13G0094200 Rhododendron simsii HOM05D004188 ORTHO05D004445 4.1e-10 68.9 58 56.9
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 9.2e-10 67.8 60 56.7
Sopen11g028110 Solanum pennellii HOM05D004188 ORTHO05D004445 9.2e-10 67.8 42 73.8
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 1.2e-09 67.4 60 56.7
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 1.2e-09 67.4 54 59.3
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 1.6e-09 67.0 60 58.3
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 2.7e-09 66.2 57 54.4
Peaxi162Scf00270g00089 Petunia axillaris HOM05D004188 ORTHO05D004445 3.5e-09 65.9 47 63.8
Atru.chr3.3633 Acer truncatum HOM05D004188 ORTHO05D004445 4.6e-09 65.5 42 76.2
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 6.0e-09 65.1 58 58.6
Aa31LG4G14540 Aethionema arabicum HOM05D004188 ORTHO05D004445 7.8e-09 64.7 50 62.0
C03p12760 Brassica napus HOM05D004188 ORTHO05D004445 1.0e-08 64.3 57 61.4
Ah.01g014350 Amaranthus hybridus HOM05D004188 ORTHO05D004445 1.3e-08 63.9 58 53.4
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 1.3e-08 63.9 60 55.0
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 1.3e-08 63.9 60 55.0
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 1.7e-08 63.5 61 60.7
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 1.7e-08 63.5 61 60.7
HanXRQChr13g0403511 Helianthus annuus HOM05D004188 ORTHO05D004445 1.7e-08 63.5 43 69.8
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 1.7e-08 63.5 55 61.8
PSO384G1281 Papaver somniferum HOM05D004188 ORTHO05D004445 1.7e-08 63.5 41 70.7
BolC3t13742H Brassica oleracea HOM05D004188 ORTHO05D004445 2.3e-08 63.2 57 61.4
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 2.3e-08 63.2 59 57.6
BcaB01g04664 Brassica carinata HOM05D004188 ORTHO05D004445 3.0e-08 62.8 57 56.1
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 3.0e-08 62.8 60 56.7
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 3.9e-08 62.4 59 54.2
Nitab4.5_0012712g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 3.9e-08 62.4 48 62.5
Mapoly0127s0007 Marchantia polymorpha HOM05D004188 ORTHO05D004445 5.1e-08 62.0 56 53.6
PSO339G1636 Papaver somniferum HOM05D004188 ORTHO05D004445 5.1e-08 62.0 41 68.3
unitig_699.g19195 Utricularia gibba HOM05D004188 ORTHO05D004445 6.6e-08 61.6 45 64.4
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 6.6e-08 61.6 59 54.2
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 8.6e-08 61.2 53 58.5
A03p11070 Brassica napus HOM05D004188 ORTHO05D004445 1.1e-07 60.8 57 57.9
BraA03t10421Z Brassica rapa HOM05D004188 ORTHO05D004445 1.1e-07 60.8 57 57.9
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 1.1e-07 60.8 56 55.4
arahy.Tifrunner.gnm1.ann1.H0Z3H2 Arachis hypogaea HOM05D004188 ORTHO05D004445 1.5e-07 60.5 45 57.8
BraA10t43861Z Brassica rapa HOM05D004188 ORTHO05D004445 1.5e-07 60.5 57 59.6
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 1.5e-07 60.5 59 55.9
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 1.9e-07 60.1 57 50.9
THA.LOC104810856 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 2.5e-07 59.7 38 73.7
Ciclev10029471m.g Citrus clementina HOM05D004188 ORTHO05D004445 3.3e-07 59.3 61 57.4
Dinv31327 Davidia involucrata HOM05D001979 ORTHO05D001961 3.3e-07 59.3 45 60.0
A10p17820 Brassica napus HOM05D004188 ORTHO05D004445 4.3e-07 58.9 57 57.9
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 4.3e-07 58.9 54 51.9
CANSAT56G2191 Cannabis sativa HOM05D004188 ORTHO05D004445 5.6e-07 58.5 51 56.9
PSO063G5002 Papaver somniferum HOM05D011190 ORTHO05D004445 5.6e-07 58.5 54 59.3
PSO339G4510 Papaver somniferum HOM05D011190 ORTHO05D004445 5.6e-07 58.5 54 59.3
Sp6g22190 Schrenkiella parvula HOM05D004188 ORTHO05D004445 5.6e-07 58.5 46 60.9
BcaB08g36360 Brassica carinata HOM05D004188 ORTHO05D004445 7.3e-07 58.2 57 57.9
Lj2g0024305 Lotus japonicus HOM05D004188 ORTHO05D004445 9.5e-07 57.8 51 49.0
DCAR_006440 Daucus carota HOM05D004188 ORTHO05D004445 1.2e-06 57.4 53 50.9
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 1.2e-06 57.4 54 55.6
Psat5g278280 Pisum sativum HOM05D004188 ORTHO05D004445 1.2e-06 57.4 55 49.1
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 1.2e-06 57.4 45 57.8
AL8G37220 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 1.6e-06 57.0 57 52.6
Thhalv10015987m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 2.1e-06 56.6 59 57.6
Os03g0852400 Oryza sativa ssp. japonica HOM05D004188 ORTHO05D004445 2.1e-06 56.6 50 54.0
Phvul.005G135700 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 2.1e-06 56.6 54 53.7
C09p53350 Brassica napus HOM05D004188 ORTHO05D004445 2.8e-06 56.2 55 56.4
BcaNung07071 Brassica carinata HOM05D011190 ORTHO05D013686 4.7e-06 55.5 60 50.0
MELO3C012432.2 Cucumis melo HOM05D004188 ORTHO05D004445 4.7e-06 55.5 50 58.0
Nitab4.5_0007218g0010 Nicotiana tabacum HOM05D004188 ORTHO05D004445 4.7e-06 55.5 33 72.7
TWI79G1650 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 4.7e-06 55.5 40 67.5
Hma1.2p1_0058F.1_g032570 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 6.2e-06 55.1 35 71.4
Aqoxy1G01243 Aquilegia oxysepala HOM05D004188 ORTHO05D004445 8.1e-06 54.7 57 49.1
C04p22940 Brassica napus HOM05D011190 ORTHO05D013686 8.1e-06 54.7 58 46.6
BolC4t23788H Brassica oleracea HOM05D011190 ORTHO05D013686 8.1e-06 54.7 58 46.6
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 8.1e-06 54.7 48 54.2


User provided reference genes

Program Settings