Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 6.4e-35 150.2 77 100.0
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 8.2e-22 106.7 75 77.3
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.1e-21 106.3 75 74.7
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 1.8e-21 105.5 75 77.3
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 1.8e-21 105.5 75 77.3
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 2.4e-21 105.1 79 73.4
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 1.5e-20 102.4 75 72.0
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 3.4e-20 101.3 75 72.0
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 3.4e-20 101.3 75 72.0
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 5.9e-20 100.5 106 57.5
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 5.9e-20 100.5 73 72.6
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 7.6e-20 100.1 75 73.3
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 1.0e-19 99.8 75 72.0
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 1.0e-19 99.8 73 72.6
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 1.0e-19 99.8 73 72.6
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 1.0e-19 99.8 73 72.6
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 1.3e-19 99.4 75 70.7
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 1.3e-19 99.4 75 73.3
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 2.2e-19 98.6 75 72.0
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 2.2e-19 98.6 75 72.0
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 2.2e-19 98.6 75 72.0
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 2.9e-19 98.2 75 72.0
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 2.9e-19 98.2 75 70.7
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 2.9e-19 98.2 75 69.3
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 2.9e-19 98.2 75 69.3
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 2.9e-19 98.2 73 71.2
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 2.9e-19 98.2 73 71.2
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 2.9e-19 98.2 73 71.2
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 3.8e-19 97.8 75 72.0
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 5.0e-19 97.4 75 70.7
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 5.0e-19 97.4 75 70.7
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 5.0e-19 97.4 75 68.0
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 6.5e-19 97.1 75 72.0
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 8.5e-19 96.7 75 69.3
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 8.5e-19 96.7 75 68.0
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 1.1e-18 96.3 75 70.7
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 1.1e-18 96.3 75 70.7
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 1.1e-18 96.3 75 70.7
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 1.1e-18 96.3 72 73.6
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 1.4e-18 95.9 72 73.6
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 1.4e-18 95.9 75 66.7
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 1.9e-18 95.5 72 72.2
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 1.9e-18 95.5 72 72.2
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 1.9e-18 95.5 75 69.3
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.9e-18 95.5 72 72.2
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 1.9e-18 95.5 75 70.7
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 3.2e-18 94.7 73 69.9
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 4.2e-18 94.4 73 69.9
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 4.2e-18 94.4 72 70.8
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 4.2e-18 94.4 73 68.5
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 4.2e-18 94.4 75 68.0
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 4.2e-18 94.4 75 69.3
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 4.2e-18 94.4 72 70.8
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 4.2e-18 94.4 72 70.8
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 5.5e-18 94.0 72 69.4
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 5.5e-18 94.0 73 68.5
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 5.5e-18 94.0 72 70.8
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 7.2e-18 93.6 72 68.1
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 7.2e-18 93.6 72 70.8
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 7.2e-18 93.6 72 70.8
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 7.2e-18 93.6 72 70.8
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 9.3e-18 93.2 75 65.3
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 1.2e-17 92.8 73 68.5
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 1.6e-17 92.4 72 69.4
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 1.6e-17 92.4 72 70.8
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 1.6e-17 92.4 72 68.1
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 2.1e-17 92.0 72 69.4
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 2.1e-17 92.0 72 69.4
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 2.1e-17 92.0 72 69.4
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 2.1e-17 92.0 72 69.4
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 2.1e-17 92.0 72 69.4
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 2.1e-17 92.0 72 69.4
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 2.1e-17 92.0 72 69.4
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 2.1e-17 92.0 72 70.8
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 2.1e-17 92.0 72 69.4
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 2.1e-17 92.0 73 67.1
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 2.1e-17 92.0 72 69.4
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 2.7e-17 91.7 73 68.5
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 2.7e-17 91.7 72 70.8
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 3.6e-17 91.3 72 69.4
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 3.6e-17 91.3 72 69.4
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 3.6e-17 91.3 72 69.4
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 3.6e-17 91.3 72 69.4
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 4.6e-17 90.9 72 69.4
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 6.1e-17 90.5 72 70.8
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 1.0e-16 89.7 72 68.1
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 1.0e-16 89.7 72 68.1
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 1.0e-16 89.7 72 68.1
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 3.0e-16 88.2 72 66.7
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 3.0e-16 88.2 72 63.9
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 3.0e-16 88.2 72 63.9
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 3.0e-16 88.2 73 64.4
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 6.7e-16 87.0 70 70.0
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 2.5e-15 85.1 72 65.3
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 4.3e-15 84.3 72 61.1
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 7.4e-15 83.6 72 66.7
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 1.3e-14 82.8 72 65.3
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 2.8e-14 81.6 71 62.0
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 1.1e-13 79.7 74 60.8
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 1.8e-13 79.0 73 56.2
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 4.1e-13 77.8 42 88.1
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 4.1e-13 77.8 73 57.5
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 6.9e-13 77.0 42 88.1
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 2.0e-12 75.5 72 59.7
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 2.6e-12 75.1 75 60.0
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 2.6e-12 75.1 42 85.7
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 7.7e-12 73.6 72 54.2
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 1.0e-11 73.2 76 50.0
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 1.0e-11 73.2 40 90.0
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 8.5e-11 70.1 42 81.0
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 2.7e-09 65.1 57 64.9
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 7.9e-09 63.5 36 83.3
SHI06094 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-08 62.8 42 71.4
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 3.0e-08 61.6 72 48.6
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 1.1e-07 59.7 74 50.0


User provided reference genes

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