Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G008450 Citrullus lanatus HOM05D001891 ORTHO05D005832 0.0e+00 1106.3 540 100.0
CsaV3_2G035180 Cucumis sativus L. HOM05D001891 ORTHO05D005832 4.7e-249 864.4 473 89.6
MELO3C019236.2 Cucumis melo HOM05D001891 ORTHO05D005832 2.2e-246 855.5 468 88.9
Dinv39687 Davidia involucrata HOM05D001891 ORTHO05D005832 2.9e-182 642.5 475 66.9
Cfa014439 Carpinus fangiana HOM05D001891 ORTHO05D005832 9.7e-178 627.5 475 65.7
Sed0014701 Sechium edule HOM05D001891 ORTHO05D005832 3.7e-177 625.5 366 83.9
Haze_12897 Corylus avellana HOM05D001891 ORTHO05D005832 1.8e-176 623.2 482 65.1
CiPaw.03G162900 Carya illinoinensis HOM05D001891 ORTHO05D005832 2.4e-176 622.9 475 64.4
Ciclev10015025m.g Citrus clementina HOM05D001891 ORTHO05D005832 2.2e-174 616.3 480 65.4
GSVIVG01030624001 Vitis vinifera HOM05D001891 ORTHO05D005832 6.5e-174 614.8 474 66.5
CSS0020073 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D005832 1.6e-172 610.1 469 65.0
arahy.Tifrunner.gnm1.ann1.XAPR04 Arachis hypogaea HOM05D001891 ORTHO05D005832 3.3e-170 602.4 471 63.1
Psat5g265280 Pisum sativum HOM05D001891 ORTHO05D005832 9.7e-170 600.9 470 62.6
Manes.13G073100 Manihot esculenta HOM05D001891 ORTHO05D005832 2.8e-169 599.4 471 64.3
Nn1g03668 Nelumbo nucifera HOM05D001891 ORTHO05D005832 2.8e-169 599.4 470 63.0
MD09G1105100 Malus domestica HOM05D001891 ORTHO05D005832 3.7e-169 599.0 481 63.0
Prupe.3G220400 Prunus persica HOM05D001891 ORTHO05D005832 3.1e-168 595.9 472 64.0
Thecc.02G162300 Theobroma cacao HOM05D001891 ORTHO05D005832 3.1e-168 595.9 474 63.1
Aqoxy4G02100 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 1.2e-167 594.0 477 63.1
QL08p033823 Quercus lobata HOM05D001891 ORTHO05D005832 3.4e-167 592.4 448 65.4
arahy.Tifrunner.gnm1.ann1.IG5XIH Arachis hypogaea HOM05D001891 ORTHO05D005832 7.7e-167 591.3 471 62.4
Eucgr.K00860 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.6e-164 583.6 469 60.8
Lalb_Chr24g0393071 Lupinus albus HOM05D001891 ORTHO05D005832 1.6e-164 583.6 475 61.9
RcHm_v2.0_Chr2g0160071 Rosa chinensis HOM05D001891 ORTHO05D005832 2.7e-164 582.8 472 62.9
Medtr2g088820 Medicago truncatula HOM05D001891 ORTHO05D005832 6.1e-164 581.6 471 60.5
VMungo1080G1248 Vigna mungo HOM05D001891 ORTHO05D005832 1.4e-163 580.5 471 63.5
TPR.G4158 Trifolium pratense HOM05D001891 ORTHO05D005832 1.8e-163 580.1 477 60.4
PSO541G2722 Papaver somniferum HOM05D001891 ORTHO05D005832 2.3e-163 579.7 474 58.4
Glyma.12G195700 Glycine max HOM05D001891 ORTHO05D005832 5.1e-163 578.6 474 62.9
Duzib052G0092 Durio zibethinus HOM05D001891 ORTHO05D005832 8.8e-163 577.8 482 62.2
Eucgr.K00822 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.3e-161 573.9 469 59.9
PGR142G2396 Punica granatum HOM05D001891 ORTHO05D005832 2.2e-161 573.2 476 59.9
Phvul.005G113700 Phaseolus vulgaris HOM05D001891 ORTHO05D005832 8.2e-161 571.2 471 62.2
TAR624G1196 Trochodendron aralioides HOM05D001891 ORTHO05D005832 1.4e-160 570.5 449 65.0
FAN09G1075 Fragaria x ananassa HOM05D001891 ORTHO05D005832 1.8e-160 570.1 469 62.5
Actinidia12502 Actinidia chinensis HOM05D001891 ORTHO05D005832 3.1e-160 569.3 505 58.4
MBI18_g19140_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 4.1e-160 568.9 478 60.3
COL.COLO4_12984 Corchorus olitorius HOM05D001891 ORTHO05D005832 2.0e-159 566.6 466 61.6
Solyc07g052570.4 Solanum lycopersicum HOM05D001891 ORTHO05D005832 2.0e-159 566.6 477 60.2
CANSAT64G2761 Cannabis sativa HOM05D001891 ORTHO05D005832 4.5e-159 565.5 470 61.7
TWI18G0733 Tripterygium wilfordii HOM05D001891 ORTHO05D005832 1.7e-158 563.5 483 59.6
Lj3g0012140 Lotus japonicus HOM05D001891 ORTHO05D005832 8.5e-158 561.2 471 60.5
Rhsim06G0158100 Rhododendron simsii HOM05D001891 ORTHO05D005832 1.4e-157 560.5 443 62.8
Sopen07g026180 Solanum pennellii HOM05D001891 ORTHO05D005832 1.4e-157 560.5 494 58.7
Gorai.002G016300 Gossypium raimondii HOM05D001891 ORTHO05D005832 4.7e-156 555.4 479 59.1
Gohir.A01G013300 Gossypium hirsutum HOM05D001891 ORTHO05D005832 3.9e-155 552.4 475 59.8
MBI18_g23508_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 3.9e-155 552.4 488 58.6
Ah.15g093450 Amaranthus hybridus HOM05D001891 ORTHO05D005832 6.7e-155 551.6 481 57.2
Gohir.D01G014600 Gossypium hirsutum HOM05D001891 ORTHO05D005832 1.5e-154 550.4 479 58.9
FAN02G0497 Fragaria x ananassa HOM05D001891 ORTHO05D005832 4.4e-154 548.9 498 58.4
Sp3g19820 Schrenkiella parvula HOM05D001891 ORTHO05D005832 9.7e-154 547.7 479 58.2
vmacro12227 Vaccinium macrocarpon HOM05D001891 ORTHO05D005832 1.3e-153 547.4 428 64.3
EL10Ac7g17313 Beta vulgaris HOM05D001891 ORTHO05D005832 2.2e-153 546.6 480 56.9
Peaxi162Scf00007g01229 Petunia axillaris HOM05D001891 ORTHO05D005832 4.8e-153 545.4 511 56.0
THA.LOC104821752 Tarenaya hassleriana HOM05D001891 ORTHO05D005832 8.2e-153 544.7 478 58.6
FAN05G1073 Fragaria x ananassa HOM05D001891 ORTHO05D005832 9.1e-152 541.2 472 60.6
Cc05_g05050 Coffea canephora HOM05D001891 ORTHO05D005832 3.5e-151 539.3 484 56.8
AL3G35970 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 5.9e-151 538.5 479 59.5
Migut.M00395 Erythranthe guttata HOM05D001891 ORTHO05D005832 7.7e-151 538.1 478 57.7
Thhalv10020639m.g Eutrema salsugineum HOM05D001891 ORTHO05D005832 7.7e-151 538.1 480 58.8
Potri.017G038700 Populus trichocarpa HOM05D001891 ORTHO05D005832 2.2e-150 536.6 470 57.4
Oeu041941.2 Olea europaea HOM05D001891 ORTHO05D005832 8.5e-150 534.6 453 58.1
AT3G21820 Arabidopsis thaliana HOM05D001891 ORTHO05D005832 2.5e-149 533.1 479 58.2
Carub.0003s2190 Capsella rubella HOM05D001891 ORTHO05D005832 3.2e-149 532.7 480 58.3
SalBow7G4184 Salvia bowleyana HOM05D001891 ORTHO05D005832 3.2e-149 532.7 477 56.4
Aa31LG8G8410 Aethionema arabicum HOM05D001891 ORTHO05D005832 7.2e-149 531.6 473 58.6
Eucgr.K00839 Eucalyptus grandis HOM05D001891 ORTHO05D005832 3.6e-148 529.3 439 58.8
HanXRQChr10g0297501 Helianthus annuus HOM05D001891 ORTHO05D005832 2.8e-145 519.6 474 57.0
ECA238G0562 Erigeron canadensis HOM05D001891 ORTHO05D005832 3.7e-145 519.2 474 58.0
C05p41560 Brassica napus HOM05D001891 ORTHO05D005832 4.8e-145 518.8 482 56.0
BolC5t32893H Brassica oleracea HOM05D001891 ORTHO05D005832 4.8e-145 518.8 482 56.0
BcaC05g28122 Brassica carinata HOM05D001891 ORTHO05D005832 6.3e-145 518.5 480 56.0
Sabra17G0025700 Salix brachista HOM05D001891 ORTHO05D005832 2.4e-144 516.5 470 56.2
CARHR097810 Cardamine hirsuta HOM05D001891 ORTHO05D005832 1.6e-143 513.8 473 56.9
Atru.chr6.3148 Acer truncatum HOM05D001891 ORTHO05D005832 7.7e-143 511.5 424 61.3
Cpa.g.sc8.235 Carica papaya HOM05D001891 ORTHO05D005832 1.9e-141 506.9 473 59.0
CAN.G921.8 Capsicum annuum HOM05D001891 ORTHO05D005832 2.7e-140 503.1 422 61.4
A05p26920 Brassica napus HOM05D001891 ORTHO05D005832 3.6e-140 502.7 452 57.7
BraA05t21572Z Brassica rapa HOM05D001891 ORTHO05D005832 3.6e-140 502.7 452 57.7
unitig_26.g9659 Utricularia gibba HOM05D001891 ORTHO05D005832 2.6e-138 496.5 479 54.1
BcaB06g26287 Brassica carinata HOM05D001891 ORTHO05D005832 3.4e-138 496.1 466 55.4
Nitab4.5_0001176g0150 Nicotiana tabacum HOM05D001891 ORTHO05D005832 4.1e-136 489.2 420 60.5
Zm00001eb069580 Zea mays HOM05D001891 ORTHO05D005832 1.8e-131 473.8 475 50.9
Os04g0629100 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D005832 5.7e-130 468.8 479 50.9
CDE01G0775 Ceratophyllum demersum HOM05D001891 ORTHO05D005832 1.1e-128 464.5 476 50.0
FAN14G5299 Fragaria x ananassa HOM05D001891 ORTHO05D005832 1.4e-128 464.2 387 62.5
SGA_v2.0_scaffold70G23419 Striga asiatica HOM05D001891 ORTHO05D005832 1.7e-126 457.2 471 50.7
Eucgr.K00819 Eucalyptus grandis HOM05D001891 ORTHO05D005832 2.3e-123 446.8 410 56.6
ATR0804G013 Amborella trichopoda HOM05D001891 ORTHO05D005832 3.9e-118 429.5 417 53.2
Hund01107 Selenicereus undatus HOM05D001891 ORTHO05D005832 7.3e-117 425.2 386 58.3
Eucgr.K00818 Eucalyptus grandis HOM05D001891 ORTHO05D005832 6.2e-116 422.2 463 48.4
MBI18_g07895_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.4e-107 394.4 381 54.3
Sc12g0002380 Simmondsia chinensis HOM05D001891 ORTHO05D005832 3.4e-106 389.8 328 58.8
Mapoly0057s0093 Marchantia polymorpha HOM05D001891 ORTHO05D005832 5.8e-106 389.0 458 45.4
Aqoxy4G02096 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 1.1e-104 384.8 308 63.6
AL3G35980 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 4.6e-103 379.4 346 56.9
FvH4_6g43540 Fragaria vesca HOM05D001891 ORTHO05D005832 1.2e-100 371.3 272 68.4
Lj8A122T61 Lonicera japonica HOM05D001891 ORTHO05D005832 4.0e-99 366.3 272 68.0
Pp3c13_21910 Physcomitrium patens HOM05D001891 ORTHO05D005832 2.6e-98 363.6 467 42.8
HPP92_009396 Vanilla planifolia HOM05D001891 ORTHO05D005832 2.7e-95 353.6 454 45.2
Glyma.13G306800 Glycine max HOM05D001891 ORTHO05D005832 1.2e-87 328.2 357 51.5
SMO347G0022 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 2.4e-83 313.9 455 40.9
AUR62040522 Chenopodium quinoa HOM05D001891 ORTHO05D005832 6.9e-83 312.4 286 56.3
DCAR_012957 Daucus carota HOM05D001891 ORTHO05D005832 1.1e-75 288.5 254 56.3
Eucgr.K00824 Eucalyptus grandis HOM05D001891 ORTHO05D005832 2.0e-74 284.3 467 39.2
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 4.5e-74 283.1 324 49.1
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 4.5e-74 283.1 324 49.1
DCAR_012956 Daucus carota HOM05D001891 ORTHO05D005832 1.0e-65 255.4 187 67.9
Nitab4.5_0005894g0040 Nicotiana tabacum HOM05D001891 ORTHO05D005832 1.2e-63 248.4 471 35.2
SMO167G0005 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 1.5e-61 241.5 357 41.2
MCO06G294 Micromonas commoda HOM05D001891 ORTHO05D005832 4.1e-59 233.4 514 32.1
Cre01.g041100 Chlamydomonas reinhardtii HOM05D001891 ORTHO05D005832 2.9e-57 227.3 589 31.1
HPP92_009391 Vanilla planifolia HOM05D001891 ORTHO05D005832 6.5e-57 226.1 278 48.2
PGSC0003DMG400026174 Solanum tuberosum HOM05D001891 ORTHO05D005832 2.8e-52 210.7 151 68.9
MBI18_g41217_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.6e-47 194.9 148 70.3
MBI18_g17390_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 2.3e-46 191.0 176 52.3
Psat0s4720g0040 Pisum sativum HOM05D001891 ORTHO05D005832 1.4e-40 171.8 144 58.3
arahy.Tifrunner.gnm1.ann1.R1IBZY Arachis hypogaea HOM05D001891 ORTHO05D005832 1.1e-37 162.2 92 81.5
Eucgr.K00821 Eucalyptus grandis HOM05D001891 ORTHO05D005832 2.6e-37 161.0 92 77.2
arahy.Tifrunner.gnm1.ann1.2VZW82 Arachis hypogaea HOM05D001891 ORTHO05D005832 1.8e-35 154.8 107 71.0
Atru.chr8.690 Acer truncatum HOM05D001891 ORTHO05D005832 4.5e-34 150.2 142 59.2
arahy.Tifrunner.gnm1.ann1.62D34N Arachis hypogaea HOM05D001891 ORTHO05D005832 5.0e-33 146.7 94 72.3
MBI18_g41692_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 8.5e-33 146.0 136 52.2
AL5G18570 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 1.5e-32 145.2 170 45.9
SEGI_20287 Sequoiadendron giganteum HOM05D001891 ORTHO05D005832 5.5e-32 143.3 137 51.1
arahy.Tifrunner.gnm1.ann1.I3MG1X Arachis hypogaea HOM05D001891 ORTHO05D005832 1.7e-28 131.7 91 71.4
arahy.Tifrunner.gnm1.ann1.LNA654 Arachis hypogaea HOM05D001891 ORTHO05D005832 5.0e-25 120.2 69 75.4
arahy.Tifrunner.gnm1.ann1.I8ZYWJ Arachis hypogaea HOM05D001891 ORTHO05D005832 1.1e-24 119.0 69 75.4
Psat1g072160 Pisum sativum HOM05D002713 ORTHO05D008299 1.9e-24 118.2 72 70.8
MBI18_g10800_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.5e-21 108.6 142 47.9
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 9.1e-19 99.4 115 47.8
Actinidia32078 Actinidia chinensis HOM05D001891 ORTHO05D005832 5.9e-18 96.7 61 75.4
ATR0008G001 Amborella trichopoda HOM05D001891 ORTHO05D005832 1.7e-17 95.1 141 40.4
Glyma.13G037950 Glycine max HOM05D001891 ORTHO05D005832 9.5e-16 89.4 178 35.4
SEGI_29039 Sequoiadendron giganteum HOM05D001891 ORTHO05D005832 2.8e-15 87.8 131 36.6
arahy.Tifrunner.gnm1.ann1.J663RV Arachis hypogaea HOM05D002828 ORTHO05D003457 8.9e-14 82.8 144 36.1
arahy.Tifrunner.gnm1.ann1.Q3H55W Arachis hypogaea HOM05D003444 ORTHO05D003963 4.4e-13 80.5 97 45.4
arahy.Tifrunner.gnm1.ann1.TRUR1F Arachis hypogaea HOM05D001891 ORTHO05D005832 1.3e-12 79.0 44 77.3
arahy.Tifrunner.gnm1.ann1.WYE7TV Arachis hypogaea HOM05D003444 ORTHO05D003963 1.3e-12 79.0 138 36.2
AL7G32320 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 3.2e-11 74.3 51 72.5
MBI01_g06556_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 3.2e-11 74.3 73 54.8
MBI02_g41952_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.2e-11 74.3 46 69.6
arahy.Tifrunner.gnm1.ann1.6T7UPN Arachis hypogaea HOM05D003636 ORTHO05D005832 1.2e-10 72.4 81 48.1
AUR62040523 Chenopodium quinoa HOM05D001891 ORTHO05D005832 3.9e-09 67.4 50 60.0
arahy.Tifrunner.gnm1.ann1.FTMH30 Arachis hypogaea HOM05D001891 ORTHO05D005832 3.3e-08 64.3 43 69.8
MBI02_g40253_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D012380 3.3e-08 64.3 49 59.2
arahy.Tifrunner.gnm1.ann1.XBI7UF Arachis hypogaea HOM05D003444 ORTHO05D003963 5.6e-08 63.5 89 41.6
MBI09_g25176_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D012380 5.6e-08 63.5 43 65.1
MBI03_g41360_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D012380 1.2e-07 62.4 43 62.8
Nitab4.5_0001176g0160 Nicotiana tabacum HOM05D001891 ORTHO05D005832 6.1e-07 60.1 57 47.4
MBI01_g08957_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 2.3e-06 58.2 48 56.2


User provided reference genes

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