Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 5.3e-61 237.7 133 100.0
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 9.7e-31 137.1 129 69.0
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 9.7e-31 137.1 129 69.0
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 2.4e-29 132.5 129 66.7
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 5.0e-27 124.8 129 63.6
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 3.2e-26 122.1 149 56.4
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 9.4e-26 120.6 79 86.1
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 1.6e-25 119.8 129 61.2
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 2.7e-25 119.0 129 60.5
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 3.6e-25 118.6 129 59.7
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 3.6e-25 118.6 129 59.7
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 3.6e-25 118.6 129 59.7
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 3.6e-25 118.6 129 59.7
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 6.1e-25 117.9 129 59.7
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 8.0e-25 117.5 129 59.7
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 8.0e-25 117.5 129 59.7
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 8.0e-25 117.5 129 60.5
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 1.0e-24 117.1 129 58.9
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 1.8e-24 116.3 129 59.7
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 2.3e-24 115.9 129 59.7
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 3.0e-24 115.5 82 79.3
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 4.0e-24 115.2 79 79.7
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 4.0e-24 115.2 79 81.0
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 5.2e-24 114.8 130 60.8
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 5.2e-24 114.8 129 58.1
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 5.2e-24 114.8 129 58.9
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 5.2e-24 114.8 129 60.5
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 6.8e-24 114.4 129 58.1
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 6.8e-24 114.4 127 59.8
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 8.8e-24 114.0 79 79.7
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 1.5e-23 113.2 104 64.4
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.5e-23 113.2 132 59.8
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 1.5e-23 113.2 129 56.6
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 1.5e-23 113.2 129 58.1
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 2.0e-23 112.8 128 59.4
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 2.0e-23 112.8 105 63.8
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 2.0e-23 112.8 131 59.5
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 2.6e-23 112.5 79 78.5
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 3.4e-23 112.1 130 58.5
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 3.4e-23 112.1 129 57.4
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 5.7e-23 111.3 82 78.0
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 5.7e-23 111.3 82 78.0
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 7.5e-23 110.9 83 77.1
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 7.5e-23 110.9 90 72.2
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 7.5e-23 110.9 77 79.2
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 1.3e-22 110.2 83 75.9
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 1.3e-22 110.2 82 76.8
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 1.3e-22 110.2 82 76.8
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 2.2e-22 109.4 77 80.5
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 2.2e-22 109.4 79 77.2
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 2.2e-22 109.4 133 57.1
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 2.8e-22 109.0 82 75.6
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 2.8e-22 109.0 82 76.8
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 2.8e-22 109.0 82 75.6
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 2.8e-22 109.0 133 55.6
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 2.8e-22 109.0 129 57.4
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 2.8e-22 109.0 83 75.9
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 3.7e-22 108.6 83 75.9
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 3.7e-22 108.6 82 76.8
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 3.7e-22 108.6 82 75.6
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 3.7e-22 108.6 133 57.1
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 4.8e-22 108.2 130 57.7
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 6.3e-22 107.8 80 76.2
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 6.3e-22 107.8 127 57.5
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 6.3e-22 107.8 130 57.7
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 8.3e-22 107.5 80 76.2
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 1.1e-21 107.1 80 76.2
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 1.1e-21 107.1 80 76.2
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 1.8e-21 106.3 129 53.5
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 1.8e-21 106.3 129 53.5
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 3.1e-21 105.5 150 52.0
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 3.1e-21 105.5 133 53.4
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 5.4e-21 104.8 80 76.2
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 9.1e-21 104.0 129 56.6
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 1.6e-20 103.2 129 55.0
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 1.6e-20 103.2 129 56.6
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 7.7e-20 100.9 113 58.4
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 1.0e-19 100.5 116 57.8
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 1.9e-18 96.3 167 45.5
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 4.2e-18 95.1 77 71.4
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 5.5e-18 94.7 116 56.0
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 5.5e-18 94.7 116 56.0
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 1.2e-17 93.6 116 55.2
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.2e-17 93.6 130 53.8
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 1.2e-17 93.6 116 55.2
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 1.6e-17 93.2 116 54.3
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 1.6e-17 93.2 129 52.7
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 4.7e-17 91.7 83 68.7
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 4.7e-17 91.7 119 55.5
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 6.1e-17 91.3 150 47.3
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 8.0e-17 90.9 117 55.6
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 8.0e-17 90.9 128 51.6
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 1.0e-16 90.5 116 53.4
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 1.8e-16 89.7 129 49.6
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 4.0e-16 88.6 130 52.3
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 3.4e-15 85.5 77 67.5
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 3.4e-15 85.5 129 52.7
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 1.7e-14 83.2 59 79.7
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 2.2e-14 82.8 83 65.1
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 3.7e-14 82.0 64 76.6
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 6.3e-14 81.3 116 51.7
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 8.3e-14 80.9 112 50.9
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 8.3e-14 80.9 57 78.9
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 1.4e-13 80.1 129 47.3
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 2.4e-13 79.3 152 43.4
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 7.0e-13 77.8 82 62.2
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 1.6e-12 76.6 62 69.4
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.7e-12 75.9 130 48.5
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.7e-12 75.9 130 48.5
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 2.7e-12 75.9 132 47.7
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 2.7e-12 75.9 59 72.9
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 4.5e-12 75.1 112 50.9
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 5.9e-12 74.7 61 70.5
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 5.0e-11 71.6 127 44.1
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 1.1e-10 70.5 116 48.3
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 3.3e-10 68.9 132 46.2
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 7.3e-10 67.8 77 57.1
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 9.5e-10 67.4 46 80.4
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 9.5e-10 67.4 132 45.5
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 1.2e-09 67.0 66 63.6
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 1.4e-08 63.5 39 87.2
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 3.1e-08 62.4 129 41.9
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.2e-07 60.5 132 43.2
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.5e-07 60.1 48 77.1
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 2.6e-07 59.3 94 47.9
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 5.8e-07 58.2 119 44.5
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 1.3e-06 57.0 84 50.0
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 1.7e-06 56.6 131 40.5
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 2.9e-06 55.8 78 51.3
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 3.7e-06 55.5 70 50.0


User provided reference genes

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