Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G019980 Citrullus lanatus HOM05D001415 ORTHO05D001075 7.8e-18 94.0 110 100.0
MELO3C025900.2 Cucumis melo HOM05D001415 ORTHO05D001075 8.1e-15 84.0 115 63.5
Phvul.011G062700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 2.9e-12 75.5 108 66.7
RcHm_v2.0_Chr5g0065921 Rosa chinensis HOM05D001415 ORTHO05D001075 1.4e-11 73.2 107 63.6
Atru.chr3.3969 Acer truncatum HOM05D001415 ORTHO05D001075 4.2e-11 71.6 31 100.0
Lalb_Chr03g0026501 Lupinus albus HOM05D001415 ORTHO05D001075 4.2e-11 71.6 108 72.2
THA.LOC104826316 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 4.2e-11 71.6 31 100.0
BcaB06g28285 Brassica carinata HOM05D001415 ORTHO05D001075 5.4e-11 71.2 119 57.1
BcaB06g28286 Brassica carinata HOM05D001415 ORTHO05D001075 5.4e-11 71.2 119 57.1
BcaC02g08109 Brassica carinata HOM05D001415 ORTHO05D001075 5.4e-11 71.2 119 58.0
A04p22250 Brassica napus HOM05D008503 ORTHO05D001075 5.4e-11 71.2 119 51.3
BraA04t17777Z Brassica rapa HOM05D008503 ORTHO05D001075 5.4e-11 71.2 119 51.3
Lj3g0014912 Lotus japonicus HOM05D001415 ORTHO05D001075 5.4e-11 71.2 112 49.1
Duzib168G2106 Durio zibethinus HOM05D001415 ORTHO05D001075 7.1e-11 70.9 108 50.9
Gohir.A05G093900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 7.1e-11 70.9 108 58.3
Gohir.D05G094400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 7.1e-11 70.9 108 58.3
Gorai.009G097500 Gossypium raimondii HOM05D001415 ORTHO05D001075 7.1e-11 70.9 108 58.3
COL.COLO4_18559 Corchorus olitorius HOM05D001415 ORTHO05D001075 9.3e-11 70.5 31 96.8
Ciclev10030229m.g Citrus clementina HOM05D001415 ORTHO05D001075 1.2e-10 70.1 108 51.9
Carub.0004s1014 Capsella rubella HOM05D008503 ORTHO05D001075 1.6e-10 69.7 116 64.7
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 1.6e-10 69.7 108 58.3
Medtr4g064520 Medicago truncatula HOM05D001415 ORTHO05D001075 1.6e-10 69.7 108 60.2
Thhalv10017949m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 2.7e-10 68.9 120 61.7
Thecc.09G317800 Theobroma cacao HOM05D001415 ORTHO05D001075 3.5e-10 68.6 108 61.1
AL4G23680 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 4.6e-10 68.2 29 100.0
AT2G29125 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 4.6e-10 68.2 29 100.0
CARHR122420 Cardamine hirsuta HOM05D008503 ORTHO05D001075 4.6e-10 68.2 29 100.0
Cpa.g.sc81.113 Carica papaya HOM05D001415 ORTHO05D001075 4.6e-10 68.2 29 100.0
Cfa011527 Carpinus fangiana HOM05D001415 ORTHO05D001075 4.6e-10 68.2 29 100.0
ClCG03G001360 Citrullus lanatus HOM05D001415 ORTHO05D001075 4.6e-10 68.2 29 100.0
Haze_24132 Corylus avellana HOM05D001415 ORTHO05D001075 4.6e-10 68.2 29 100.0
MELO3C020615.2 Cucumis melo HOM05D001415 ORTHO05D001075 4.6e-10 68.2 29 100.0
CsaV3_1G034460 Cucumis sativus L. HOM05D001415 ORTHO05D001075 4.6e-10 68.2 29 100.0
Duzib150G0909 Durio zibethinus HOM05D001415 ORTHO05D001075 4.6e-10 68.2 29 100.0
Duzib170G0931 Durio zibethinus HOM05D001415 ORTHO05D001075 4.6e-10 68.2 29 100.0
Glyma.12G061000 Glycine max HOM05D008503 ORTHO05D001075 4.6e-10 68.2 108 51.9
Sp4g11940 Schrenkiella parvula HOM05D008503 ORTHO05D001075 4.6e-10 68.2 29 100.0
Sed0002507 Sechium edule HOM05D001415 ORTHO05D001075 4.6e-10 68.2 29 100.0
Sed0008013 Sechium edule HOM05D001415 ORTHO05D001075 4.6e-10 68.2 29 100.0
Sed0023003 Sechium edule HOM05D001415 ORTHO05D001075 4.6e-10 68.2 29 100.0
THA.LOC104800681 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 4.6e-10 68.2 29 100.0
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 4.6e-10 68.2 29 100.0
Potri.001G242800 Populus trichocarpa HOM05D001415 ORTHO05D001075 6.0e-10 67.8 108 62.0
PGR102G0519 Punica granatum HOM05D001415 ORTHO05D001075 6.0e-10 67.8 29 96.6
CiPaw.14G067100 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.0e-09 67.0 29 96.6
Manes.01G170700 Manihot esculenta HOM05D001415 ORTHO05D001075 1.3e-09 66.6 28 100.0
Potri.009G034300 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.3e-09 66.6 108 61.1
CANSAT54G2158 Cannabis sativa HOM05D001415 ORTHO05D001075 1.7e-09 66.2 29 96.6
Prupe.6G072200 Prunus persica HOM05D001415 ORTHO05D001075 1.7e-09 66.2 108 57.4
BcaC07g41995 Brassica carinata HOM05D001415 ORTHO05D001075 2.3e-09 65.9 107 82.2
C08p50550 Brassica napus HOM05D001415 ORTHO05D001075 2.3e-09 65.9 107 82.2
BolC8t52582H Brassica oleracea HOM05D001415 ORTHO05D001075 2.3e-09 65.9 107 82.2
Medtr2g097570 Medicago truncatula HOM05D001415 ORTHO05D001075 2.3e-09 65.9 29 93.1
TPR.G5599 Trifolium pratense HOM05D001415 ORTHO05D001075 2.3e-09 65.9 29 93.1
CiPaw.13G091000 Carya illinoinensis HOM05D001415 ORTHO05D001075 3.0e-09 65.5 29 96.6
Glyma.13G338000 Glycine max HOM05D001415 ORTHO05D001075 3.0e-09 65.5 29 93.1
Glyma.15G036400 Glycine max HOM05D001415 ORTHO05D001075 3.0e-09 65.5 29 93.1
Glyma.18G076400 Glycine max HOM05D001415 ORTHO05D001075 3.0e-09 65.5 29 93.1
Gohir.A13G227216 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.0e-09 65.5 29 93.1
Gohir.D13G232500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.0e-09 65.5 29 93.1
Gorai.013G263300 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.0e-09 65.5 29 93.1
TPR.G23565 Trifolium pratense HOM05D001415 ORTHO05D001075 3.0e-09 65.5 108 47.2
arahy.Tifrunner.gnm1.ann1.K7ANH9 Arachis hypogaea HOM05D001415 ORTHO05D001075 5.1e-09 64.7 29 89.7
Phvul.L007243 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 5.1e-09 64.7 28 92.9
BcaC07g42471 Brassica carinata HOM05D008503 ORTHO05D001075 1.1e-08 63.5 107 75.7
Manes.02G130200 Manihot esculenta HOM05D001415 ORTHO05D001075 1.1e-08 63.5 108 55.6
TWI79G1693 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.1e-08 63.5 109 44.0
arahy.Tifrunner.gnm1.ann1.Z87QWF Arachis hypogaea HOM05D008503 ORTHO05D001075 1.5e-08 63.2 29 86.2
MD03G1087500 Malus domestica HOM05D001415 ORTHO05D001075 1.9e-08 62.8 29 89.7
A09p66390 Brassica napus HOM05D008503 ORTHO05D001075 3.3e-08 62.0 106 57.5
BraA09t41975Z Brassica rapa HOM05D008503 ORTHO05D001075 3.3e-08 62.0 106 57.5
FvH4_3g04210 Fragaria vesca HOM05D008503 ORTHO05D001075 3.3e-08 62.0 28 92.9
Eucgr.B02318 Eucalyptus grandis HOM05D008503 ORTHO05D001075 4.3e-08 61.6 27 96.3
Lalb_Chr01g0003531 Lupinus albus HOM05D008503 ORTHO05D001075 4.3e-08 61.6 105 72.4
AT1G07490 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 5.6e-08 61.2 27 96.3
A10p06020 Brassica napus HOM05D001415 ORTHO05D001075 5.6e-08 61.2 27 96.3
BraA10t42864Z Brassica rapa HOM05D001415 ORTHO05D001075 5.6e-08 61.2 27 96.3
Carub.0001s0681 Capsella rubella HOM05D008503 ORTHO05D001075 5.6e-08 61.2 27 96.3
Sp1g06220 Schrenkiella parvula HOM05D008503 ORTHO05D001075 5.6e-08 61.2 27 96.3
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 7.3e-08 60.8 31 77.4
A08p35630 Brassica napus HOM05D008503 ORTHO05D001075 9.6e-08 60.5 27 92.6
C08p03100 Brassica napus HOM05D008503 ORTHO05D001075 9.6e-08 60.5 27 92.6
BraA08t35469Z Brassica rapa HOM05D008503 ORTHO05D001075 9.6e-08 60.5 27 92.6
Thhalv10009168m.g Eutrema salsugineum HOM05D008503 ORTHO05D001075 1.3e-07 60.1 27 92.6
Glyma.11G137600 Glycine max HOM05D001415 ORTHO05D001075 1.3e-07 60.1 26 92.3
Potri.008G035900 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.3e-07 60.1 31 77.4
Lsat_1_v5_gn_5_169241 Lactuca sativa HOM05D001415 ORTHO05D001075 2.8e-07 58.9 28 85.7
PGR119G1246 Punica granatum HOM05D008503 ORTHO05D001075 3.6e-07 58.5 29 75.9
GSVIVG01025722001 Vitis vinifera HOM05D001415 ORTHO05D001075 4.8e-07 58.2 31 71.0
HanXRQChr01g0010481 Helianthus annuus HOM05D001415 ORTHO05D001075 1.1e-06 57.0 27 85.2
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 1.1e-06 57.0 29 75.9
Oeu053887.1 Olea europaea HOM05D001415 ORTHO05D001075 1.4e-06 56.6 29 75.9
unitig_8.g4710 Utricularia gibba HOM05D001415 ORTHO05D001075 1.4e-06 56.6 30 70.0
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 1.8e-06 56.2 27 81.5
Hma1.2p1_0757F.1_g213305 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 1.8e-06 56.2 27 81.5
Hma1.2p1_0757F.1_g213310 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 1.8e-06 56.2 27 81.5
CiPaw.01G269600 Carya illinoinensis HOM05D001415 ORTHO05D001075 2.4e-06 55.8 30 70.0
HanXRQChr11g0327601 Helianthus annuus HOM05D001415 ORTHO05D001075 2.4e-06 55.8 27 81.5
Nn2g13768 Nelumbo nucifera HOM05D001415 ORTHO05D001075 2.4e-06 55.8 31 74.2
Lj3g0013501 Lotus japonicus HOM05D008503 ORTHO05D001075 3.1e-06 55.5 25 92.0
Nn2g11165 Nelumbo nucifera HOM05D001415 ORTHO05D001075 3.1e-06 55.5 29 72.4
CiPaw.02G172500 Carya illinoinensis HOM05D001415 ORTHO05D001075 4.0e-06 55.1 31 71.0
COL.COLO4_17147 Corchorus olitorius HOM05D001415 ORTHO05D001075 4.0e-06 55.1 29 75.9
Nn2g13402 Nelumbo nucifera HOM05D001415 ORTHO05D001075 4.0e-06 55.1 29 72.4
Prupe.2G209600 Prunus persica HOM05D001415 ORTHO05D001075 4.0e-06 55.1 29 72.4
Rhsim01G0230800 Rhododendron simsii HOM05D001415 ORTHO05D001075 4.0e-06 55.1 25 92.0
Sc12g0001300 Simmondsia chinensis HOM05D001415 ORTHO05D001075 4.0e-06 55.1 29 75.9
Thecc.10G082100 Theobroma cacao HOM05D001415 ORTHO05D001075 4.0e-06 55.1 29 75.9
MD11G1096600 Malus domestica HOM05D001415 ORTHO05D001075 5.3e-06 54.7 24 100.0
Nn2g11570 Nelumbo nucifera HOM05D001415 ORTHO05D001075 5.3e-06 54.7 31 74.2
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 6.9e-06 54.3 29 69.0
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 6.9e-06 54.3 29 69.0
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 6.9e-06 54.3 29 69.0
COL.COLO4_26977 Corchorus olitorius HOM05D001415 ORTHO05D001075 9.0e-06 53.9 31 67.7
MELO3C019818.2 Cucumis melo HOM05D001415 ORTHO05D001075 9.0e-06 53.9 31 71.0
CsaV3_6G036630 Cucumis sativus L. HOM05D001415 ORTHO05D001075 9.0e-06 53.9 31 71.0
Gohir.A10G203600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 9.0e-06 53.9 29 72.4
Gohir.D10G211700 Gossypium hirsutum HOM05D001415 ORTHO05D001075 9.0e-06 53.9 29 72.4
Gorai.011G237600 Gossypium raimondii HOM05D001415 ORTHO05D001075 9.0e-06 53.9 29 72.4
Sc21g0005940 Simmondsia chinensis HOM05D001415 ORTHO05D001075 9.0e-06 53.9 29 75.9


User provided reference genes

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