Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 1.8e-100 369.4 205 100.0
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 3.9e-87 325.1 205 87.3
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 3.6e-85 318.5 206 89.8
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 1.9e-57 226.5 153 89.5
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.0e-51 206.5 216 62.0
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.0e-51 206.5 213 61.5
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 2.0e-51 206.5 209 63.2
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 2.6e-51 206.1 215 61.9
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 1.0e-50 204.1 209 62.7
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.3e-50 203.8 214 62.1
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 2.2e-50 203.0 217 61.3
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 5.0e-50 201.8 217 60.8
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 5.0e-50 201.8 203 63.1
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 6.5e-50 201.4 209 63.2
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 1.4e-49 200.3 209 60.8
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 2.5e-49 199.5 165 71.5
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 3.2e-49 199.1 214 60.3
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 6.1e-48 194.9 207 59.4
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 7.9e-48 194.5 205 63.4
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 2.3e-47 193.0 204 60.3
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 3.0e-47 192.6 211 59.2
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 3.9e-47 192.2 165 67.3
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 5.1e-47 191.8 210 60.0
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 5.1e-47 191.8 206 59.7
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 6.7e-47 191.4 210 58.1
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 8.8e-47 191.0 210 57.6
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 2.0e-46 189.9 210 58.6
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 2.0e-46 189.9 212 56.6
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 3.3e-46 189.1 201 57.7
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 3.3e-46 189.1 206 59.2
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 3.3e-46 189.1 211 55.9
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 3.3e-46 189.1 200 61.5
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 2.2e-45 186.4 163 65.0
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 2.8e-45 186.0 198 58.6
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 2.8e-45 186.0 213 56.8
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 6.3e-45 184.9 206 58.3
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 6.3e-45 184.9 211 58.8
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 1.4e-44 183.7 202 61.4
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 1.8e-44 183.3 213 55.9
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 2.4e-44 183.0 217 54.8
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 3.1e-44 182.6 211 57.3
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 3.1e-44 182.6 166 65.1
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 5.3e-44 181.8 168 67.9
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 9.1e-44 181.0 210 57.6
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.2e-43 180.6 214 55.1
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 1.5e-43 180.3 150 73.3
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 2.6e-43 179.5 205 53.7
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 3.4e-43 179.1 151 70.9
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 1.3e-42 177.2 201 59.7
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.7e-42 176.8 205 58.0
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 8.5e-42 174.5 168 66.1
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.1e-41 174.1 205 58.0
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 1.4e-41 173.7 215 56.3
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 1.9e-41 173.3 212 55.2
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 2.5e-41 172.9 216 56.5
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 5.5e-41 171.8 166 57.8
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 7.2e-41 171.4 168 63.7
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 9.4e-41 171.0 166 62.0
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 9.4e-41 171.0 196 57.1
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 1.6e-40 170.2 165 63.6
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 4.7e-40 168.7 195 59.0
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 1.0e-39 167.5 171 63.7
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.0e-39 167.5 169 62.1
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 1.4e-39 167.2 211 54.5
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 3.9e-39 165.6 202 56.9
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 5.2e-39 165.2 203 56.7
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 8.8e-39 164.5 196 56.6
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 1.5e-38 163.7 139 69.8
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 1.5e-38 163.7 162 61.7
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 1.7e-37 160.2 196 55.1
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 2.8e-37 159.5 165 59.4
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 8.2e-37 157.9 164 55.5
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.8e-36 156.8 205 51.7
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 1.8e-36 156.8 111 70.3
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 7.0e-36 154.8 203 54.7
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 2.0e-35 153.3 168 51.8
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 5.9e-35 151.8 190 54.2
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 5.9e-35 151.8 191 55.5
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 2.9e-34 149.4 247 45.3
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 4.2e-33 145.6 227 47.6
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 9.4e-33 144.4 186 51.6
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 6.7e-31 138.3 99 67.7
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 2.0e-30 136.7 165 57.6
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 3.3e-30 136.0 99 68.7
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 7.5e-30 134.8 201 48.3
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 4.8e-29 132.1 287 40.8
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 8.2e-29 131.3 172 59.9
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 4.2e-25 119.0 91 80.2
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 5.5e-25 118.6 98 73.5
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 3.6e-24 115.9 162 53.7
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 1.8e-23 113.6 92 62.0
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 1.8e-23 113.6 95 57.9
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 5.2e-23 112.1 75 70.7
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.5e-22 110.5 200 41.5
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 5.7e-22 108.6 105 66.7
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 6.3e-21 105.1 61 88.5
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 3.1e-20 102.8 91 58.2
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 5.4e-20 102.1 111 54.1
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 5.4e-20 102.1 91 58.2
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 5.4e-20 102.1 91 58.2
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 1.6e-19 100.5 181 46.4
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 2.0e-19 100.1 113 49.6
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 2.7e-19 99.8 93 55.9
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 3.5e-19 99.4 89 53.9
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.0e-18 97.8 87 57.5
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 2.3e-18 96.7 89 53.9
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 2.3e-18 96.7 117 45.3
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 2.3e-18 96.7 91 51.6
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 3.8e-18 95.9 110 49.1
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 3.8e-18 95.9 136 50.7
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 5.0e-18 95.5 116 48.3
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 6.5e-18 95.1 89 52.8
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 6.5e-18 95.1 115 43.5
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.1e-17 94.4 87 54.0
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 1.1e-17 94.4 87 54.0
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.5e-17 94.0 111 45.9
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 1.5e-17 94.0 91 54.9
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 2.5e-17 93.2 161 36.0
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 3.2e-17 92.8 96 49.0
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 3.2e-17 92.8 89 52.8
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 5.5e-17 92.0 183 37.7
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 5.5e-17 92.0 85 54.1
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 5.5e-17 92.0 96 50.0
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 1.6e-16 90.5 87 49.4
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 2.1e-16 90.1 113 41.6
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 2.1e-16 90.1 109 42.2
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 2.8e-16 89.7 92 47.8
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 6.1e-16 88.6 87 51.7
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 8.0e-16 88.2 87 50.6
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 1.0e-15 87.8 88 52.3
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 1.0e-15 87.8 91 49.5
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 1.0e-15 87.8 60 68.3
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.4e-15 87.4 87 51.7
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 1.8e-15 87.0 86 52.3
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 1.8e-15 87.0 88 51.1
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 3.0e-15 86.3 161 37.3
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 3.0e-15 86.3 161 37.3
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 3.0e-15 86.3 152 42.8
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 4.0e-15 85.9 88 51.1
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 4.0e-15 85.9 87 49.4
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 5.2e-15 85.5 173 37.6
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 8.8e-15 84.7 87 48.3
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.2e-14 84.3 174 40.2
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 1.5e-14 84.0 186 40.3
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.5e-14 84.0 133 40.6
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 2.0e-14 83.6 87 48.3
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 2.0e-14 83.6 148 42.6
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 2.6e-14 83.2 89 47.2
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 5.7e-14 82.0 87 47.1
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 9.8e-14 81.3 144 34.0
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.3e-13 80.9 96 44.8
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 2.2e-13 80.1 143 49.0
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 2.8e-13 79.7 138 51.4
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 1.8e-12 77.0 74 55.4
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 4.5e-11 72.4 97 56.7
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 5.9e-11 72.0 80 38.8
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 2.3e-10 70.1 97 55.7
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 1.1e-09 67.8 87 43.7
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 1.1e-09 67.8 156 36.5
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 9.5e-09 64.7 50 64.0
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 2.3e-07 60.1 53 60.4
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 4.0e-07 59.3 63 55.6
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.2e-06 57.8 91 37.4
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 7.5e-06 55.1 52 55.8


User provided reference genes

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