Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 5.8e-264 913.7 462 100.0
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 9.9e-248 859.8 462 94.8
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 4.2e-246 854.4 462 94.6
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 5.1e-212 741.1 451 85.1
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 1.7e-191 672.9 448 75.7
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 2.2e-183 646.0 442 73.8
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 2.9e-183 645.6 444 74.3
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 3.2e-182 642.1 445 73.3
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 4.2e-182 641.7 451 73.4
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 2.7e-181 639.0 447 71.1
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 6.1e-181 637.9 445 72.1
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.3e-180 636.0 442 71.9
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 3.0e-180 635.6 461 70.7
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 6.8e-180 634.4 445 72.8
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 1.5e-179 633.3 456 71.5
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.0e-179 632.9 442 71.7
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 4.4e-179 631.7 451 71.6
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.3e-178 630.2 451 71.4
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 3.7e-178 628.6 445 71.9
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 8.3e-178 627.5 445 71.9
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 1.8e-177 626.3 445 72.4
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 7.0e-177 624.4 450 72.0
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 7.0e-177 624.4 445 71.2
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 9.1e-177 624.0 447 70.7
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.6e-176 623.2 449 71.0
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 2.0e-176 622.9 471 67.9
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.7e-176 622.5 451 70.5
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 2.7e-176 622.5 441 70.7
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 1.3e-175 620.2 443 70.7
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 1.5e-174 616.7 450 71.3
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 3.2e-174 615.5 445 69.9
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 4.2e-174 615.1 449 69.7
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 1.6e-173 613.2 420 74.0
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 6.1e-173 611.3 445 69.9
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 1.8e-172 609.8 445 69.7
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 4.0e-172 608.6 445 69.0
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 7.5e-171 604.4 445 69.7
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 2.4e-169 599.4 444 67.6
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 2.4e-169 599.4 439 68.1
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 4.1e-169 598.6 442 68.1
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 1.2e-168 597.0 445 67.2
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 1.0e-167 594.0 452 67.9
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 1.7e-167 593.2 473 66.2
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 3.3e-166 589.0 448 67.9
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 3.3e-166 589.0 448 67.9
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 1.6e-165 586.6 442 65.8
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.1e-165 586.3 449 67.7
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 6.1e-165 584.7 446 68.2
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.4e-164 583.6 413 72.9
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.4e-164 583.6 413 72.9
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 1.4e-164 583.6 439 67.4
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 1.8e-164 583.2 444 65.3
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 2.3e-164 582.8 444 64.9
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 2.3e-164 582.8 444 65.3
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 6.8e-164 581.3 464 65.1
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.2e-163 580.5 465 65.2
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.5e-163 580.1 441 66.7
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 3.4e-163 578.9 460 64.6
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 3.4e-163 578.9 441 66.4
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 7.5e-163 577.8 412 70.9
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 5.0e-159 565.1 402 71.9
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 5.6e-158 561.6 402 71.4
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 2.1e-157 559.7 459 63.2
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 6.2e-157 558.1 446 65.2
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 5.4e-153 545.0 451 63.4
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 9.2e-153 544.3 415 67.2
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 7.8e-152 541.2 443 61.4
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 1.7e-151 540.0 443 61.9
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 6.6e-151 538.1 443 61.6
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 3.3e-150 535.8 467 58.0
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 1.6e-149 533.5 446 61.9
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 1.6e-149 533.5 457 61.3
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.1e-148 530.8 450 61.1
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 5.2e-148 528.5 448 59.4
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 3.4e-147 525.8 448 59.6
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 9.8e-147 524.2 462 58.2
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 1.3e-146 523.9 456 62.1
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 2.2e-146 523.1 468 57.7
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 2.2e-146 523.1 464 57.8
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 2.9e-146 522.7 469 57.6
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 3.2e-145 519.2 452 58.2
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 6.0e-144 515.0 462 57.1
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 7.8e-144 514.6 393 66.9
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 1.7e-143 513.5 441 61.2
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 1.7e-143 513.5 441 61.7
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 6.6e-143 511.5 449 59.9
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 6.6e-143 511.5 428 63.6
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 1.1e-142 510.8 462 56.9
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.1e-142 510.8 446 63.0
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 2.5e-142 509.6 455 58.9
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.2e-141 507.3 394 64.7
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 1.6e-141 506.9 450 57.1
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 1.6e-141 506.9 406 64.5
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 6.2e-141 505.0 406 64.3
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 3.1e-140 502.7 450 58.4
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 8.4e-138 494.6 395 63.0
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 1.9e-137 493.4 389 64.0
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 4.1e-137 492.3 420 59.8
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.6e-136 490.3 452 57.3
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 2.7e-136 489.6 453 58.7
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.7e-135 486.9 360 68.3
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.1e-135 485.3 446 60.1
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 8.6e-135 484.6 445 57.1
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.5e-134 483.8 395 66.3
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 3.3e-134 482.6 405 61.2
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 8.4e-130 468.0 384 65.6
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.9e-129 466.8 477 54.9
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.4e-129 466.5 444 54.5
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 3.2e-129 466.1 445 54.6
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.7e-128 463.0 319 71.5
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 2.7e-128 463.0 431 54.8
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.5e-126 457.2 447 55.9
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 2.9e-122 443.0 312 71.8
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 9.3e-121 438.0 445 54.4
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.9e-116 421.8 347 61.7
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 3.4e-115 419.5 364 58.2
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.7e-114 417.2 397 55.7
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 2.2e-114 416.8 454 52.4
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 7.9e-112 408.3 447 51.7
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 9.0e-100 368.2 334 58.1
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 3.9e-95 352.8 292 64.0
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 2.8e-93 346.7 449 47.0
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 6.9e-92 342.0 290 59.0
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 2.9e-90 336.7 290 59.3
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 3.8e-90 336.3 290 58.3
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 5.5e-89 332.4 296 56.4
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 2.6e-86 323.6 363 49.0
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 1.5e-83 314.3 300 53.7
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.6e-83 313.5 290 54.8
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 1.0e-82 311.6 242 64.0
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.3e-77 294.7 341 45.5
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 1.2e-75 288.1 157 94.9
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.5e-73 280.4 177 81.9
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 7.2e-73 278.9 157 90.4
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 9.4e-73 278.5 156 90.4
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 1.5e-70 271.2 155 89.0
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 5.3e-68 262.7 382 41.1
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 1.6e-67 261.2 175 69.7
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 4.5e-67 259.6 156 84.0
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 5.9e-67 259.2 145 89.7
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.5e-65 254.6 204 59.8
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 5.2e-63 246.1 519 36.4
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 3.5e-59 233.4 141 82.3
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 2.9e-58 230.3 133 89.5
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 1.9e-57 227.6 296 44.3
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 9.5e-57 225.3 184 65.2
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 5.7e-54 216.1 182 62.1
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 4.1e-52 209.9 122 84.4
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 1.2e-48 198.4 132 81.8
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.6e-48 198.0 242 45.0
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 5.7e-46 189.5 494 31.8
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 1.4e-44 184.9 166 56.6
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 8.6e-42 175.6 99 91.9
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 1.9e-41 174.5 106 84.9
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 1.9e-41 174.5 178 57.3
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.9e-37 160.6 314 36.9
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.4e-36 158.3 140 58.6
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 2.7e-35 154.1 121 65.3
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 9.9e-30 135.6 146 52.7
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 3.6e-24 117.1 215 36.7
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 3.1e-23 114.0 68 86.8
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 8.4e-21 105.9 103 52.4
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 4.1e-20 103.6 58 91.4
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 3.9e-18 97.1 56 91.1
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 6.2e-16 89.7 257 29.6
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 1.4e-12 78.6 57 68.4
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 2.5e-09 67.8 68 47.1
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 1.6e-08 65.1 75 49.3
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.5e-06 57.0 65 47.7


User provided reference genes

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