Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 2.7e-109 398.7 202 100.0
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 3.1e-97 358.6 201 91.5
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 1.0e-95 353.6 202 91.6
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 2.6e-75 285.8 206 77.2
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 8.3e-66 254.2 202 66.3
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 2.4e-65 252.7 205 65.4
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 3.2e-65 252.3 203 65.5
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 5.4e-65 251.5 202 65.8
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 9.2e-65 250.8 202 68.3
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.0e-64 249.6 202 65.3
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 2.0e-64 249.6 196 67.9
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 2.7e-64 249.2 211 65.4
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 6.0e-64 248.1 202 66.3
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 8.6e-63 244.2 202 65.8
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 8.6e-63 244.2 202 64.9
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.5e-62 243.4 204 66.2
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.5e-62 242.7 202 64.4
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 2.5e-62 242.7 202 64.4
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 5.6e-62 241.5 206 64.6
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 5.6e-62 241.5 198 65.7
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 1.6e-61 240.0 194 67.0
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 4.7e-61 238.4 204 64.2
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 6.2e-61 238.0 195 64.1
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 8.0e-61 237.7 192 67.7
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 1.1e-60 237.3 192 65.6
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 1.8e-60 236.5 191 68.1
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 2.3e-60 236.1 201 64.7
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 1.2e-59 233.8 199 64.3
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 1.5e-59 233.4 205 62.4
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 2.0e-59 233.0 178 68.0
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 2.6e-59 232.6 209 63.2
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 3.4e-59 232.3 197 63.5
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 2.2e-58 229.6 147 78.2
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 4.9e-58 228.4 200 61.0
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 4.9e-58 228.4 213 59.6
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 6.4e-58 228.0 216 57.9
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 8.3e-58 227.6 209 64.1
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 1.9e-57 226.5 214 61.2
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 3.2e-57 225.7 201 61.2
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 3.2e-57 225.7 203 63.1
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 4.1e-57 225.3 212 60.4
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 5.4e-57 224.9 192 64.1
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 5.4e-57 224.9 218 58.3
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 5.4e-57 224.9 206 61.2
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 1.6e-56 223.4 207 61.4
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 2.7e-56 222.6 190 62.1
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 2.7e-56 222.6 190 62.1
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 3.5e-56 222.2 146 75.3
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 1.3e-55 220.3 120 86.7
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.3e-55 220.3 148 70.9
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 1.7e-55 219.9 190 63.7
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 1.7e-55 219.9 193 61.1
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 3.0e-55 219.2 191 63.4
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 3.9e-55 218.8 204 62.3
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 3.9e-55 218.8 147 71.4
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 3.9e-55 218.8 194 60.3
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 5.1e-55 218.4 204 60.8
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 1.1e-54 217.2 197 58.4
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 1.1e-54 217.2 191 62.3
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 2.5e-54 216.1 147 73.5
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 3.3e-54 215.7 157 68.2
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 3.3e-54 215.7 183 63.4
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 3.3e-54 215.7 154 70.1
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 4.3e-54 215.3 204 58.3
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 4.3e-54 215.3 203 60.6
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 5.6e-54 214.9 206 56.8
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 1.2e-53 213.8 204 60.8
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 1.2e-53 213.8 195 60.5
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 1.6e-53 213.4 190 63.2
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 2.8e-53 212.6 202 58.4
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 8.1e-53 211.1 152 68.4
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 8.1e-53 211.1 203 60.1
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 1.4e-52 210.3 212 57.1
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 3.1e-52 209.1 188 56.9
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 5.2e-52 208.4 203 58.6
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 6.8e-52 208.0 174 64.9
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 1.2e-51 207.2 144 71.5
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 1.2e-51 207.2 208 57.2
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 2.6e-51 206.1 138 72.5
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 2.6e-51 206.1 138 71.7
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 3.4e-51 205.7 138 73.2
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 4.4e-51 205.3 195 56.9
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 9.9e-51 204.1 196 56.1
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 1.3e-50 203.8 191 58.1
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 2.9e-50 202.6 177 59.9
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 8.3e-50 201.1 162 62.3
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 8.3e-50 201.1 151 68.2
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 8.3e-50 201.1 153 67.3
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 1.9e-49 199.9 133 72.2
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 4.1e-49 198.7 214 54.7
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 1.2e-48 197.2 155 63.2
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 1.6e-48 196.8 141 68.1
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 4.6e-48 195.3 207 54.1
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 1.0e-47 194.1 202 55.0
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 1.0e-47 194.1 207 54.1
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 2.3e-47 193.0 175 60.6
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 5.1e-47 191.8 145 64.8
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 5.1e-47 191.8 145 65.5
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 5.1e-47 191.8 113 76.1
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 6.6e-47 191.4 207 54.1
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 6.6e-47 191.4 207 54.1
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 8.6e-47 191.0 203 55.2
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 1.5e-46 190.3 150 60.7
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 4.3e-46 188.7 113 75.2
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 7.3e-46 188.0 196 55.6
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 7.3e-46 188.0 139 64.0
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 2.1e-45 186.4 184 57.1
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 4.7e-45 185.3 173 57.8
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 6.2e-45 184.9 173 59.0
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 2.4e-44 183.0 109 78.0
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 2.4e-44 183.0 203 51.7
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 8.9e-44 181.0 109 77.1
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 4.4e-43 178.7 173 57.8
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 5.8e-43 178.3 174 54.0
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 8.4e-42 174.5 150 58.0
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 1.4e-41 173.7 146 60.3
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 4.2e-41 172.2 108 73.1
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 2.7e-40 169.5 113 67.3
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 1.1e-38 164.1 115 65.2
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 7.3e-38 161.4 167 55.1
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 1.2e-32 144.1 117 63.2
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 3.9e-31 139.0 154 50.0
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 9.6e-30 134.4 172 43.6
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 1.1e-28 131.0 175 42.9
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 9.3e-25 117.9 117 49.6
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 3.5e-24 115.9 150 40.7
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 2.5e-14 83.2 88 46.6
Actinidia36920 Actinidia chinensis HOM05D006377 ORTHO05D057244 1.5e-11 73.9 136 41.2


User provided reference genes

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