Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G008120 Citrullus lanatus HOM05D002864 ORTHO05D008485 9.4e-83 310.1 149 100.0
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 5.8e-16 88.2 53 81.1
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 5.8e-16 88.2 53 81.1
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 5.8e-16 88.2 53 81.1
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 5.8e-16 88.2 53 81.1
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 9.9e-16 87.4 53 81.1
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 9.9e-16 87.4 53 81.1
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 9.9e-16 87.4 53 81.1
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 9.9e-16 87.4 53 81.1
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 9.9e-16 87.4 53 81.1
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 9.9e-16 87.4 53 81.1
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 9.9e-16 87.4 53 81.1
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 9.9e-16 87.4 53 81.1
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 9.9e-16 87.4 53 81.1
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 1.3e-15 87.0 53 81.1
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 1.3e-15 87.0 53 81.1
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 1.7e-15 86.7 53 81.1
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 1.7e-15 86.7 53 79.2
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 1.7e-15 86.7 53 79.2
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 1.7e-15 86.7 53 79.2
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 1.7e-15 86.7 53 79.2
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 1.7e-15 86.7 53 79.2
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 1.7e-15 86.7 53 79.2
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 1.7e-15 86.7 53 79.2
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 1.7e-15 86.7 53 79.2
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 3.8e-15 85.5 53 79.2
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 6.4e-15 84.7 55 76.4
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 2.4e-14 82.8 53 77.4
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 2.4e-14 82.8 53 77.4
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 4.2e-14 82.0 53 77.4
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 4.2e-14 82.0 53 77.4
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 4.2e-14 82.0 53 77.4
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 9.3e-14 80.9 53 75.5
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 9.3e-14 80.9 53 75.5
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 9.3e-14 80.9 53 75.5
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 9.3e-14 80.9 48 83.3
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 3.5e-13 79.0 54 77.8
ClCG06G009270 Citrullus lanatus HOM05D002864 ORTHO05D008485 6.0e-13 78.2 53 69.8
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 7.9e-13 77.8 53 71.7
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 7.9e-13 77.8 49 77.6
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 1.3e-12 77.0 54 74.1
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 1.8e-12 76.6 54 75.9
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 1.8e-12 76.6 54 75.9
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 2.3e-12 76.3 54 75.9
HanXRQChr13g0389471 Helianthus annuus HOM05D002864 ORTHO05D008485 2.3e-12 76.3 54 75.9
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 2.3e-12 76.3 54 75.9
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 2.3e-12 76.3 54 75.9
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 2.3e-12 76.3 54 75.9
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 5.1e-12 75.1 52 76.9
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 6.7e-12 74.7 54 72.2
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 6.7e-12 74.7 54 72.2
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 6.7e-12 74.7 54 72.2
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 8.7e-12 74.3 54 74.1
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 8.7e-12 74.3 54 74.1
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 8.7e-12 74.3 56 71.4
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 1.9e-11 73.2 53 69.8
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 7.4e-11 71.2 54 72.2
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 7.4e-11 71.2 48 75.0
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 2.1e-10 69.7 54 70.4
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 6.2e-10 68.2 54 68.5
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 1.1e-09 67.4 53 69.8
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 1.8e-09 66.6 102 48.0
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 3.1e-09 65.9 53 67.9
arahy.Tifrunner.gnm1.ann1.G1F49J Arachis hypogaea HOM05D002864 ORTHO05D008485 5.3e-09 65.1 42 73.8
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 4.5e-08 62.0 54 68.5
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 4.5e-08 62.0 54 68.5
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 4.5e-08 62.0 54 68.5
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 4.5e-08 62.0 54 68.5
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 2.9e-07 59.3 54 66.7
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 4.9e-07 58.5 54 64.8
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 1.4e-06 57.0 52 59.6
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 3.2e-06 55.8 40 72.5
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 9.3e-06 54.3 54 63.0


User provided reference genes

Program Settings