Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G020760 Citrullus lanatus HOM05D007700 ORTHO05D009669 1.4e-140 503.8 261 100.0
MELO3C007960.2 Cucumis melo HOM05D007700 ORTHO05D009669 1.3e-122 444.1 261 88.9
CsaV3_6G047710 Cucumis sativus L. HOM05D007700 ORTHO05D009669 1.3e-114 417.5 262 84.0
Sed0015131 Sechium edule HOM05D000242 ORTHO05D009669 2.2e-90 337.0 261 69.7
Thecc.01G008500 Theobroma cacao HOM05D007700 ORTHO05D009669 5.4e-76 289.3 257 59.5
CANSAT25G3310 Cannabis sativa HOM05D007700 ORTHO05D009669 9.1e-76 288.5 268 58.2
QL06p052538 Quercus lobata HOM05D007700 ORTHO05D009669 1.6e-72 277.7 276 57.6
Eucgr.I02272 Eucalyptus grandis HOM05D007700 ORTHO05D009669 3.6e-72 276.6 273 54.2
AL3G50640 Arabidopsis lyrata HOM05D007700 ORTHO05D009669 3.7e-69 266.5 262 53.4
AT2G17670 Arabidopsis thaliana HOM05D007700 ORTHO05D009669 3.7e-69 266.5 261 53.3
Gohir.D03G003800 Gossypium hirsutum HOM05D007700 ORTHO05D009669 4.9e-69 266.2 260 57.3
Aa31LG8G14930 Aethionema arabicum HOM05D007700 ORTHO05D009669 8.3e-69 265.4 261 52.9
Gorai.003G004000 Gossypium raimondii HOM05D007700 ORTHO05D009669 1.8e-68 264.2 264 56.4
Thhalv10022683m.g Eutrema salsugineum HOM05D007700 ORTHO05D009669 4.1e-68 263.1 264 53.4
Lj3g0022870 Lotus japonicus HOM05D007700 ORTHO05D009669 1.6e-67 261.2 265 54.3
Atru.chr3.942 Acer truncatum HOM05D007700 ORTHO05D009669 1.0e-66 258.5 270 53.3
arahy.Tifrunner.gnm1.ann1.PXC5PH Arachis hypogaea HOM05D007700 ORTHO05D009669 2.9e-66 256.9 273 55.7
Sp3g31020 Schrenkiella parvula HOM05D007700 ORTHO05D009669 3.8e-66 256.5 264 52.7
Cfa007052 Carpinus fangiana HOM05D007700 ORTHO05D009669 8.6e-66 255.4 273 55.3
Actinidia22918 Actinidia chinensis HOM05D007700 ORTHO05D009669 2.5e-65 253.8 269 54.6
Nn6g31772 Nelumbo nucifera HOM05D007700 ORTHO05D009669 2.5e-65 253.8 276 51.4
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 3.3e-65 253.4 271 55.7
CiPaw.07G004600 Carya illinoinensis HOM05D007700 ORTHO05D009669 4.3e-65 253.1 267 55.4
arahy.Tifrunner.gnm1.ann1.HE2L98 Arachis hypogaea HOM05D007700 ORTHO05D009669 9.5e-65 251.9 273 55.3
Potri.005G103300 Populus trichocarpa HOM05D007700 ORTHO05D009669 1.6e-64 251.1 264 55.7
BolC9t54240H Brassica oleracea HOM05D007700 ORTHO05D009669 3.6e-64 250.0 261 51.3
C09p13500 Brassica napus HOM05D007700 ORTHO05D009669 4.7e-64 249.6 261 51.0
Manes.01G153300 Manihot esculenta HOM05D007700 ORTHO05D009669 1.4e-63 248.1 270 55.9
Sabra05G0085500 Salix brachista HOM05D007700 ORTHO05D009669 6.8e-63 245.7 264 54.2
BraA09t36788Z Brassica rapa HOM05D007700 ORTHO05D009669 8.9e-63 245.4 265 49.4
Rhsim10G0201800 Rhododendron simsii HOM05D000242 ORTHO05D009669 1.2e-62 245.0 212 59.0
THA.LOC104804288 Tarenaya hassleriana HOM05D007700 ORTHO05D009669 1.5e-62 244.6 263 49.4
VMungo0331G0753 Vigna mungo HOM05D007700 ORTHO05D009669 3.4e-62 243.4 267 53.2
A09p11480 Brassica napus HOM05D007700 ORTHO05D009669 5.7e-62 242.7 268 48.5
Rhsim10G0203000 Rhododendron simsii HOM05D000242 ORTHO05D009669 1.3e-61 241.5 208 59.6
Sopen02g027760 Solanum pennellii HOM05D007700 ORTHO05D009669 2.9e-61 240.4 268 53.0
Ca_23118_v3 Cicer arietinum L. HOM05D007700 ORTHO05D009669 3.7e-61 240.0 264 50.8
PGSC0003DMG400040241 Solanum tuberosum HOM05D007700 ORTHO05D009669 6.4e-61 239.2 267 52.8
BcaB07g31715 Brassica carinata HOM05D007700 ORTHO05D009669 1.1e-60 238.4 266 49.2
TPR.G28737 Trifolium pratense HOM05D007700 ORTHO05D009669 1.8e-60 237.7 266 52.6
vmacro20514 Vaccinium macrocarpon HOM05D007700 ORTHO05D009669 1.2e-59 235.0 207 58.5
Psat4g208920 Pisum sativum HOM05D007700 ORTHO05D009669 2.7e-59 233.8 271 51.3
Cc00_g14260 Coffea canephora HOM05D007700 ORTHO05D009669 4.6e-59 233.0 270 51.9
Glyma.07G109000 Glycine max HOM05D007700 ORTHO05D009669 1.0e-58 231.9 264 52.3
Dinv40165 Davidia involucrata HOM05D007700 ORTHO05D009669 1.5e-57 228.0 274 48.9
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 3.3e-57 226.9 268 51.1
Lj2P490T20 Lonicera japonica HOM05D007700 ORTHO05D009669 1.2e-56 224.9 265 49.8
Prupe.7G178400 Prunus persica HOM05D007700 ORTHO05D009669 6.2e-56 222.6 270 48.9
TAR625G0909 Trochodendron aralioides HOM05D007700 ORTHO05D009669 1.8e-55 221.1 273 49.1
Ciclev10025555m.g Citrus clementina HOM05D007700 ORTHO05D009669 8.3e-53 212.2 263 47.1
DCAR_023138 Daucus carota HOM05D007700 ORTHO05D009669 1.1e-52 211.8 176 61.4
Solyc02g082970.1 Solanum lycopersicum HOM05D007700 ORTHO05D009669 5.4e-52 209.5 278 46.0
Carub.0003s3177 Capsella rubella HOM05D007700 ORTHO05D009669 7.8e-51 205.7 228 46.9
PGR119G0746 Punica granatum HOM05D007700 ORTHO05D009669 1.9e-49 201.1 266 46.2
HanXRQChr07g0192051 Helianthus annuus HOM05D007700 ORTHO05D009669 2.5e-49 200.7 270 47.0
Dinv08534 Davidia involucrata HOM05D007700 ORTHO05D009669 9.5e-49 198.7 152 63.8
Phvul.010G056500 Phaseolus vulgaris HOM05D007700 ORTHO05D009669 4.7e-48 196.4 269 45.4
MBI05_g43154_MAGBIO Magnolia biondii HOM05D007700 ORTHO05D009669 2.3e-47 194.1 265 43.0
MD02G1120600 Malus domestica HOM05D007700 ORTHO05D009669 2.2e-45 187.6 271 43.5
CARHR107900 Cardamine hirsuta HOM05D007700 ORTHO05D009669 4.9e-45 186.4 224 47.3
Gohir.A02G176100 Gossypium hirsutum HOM05D007700 ORTHO05D009669 6.4e-45 186.0 146 64.4
COL.COLO4_22522 Corchorus olitorius HOM05D007700 ORTHO05D009669 2.1e-43 181.0 236 45.8
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 7.8e-43 179.1 242 42.1
FvH4_1g10671 Fragaria vesca HOM05D007700 ORTHO05D009669 6.6e-42 176.0 188 52.1
FAN23G0395 Fragaria x ananassa HOM05D007700 ORTHO05D009669 8.6e-42 175.6 188 51.6
Lsat_1_v5_gn_2_74520 Lactuca sativa HOM05D007700 ORTHO05D009669 9.5e-41 172.2 244 42.2
SalBow7G3569 Salvia bowleyana HOM05D007700 ORTHO05D009669 3.8e-37 160.2 232 40.5
HPP92_025432 Vanilla planifolia HOM05D007700 ORTHO05D009669 4.9e-37 159.8 284 39.4
Migut.C00922 Erythranthe guttata HOM05D007700 ORTHO05D009669 3.2e-36 157.1 238 41.2
Peaxi162Scf01310g10029 Petunia axillaris HOM05D007700 ORTHO05D009669 4.1e-36 156.8 265 40.4
Lalb_Chr03g0039951 Lupinus albus HOM05D007700 ORTHO05D009669 5.4e-36 156.4 276 42.4
SGA_v2.0_scaffold275G46573 Striga asiatica HOM05D007700 ORTHO05D009669 1.2e-35 155.2 235 42.6
TWI73G0108 Tripterygium wilfordii HOM05D007700 ORTHO05D009669 3.5e-35 153.7 201 47.8
CAN.G890.59 Capsicum annuum HOM05D007700 ORTHO05D009669 1.3e-34 151.8 151 51.0
Nitab4.5_0001581g0090 Nicotiana tabacum HOM05D007700 ORTHO05D009669 1.2e-32 145.2 151 49.0
Nitab4.5_0003207g0040 Nicotiana tabacum HOM05D007700 ORTHO05D009669 2.1e-32 144.4 151 49.0
BcaC04g22956 Brassica carinata HOM05D007700 ORTHO05D009669 3.1e-31 140.6 112 60.7
EL10Ac6g13369 Beta vulgaris HOM05D007700 ORTHO05D009669 5.8e-30 136.3 212 42.9
AUR62041102 Chenopodium quinoa HOM05D007700 ORTHO05D009669 2.2e-29 134.4 192 43.2
AUR62026170 Chenopodium quinoa HOM05D007700 ORTHO05D009669 1.1e-28 132.1 192 42.7
Aqoxy6G01792 Aquilegia oxysepala HOM05D007700 ORTHO05D009669 3.0e-26 124.0 212 38.7
Sc03g0003890 Simmondsia chinensis HOM05D007700 ORTHO05D009669 2.5e-25 120.9 189 40.2
Actinidia17391 Actinidia chinensis HOM05D000192 ORTHO05D000123 1.3e-24 118.6 112 57.1
MSTRG.1126 Avicennia marina HOM05D007700 ORTHO05D009669 1.3e-24 118.6 226 37.6
ATR0661G421 Amborella trichopoda HOM05D007700 ORTHO05D009669 2.8e-24 117.5 123 53.7
Glyma.03G117900 Glycine max HOM05D007700 ORTHO05D009669 4.8e-24 116.7 267 37.1
Ah.03g134060 Amaranthus hybridus HOM05D007700 ORTHO05D009669 1.8e-23 114.8 201 37.8
SHI08474 Sapria himalayana HOM05D007700 ORTHO05D009669 4.5e-22 110.2 106 47.2
CDE05G1645 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 8.1e-16 89.4 80 50.0
ATR0739G057 Amborella trichopoda HOM05D007700 ORTHO05D009669 3.1e-15 87.4 237 30.8
Glyma.12G208100 Glycine max HOM05D007320 ORTHO05D009290 9.6e-09 65.9 183 27.3
ATR0580G328 Amborella trichopoda HOM05D000424 ORTHO05D000355 2.1e-08 64.7 222 27.5
CiPaw.01G157600 Carya illinoinensis HOM05D007340 ORTHO05D008979 3.7e-08 63.9 179 26.8
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 6.2e-08 63.2 122 28.7
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 8.2e-08 62.8 122 28.7
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 1.1e-07 62.4 125 30.4
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 1.4e-07 62.0 135 29.6
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 1.8e-07 61.6 135 29.6
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 3.1e-07 60.8 189 25.9
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 4.0e-07 60.5 122 28.7
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 4.0e-07 60.5 136 25.0
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 5.3e-07 60.1 135 28.1
SalBow3G4038 Salvia bowleyana HOM05D000162 ORTHO05D000090 5.3e-07 60.1 201 25.9
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 5.3e-07 60.1 128 29.7
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 6.9e-07 59.7 135 29.6
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 9.0e-07 59.3 189 25.4
Carub.0005s2821 Capsella rubella HOM05D003900 ORTHO05D005009 9.0e-07 59.3 152 22.4
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 9.0e-07 59.3 137 34.3
Medtr8g463610 Medicago truncatula HOM05D006503 ORTHO05D008116 9.0e-07 59.3 130 26.2
Nitab4.5_0008210g0010 Nicotiana tabacum HOM05D007320 ORTHO05D009290 9.0e-07 59.3 135 28.1
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 9.0e-07 59.3 126 27.0
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 1.5e-06 58.5 115 25.2
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 1.5e-06 58.5 122 27.9
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 1.5e-06 58.5 120 27.5
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 1.5e-06 58.5 122 28.7
Cpa.g.sc13.131 Carica papaya HOM05D007402 ORTHO05D003673 2.0e-06 58.2 219 23.3
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 2.6e-06 57.8 152 23.0
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 4.5e-06 57.0 119 26.1
Nitab4.5_0006134g0060 Nicotiana tabacum HOM05D000424 ORTHO05D000355 4.5e-06 57.0 170 22.4
Peaxi162Scf00454g00034 Petunia axillaris HOM05D007402 ORTHO05D003673 4.5e-06 57.0 211 23.7
HPP92_011880 Vanilla planifolia HOM05D000424 ORTHO05D000355 4.5e-06 57.0 165 29.1
GSVIVG01021583001 Vitis vinifera HOM05D006556 ORTHO05D008146 4.5e-06 57.0 112 26.8
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 5.8e-06 56.6 125 30.4
Lj2C43T6 Lonicera japonica HOM05D017878 ORTHO05D018225 5.8e-06 56.6 96 31.2
Oeu024268.1 Olea europaea HOM05D000104 ORTHO05D009920 5.8e-06 56.6 196 27.0
Rhsim02G0072100 Rhododendron simsii HOM05D007128 ORTHO05D009059 5.8e-06 56.6 142 26.8
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 5.8e-06 56.6 200 24.0
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 7.6e-06 56.2 260 26.2
Thecc.04G270900 Theobroma cacao HOM05D007340 ORTHO05D008979 7.6e-06 56.2 152 28.3
Glyma.01G073500 Glycine max HOM05D000104 ORTHO05D009920 1.0e-05 55.8 180 23.9
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 1.0e-05 55.8 94 28.7
Medtr5g088510 Medicago truncatula HOM05D004783 ORTHO05D005581 1.0e-05 55.8 194 22.7


User provided reference genes

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