Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G018390 Citrullus lanatus HOM05D006785 ORTHO05D006259 3.7e-140 501.9 331 100.0
CsaV3_6G015830 Cucumis sativus L. HOM05D006785 ORTHO05D006259 7.9e-122 441.0 331 85.8
MELO3C019688.2 Cucumis melo HOM05D006785 ORTHO05D006259 4.3e-104 382.1 331 80.1
Sed0007746 Sechium edule HOM05D006785 ORTHO05D006259 1.2e-98 364.0 331 77.0
Sed0020726 Sechium edule HOM05D006785 ORTHO05D006259 3.2e-91 339.3 331 64.0
TWI59G0461 Tripterygium wilfordii HOM05D006785 ORTHO05D006259 6.5e-60 235.3 331 54.1
QL08p044083 Quercus lobata HOM05D006785 ORTHO05D006259 7.5e-56 221.9 333 54.7
CANSAT64G1891 Cannabis sativa HOM05D006785 ORTHO05D006259 2.3e-52 210.3 318 56.6
MD09G1151900 Malus domestica HOM05D006785 ORTHO05D006259 1.2e-50 204.5 240 56.2
Cfa021376 Carpinus fangiana HOM05D006785 ORTHO05D006259 2.1e-50 203.8 328 54.0
CiPaw.03G189000 Carya illinoinensis HOM05D006785 ORTHO05D006259 1.0e-49 201.4 319 51.4
MD17G1139500 Malus domestica HOM05D006785 ORTHO05D006259 2.0e-48 197.2 241 55.2
Haze_13495 Corylus avellana HOM05D006785 ORTHO05D006259 3.4e-48 196.4 335 53.7
Prupe.3G172600 Prunus persica HOM05D006785 ORTHO05D006259 3.2e-46 189.9 332 54.2
Manes.02G084200 Manihot esculenta HOM05D006785 ORTHO05D006259 1.7e-44 184.1 328 41.8
FAN02G2853 Fragaria x ananassa HOM05D006785 ORTHO05D006259 3.0e-44 183.3 329 47.4
RcHm_v2.0_Chr2g0151481 Rosa chinensis HOM05D006785 ORTHO05D006259 3.9e-44 183.0 330 49.7
FAN14G2666 Fragaria x ananassa HOM05D006785 ORTHO05D006259 1.9e-43 180.6 331 47.4
CSS0028256 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 2.5e-43 180.3 359 39.6
CSS0047125 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 2.5e-43 180.3 359 39.6
PGR042G2728 Punica granatum HOM05D006785 ORTHO05D006259 4.3e-43 179.5 315 43.2
Lalb_Chr10g0106721 Lupinus albus HOM05D006785 ORTHO05D006259 1.4e-41 174.5 305 53.1
FAN05G2931 Fragaria x ananassa HOM05D006785 ORTHO05D006259 5.2e-41 172.6 329 41.3
AT1G06530 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 3.4e-40 169.9 312 42.6
FAN09G1973 Fragaria x ananassa HOM05D006785 ORTHO05D006259 4.4e-40 169.5 329 41.0
Manes.01G127500 Manihot esculenta HOM05D006785 ORTHO05D006259 7.5e-40 168.7 334 39.8
Actinidia32516 Actinidia chinensis HOM05D006785 ORTHO05D006259 1.9e-38 164.1 350 38.0
Carub.0001s0590 Capsella rubella HOM05D006785 ORTHO05D006259 1.9e-38 164.1 329 38.3
Dinv07090 Davidia involucrata HOM05D006785 ORTHO05D006259 1.0e-36 158.3 348 40.8
THA.LOC104802276 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 6.2e-34 149.1 326 49.7
Atru.chr6.2094 Acer truncatum HOM05D006785 ORTHO05D006259 8.9e-33 145.2 320 40.0
Cpa.g.sc50.80 Carica papaya HOM05D006785 ORTHO05D006259 1.2e-32 144.8 326 44.8
Sp4g24990 Schrenkiella parvula HOM05D006785 ORTHO05D006259 1.5e-32 144.4 321 40.8
Lalb_Chr17g0348301 Lupinus albus HOM05D006785 ORTHO05D006259 1.7e-31 141.0 294 48.0
Ca_06284_v3 Cicer arietinum L. HOM05D006785 ORTHO05D006259 2.9e-31 140.2 295 49.8
arahy.Tifrunner.gnm1.ann1.PX2Y9B Arachis hypogaea HOM05D006785 ORTHO05D006259 7.1e-30 135.6 304 44.4
Glyma.02G287000 Glycine max HOM05D006785 ORTHO05D006259 4.6e-29 132.9 293 44.0
Thhalv10006112m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 1.3e-28 131.3 234 41.5
arahy.Tifrunner.gnm1.ann1.W4MS3F Arachis hypogaea HOM05D006785 ORTHO05D006259 3.9e-28 129.8 304 45.7
vmacro12460 Vaccinium macrocarpon HOM05D006785 ORTHO05D006259 4.3e-27 126.3 304 36.2
C04p03820 Brassica napus HOM05D006785 ORTHO05D006259 5.6e-27 125.9 227 38.3
BraA05t19307Z Brassica rapa HOM05D006785 ORTHO05D006259 5.6e-27 125.9 229 38.0
Medtr5g091710 Medicago truncatula HOM05D006785 ORTHO05D006259 1.2e-26 124.8 310 45.8
Gorai.008G098200 Gossypium raimondii HOM05D006785 ORTHO05D006259 3.6e-26 123.2 296 35.8
THA.LOC104800823 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 8.1e-26 122.1 193 39.9
Phvul.008G191300 Phaseolus vulgaris HOM05D006785 ORTHO05D006259 1.1e-25 121.7 309 40.8
BolC4t22018H Brassica oleracea HOM05D006785 ORTHO05D006259 1.8e-25 120.9 227 37.9
Thhalv10009835m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 1.8e-25 120.9 285 42.8
AT3G58840 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 6.8e-25 119.0 231 41.6
TPR.G12660 Trifolium pratense HOM05D006785 ORTHO05D006259 8.9e-25 118.6 295 42.7
Gohir.A12G079000 Gossypium hirsutum HOM05D006785 ORTHO05D006259 2.0e-24 117.5 316 34.5
AL1G16560 Arabidopsis lyrata HOM05D006785 ORTHO05D006259 3.4e-24 116.7 325 40.6
Ciclev10032336m.g Citrus clementina HOM05D006785 ORTHO05D006259 3.4e-24 116.7 317 36.3
Lj1P620T12 Lonicera japonica HOM05D006785 ORTHO05D006259 3.4e-24 116.7 265 35.8
Gohir.D12G068400 Gossypium hirsutum HOM05D006785 ORTHO05D006259 4.4e-24 116.3 296 34.5
Nn3g20927 Nelumbo nucifera HOM05D006785 ORTHO05D006259 1.7e-23 114.4 355 31.3
Carub.0005s2562 Capsella rubella HOM05D006785 ORTHO05D006259 2.2e-23 114.0 235 36.6
Lalb_Chr05g0211951 Lupinus albus HOM05D006785 ORTHO05D006259 2.9e-23 113.6 206 40.3
CARHR006150 Cardamine hirsuta HOM05D006785 ORTHO05D006259 5.4e-22 109.4 194 40.2
Eucgr.A01969 Eucalyptus grandis HOM05D006785 ORTHO05D006259 1.6e-21 107.8 301 34.2
Potri.005G201400 Populus trichocarpa HOM05D006785 ORTHO05D006259 4.6e-21 106.3 325 42.5
VMungo0647G1995 Vigna mungo HOM05D006785 ORTHO05D006259 6.0e-21 105.9 296 34.5
Gohir.D04G036800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 8.6e-20 102.1 175 44.0
Gorai.012G041600 Gossypium raimondii HOM05D006785 ORTHO05D006259 1.5e-19 101.3 175 44.0
Psat2g015800 Pisum sativum HOM05D006785 ORTHO05D006259 1.5e-19 101.3 299 42.1
arahy.Tifrunner.gnm1.ann1.SE4LXZ Arachis hypogaea HOM05D006785 ORTHO05D006259 2.5e-19 100.5 236 38.6
Glyma.14G027900 Glycine max HOM05D006785 ORTHO05D006259 2.5e-19 100.5 296 39.9
Sp1g05290 Schrenkiella parvula HOM05D006785 ORTHO05D006259 2.5e-19 100.5 158 48.7
Thecc.01G161700 Theobroma cacao HOM05D006785 ORTHO05D006259 5.6e-19 99.4 190 43.7
Aa31LG10G13400 Aethionema arabicum HOM05D006785 ORTHO05D006259 7.3e-19 99.0 170 54.1
LjContig00310g0014416 Lotus japonicus HOM05D006785 ORTHO05D006259 1.2e-18 98.2 316 31.6
DCAR_013314 Daucus carota HOM05D006785 ORTHO05D006259 1.4e-17 94.7 348 29.3
Gohir.A05G378800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 4.0e-17 93.2 238 36.1
CARHR169250 Cardamine hirsuta HOM05D006785 ORTHO05D006259 9.9e-16 88.6 156 42.9
Peaxi162Scf00035g00291 Petunia axillaris HOM05D009485 ORTHO05D006259 4.9e-15 86.3 243 33.3
Potri.002G060200 Populus trichocarpa HOM05D006785 ORTHO05D006259 1.1e-14 85.1 142 57.7
Sabra02G0048700 Salix brachista HOM05D006785 ORTHO05D006259 3.2e-14 83.6 329 41.3
Aa31LG5G5980 Aethionema arabicum HOM05D006785 ORTHO05D006259 9.3e-14 82.0 298 31.9
Duzib264G0099 Durio zibethinus HOM05D006785 ORTHO05D006259 1.6e-13 81.3 186 39.8
A07p24380 Brassica napus HOM05D006785 ORTHO05D006259 2.7e-13 80.5 183 41.0
Hma1.2p1_0960F.1_g241635 Hydrangea macrophylla HOM05D006785 ORTHO05D006259 3.5e-13 80.1 378 29.4
TAR627G0640 Trochodendron aralioides HOM05D006785 ORTHO05D006259 3.0e-12 77.0 249 34.9
C05p04790 Brassica napus HOM05D006785 ORTHO05D006259 3.9e-12 76.6 141 41.8
BcaB02g06783 Brassica carinata HOM05D006785 ORTHO05D006259 1.9e-11 74.3 221 36.7
Gohir.A11G224802 Gossypium hirsutum HOM05D006785 ORTHO05D006259 1.6e-10 71.2 326 34.4
Actinidia11204 Actinidia chinensis HOM05D006785 ORTHO05D006259 2.1e-10 70.9 348 30.2
BcaB02g07495 Brassica carinata HOM05D006785 ORTHO05D006259 2.8e-10 70.5 238 34.9
Rhsim06G0116700 Rhododendron simsii HOM05D006785 ORTHO05D006259 3.6e-10 70.1 339 26.3
Sp5g04020 Schrenkiella parvula HOM05D006785 ORTHO05D006259 4.8e-10 69.7 156 37.8
Duzib147G0591 Durio zibethinus HOM05D006785 ORTHO05D006259 1.1e-09 68.6 312 37.2
MSTRG.6747 Avicennia marina HOM05D009485 ORTHO05D006259 2.4e-09 67.4 159 40.9
Sopen10g003690 Solanum pennellii HOM05D009485 ORTHO05D006259 3.1e-09 67.0 331 27.8
PGSC0003DMG400021282 Solanum tuberosum HOM05D009485 ORTHO05D006259 3.1e-09 67.0 227 41.0
MBI10_g42732_MAGBIO Magnolia biondii HOM05D006785 ORTHO05D006259 4.0e-09 66.6 136 37.5
arahy.Tifrunner.gnm1.ann1.34NIEK Arachis hypogaea HOM05D043406 ORTHO05D031604 6.9e-09 65.9 235 31.9
ECA233G1175 Erigeron canadensis HOM05D009485 ORTHO05D006259 6.9e-09 65.9 228 29.8
BraA07t30085Z Brassica rapa HOM05D006785 ORTHO05D023842 1.2e-08 65.1 174 38.5
Phvul.006G033700 Phaseolus vulgaris HOM05D067041 ORTHO05D020454 1.5e-08 64.7 96 42.7
arahy.Tifrunner.gnm1.ann1.IX2Y2N Arachis hypogaea HOM05D043406 ORTHO05D031604 3.4e-08 63.5 235 31.5
Oeu036701.1 Olea europaea HOM05D006851 ORTHO05D008844 4.5e-08 63.2 327 28.7
Peaxi162Scf00111g00008 Petunia axillaris HOM05D009485 ORTHO05D006259 9.9e-08 62.0 333 27.3
TAR622G1344 Trochodendron aralioides HOM05D006785 ORTHO05D006259 1.3e-07 61.6 142 35.2
TAR629G3165 Trochodendron aralioides HOM05D006785 ORTHO05D006259 1.3e-07 61.6 122 39.3
unitig_747.g21610 Utricularia gibba HOM05D009485 ORTHO05D006259 2.2e-07 60.8 299 31.4
Aa31LG1G7630 Aethionema arabicum HOM05D006785 ORTHO05D006259 2.9e-07 60.5 147 37.4
Duzib187G1417 Durio zibethinus HOM05D006785 ORTHO05D006259 3.8e-07 60.1 190 49.5
TPR.G15576 Trifolium pratense HOM05D021759 ORTHO05D020454 6.4e-07 59.3 225 27.6
Nitab4.5_0001402g0020 Nicotiana tabacum HOM05D009485 ORTHO05D006259 1.9e-06 57.8 235 37.4
Cc05_g09420 Coffea canephora HOM05D009485 ORTHO05D006259 2.4e-06 57.4 335 30.7


User provided reference genes

Program Settings