Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.2e-137 492.3 241 100.0
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 1.5e-122 443.0 242 88.8
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 6.8e-107 391.0 244 78.7
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 1.2e-106 390.2 244 78.3
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.6e-106 389.0 244 78.3
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.6e-106 389.0 244 78.3
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.6e-87 326.6 241 64.7
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 6.0e-87 324.7 216 71.8
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 6.2e-84 314.7 241 63.1
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 1.1e-83 313.9 241 63.5
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 1.4e-83 313.5 241 62.7
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 8.9e-83 310.8 240 62.1
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 5.4e-80 301.6 235 62.6
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 5.4e-80 301.6 235 62.6
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 7.1e-80 301.2 233 62.2
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.2e-79 300.4 231 62.8
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.2e-79 300.4 242 62.0
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 6.0e-79 298.1 208 73.1
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.0e-78 297.4 241 59.3
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.7e-78 296.6 241 58.1
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 3.0e-78 295.8 241 59.3
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 3.9e-78 295.4 241 58.9
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 6.6e-78 294.7 242 58.3
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 8.6e-78 294.3 241 58.1
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 1.1e-77 293.9 242 58.3
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 3.3e-77 292.4 241 56.8
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 1.6e-76 290.0 234 62.0
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 3.6e-76 288.9 241 58.9
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 3.1e-75 285.8 233 59.2
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 2.6e-74 282.7 231 58.9
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.6e-74 282.7 245 58.4
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.3e-73 280.4 231 58.9
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.3e-73 280.4 241 55.2
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 2.9e-73 279.3 231 58.0
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 3.8e-73 278.9 235 59.6
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 8.4e-73 277.7 242 55.8
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.9e-72 276.6 231 57.6
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 7.1e-72 274.6 241 55.2
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 2.1e-71 273.1 243 57.2
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 1.3e-70 270.4 240 55.0
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 1.9e-69 266.5 233 54.5
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 1.9e-69 266.5 247 53.8
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 2.5e-69 266.2 240 55.4
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 5.6e-69 265.0 242 55.0
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 5.6e-69 265.0 200 62.0
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 9.6e-69 264.2 242 55.0
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.3e-68 263.8 241 55.6
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.4e-67 259.6 241 53.9
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 6.9e-67 258.1 238 53.4
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 9.0e-67 257.7 231 51.9
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.5e-66 256.9 241 53.1
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.5e-66 256.9 241 53.1
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.0e-66 256.5 241 53.1
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 2.6e-66 256.1 212 59.9
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 2.6e-66 256.1 241 53.1
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.3e-65 253.8 241 52.7
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 2.2e-65 253.1 239 54.4
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.9e-65 252.7 226 54.9
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 6.4e-65 251.5 237 52.3
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 7.1e-64 248.1 231 49.8
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 9.3e-64 247.7 241 49.4
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 1.2e-63 247.3 240 51.2
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.1e-63 246.5 231 50.2
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 3.5e-63 245.7 234 50.0
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 3.5e-63 245.7 225 51.6
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 6.0e-63 245.0 239 50.2
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.0e-62 244.2 240 50.0
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.3e-62 243.0 236 53.4
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.3e-62 243.0 240 50.0
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 8.7e-62 241.1 232 49.6
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 3.3e-61 239.2 233 53.2
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 4.3e-61 238.8 234 53.4
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 4.3e-61 238.8 239 49.8
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 7.4e-61 238.0 241 49.0
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 1.3e-60 237.3 217 51.6
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.1e-60 236.5 232 49.6
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 3.6e-60 235.7 243 51.0
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 4.8e-60 235.3 198 58.6
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 4.8e-60 235.3 241 49.0
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 8.1e-60 234.6 214 51.9
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 1.4e-59 233.8 231 49.8
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 1.4e-59 233.8 200 52.0
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 5.3e-59 231.9 241 48.5
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 6.9e-59 231.5 241 49.0
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 2.0e-58 229.9 232 51.3
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 2.0e-58 229.9 238 50.8
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 2.6e-58 229.6 233 49.8
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 2.6e-58 229.6 227 49.3
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 4.5e-58 228.8 237 51.1
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 9.9e-58 227.6 233 47.6
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.7e-57 226.9 231 48.1
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 1.1e-56 224.2 235 48.9
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.4e-56 223.0 226 50.0
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 3.2e-56 222.6 240 47.9
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.2e-55 220.7 234 46.6
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 2.1e-55 219.9 239 47.7
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 3.5e-55 219.2 242 46.7
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 4.6e-55 218.8 232 47.0
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 7.9e-55 218.0 246 47.6
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.0e-54 217.6 242 46.7
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.3e-54 217.2 217 51.2
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 1.9e-53 213.4 233 48.1
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 1.9e-53 213.4 233 48.1
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 2.5e-53 213.0 225 48.0
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 3.3e-53 212.6 233 47.6
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 3.3e-53 212.6 241 46.1
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 4.3e-53 212.2 233 47.6
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 4.3e-53 212.2 233 47.6
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 5.6e-53 211.8 154 62.3
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 5.6e-53 211.8 233 46.4
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 7.4e-53 211.5 245 45.3
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.4e-51 207.2 244 45.1
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 1.8e-51 206.8 233 46.4
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 6.9e-51 204.9 233 46.4
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 1.2e-50 204.1 234 47.0
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 1.5e-50 203.8 234 45.7
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 3.4e-50 202.6 232 46.1
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 4.5e-50 202.2 154 61.0
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 4.9e-49 198.7 241 46.1
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 1.1e-48 197.6 229 45.0
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 1.1e-48 197.6 210 47.1
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 2.5e-48 196.4 233 44.2
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 7.1e-48 194.9 233 44.2
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 9.3e-48 194.5 232 46.6
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-47 194.1 239 44.8
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 2.7e-47 193.0 194 48.5
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 3.5e-47 192.6 234 43.6
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 4.6e-47 192.2 239 43.5
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 6.0e-47 191.8 232 46.1
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 6.0e-47 191.8 181 50.3
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.0e-46 191.0 212 44.8
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 2.3e-46 189.9 212 44.8
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 2.5e-45 186.4 217 41.5
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.8e-44 183.0 165 53.3
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 4.8e-44 182.2 227 43.2
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 8.2e-44 181.4 153 56.9
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 3.1e-43 179.5 214 39.3
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 2.0e-42 176.8 237 37.6
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 4.5e-42 175.6 216 40.7
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 5.9e-42 175.3 154 52.6
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 2.2e-41 173.3 235 42.1
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 2.2e-41 173.3 235 42.1
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 2.2e-41 173.3 178 46.6
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 6.5e-41 171.8 217 38.7
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 8.5e-41 171.4 147 55.8
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 2.5e-40 169.9 217 37.3
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 1.2e-39 167.5 242 41.7
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 1.6e-39 167.2 218 39.0
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 7.9e-39 164.9 123 60.2
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 1.3e-38 164.1 212 42.0
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.0e-38 162.9 217 43.3
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 5.1e-38 162.2 172 50.0
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 4.8e-36 155.6 145 54.5
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 1.2e-34 151.0 118 61.9
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 7.7e-34 148.3 217 35.0
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 3.8e-33 146.0 230 33.0
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 1.4e-32 144.1 191 36.1
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.4e-29 132.5 207 39.6
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 2.8e-28 129.8 139 42.4
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 8.5e-25 118.2 113 51.3
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 8.5e-25 118.2 80 66.2
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.9e-24 117.1 202 37.1
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 2.3e-22 110.2 88 58.0
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 2.0e-21 107.1 139 43.9
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.7e-21 105.5 141 41.8
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 7.4e-21 105.1 91 53.8
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.7e-20 104.0 92 51.1
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 8.2e-20 101.7 226 32.3
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 2.4e-19 100.1 130 43.8
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 5.3e-19 99.0 92 50.0
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 2.9e-17 93.2 78 53.8
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 3.6e-15 86.3 80 50.0
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 6.1e-15 85.5 101 41.6
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 1.0e-14 84.7 168 29.2
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 1.4e-14 84.3 100 42.0
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 1.4e-11 74.3 99 35.4
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 9.1e-11 71.6 54 59.3
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.7e-09 67.4 78 38.5
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 9.4e-08 61.6 68 52.9
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 3.0e-06 56.6 104 37.5
Thecc.03G134500 Theobroma cacao HOM05D003762 ORTHO05D004374 8.8e-06 55.1 73 41.1


User provided reference genes

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