Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 0.0e+00 1171.8 623 100.0
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 1.8e-252 875.9 627 77.0
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 9.0e-228 793.9 625 71.7
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 4.7e-184 648.7 482 73.0
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 3.2e-169 599.4 561 60.4
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 8.0e-152 541.6 549 55.0
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 3.4e-150 536.2 555 53.3
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.1e-148 531.2 562 52.5
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 3.9e-146 522.7 532 53.8
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 6.6e-146 521.9 561 52.4
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 7.3e-145 518.5 556 53.2
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 9.5e-145 518.1 550 52.4
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.1e-144 516.9 550 52.4
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.4e-143 514.2 550 52.2
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 4.4e-142 509.2 545 53.2
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.2e-141 506.9 557 50.8
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 3.7e-141 506.1 552 51.3
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 2.4e-140 503.4 552 51.6
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.3e-137 491.9 545 50.8
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 1.2e-136 491.1 551 49.9
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.4e-135 487.6 579 48.2
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 8.9e-135 485.0 531 50.7
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 8.9e-135 485.0 531 50.7
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 2.0e-134 483.8 557 49.9
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 2.6e-134 483.4 555 49.7
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 7.6e-134 481.9 543 51.2
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 2.2e-133 480.3 558 49.6
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.1e-132 478.0 557 49.7
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 7.8e-131 471.9 557 48.8
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.0e-130 471.5 552 50.2
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 2.3e-130 470.3 557 48.3
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 3.3e-129 466.5 540 49.1
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 5.6e-129 465.7 490 51.0
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.1e-128 463.8 567 48.3
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 1.1e-127 461.5 554 47.5
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 1.4e-127 461.1 554 47.7
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.4e-127 461.1 530 50.0
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 1.5e-126 457.6 514 49.8
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.6e-126 456.8 539 48.4
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 2.6e-126 456.8 545 48.3
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 2.4e-124 450.3 534 46.8
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 3.2e-124 449.9 467 52.9
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 3.2e-124 449.9 561 47.8
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 4.2e-124 449.5 566 46.8
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 9.3e-124 448.4 553 46.5
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 1.2e-123 448.0 608 43.4
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 1.0e-122 444.9 601 45.1
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 2.3e-122 443.7 560 46.4
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 3.0e-122 443.4 555 46.1
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 8.7e-122 441.8 599 45.9
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 8.7e-122 441.8 539 47.5
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 7.3e-121 438.7 552 46.9
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.3e-120 438.0 547 48.1
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 6.2e-120 435.6 464 51.3
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 4.0e-119 433.0 562 45.9
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.2e-118 431.4 550 46.2
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 2.0e-118 430.6 550 46.4
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 7.6e-118 428.7 564 45.7
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.7e-117 427.6 553 46.7
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 3.8e-117 426.4 531 47.5
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 6.4e-117 425.6 571 45.7
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 6.4e-117 425.6 599 43.4
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 8.4e-117 425.2 469 49.7
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 9.3e-116 421.8 577 44.5
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 1.2e-115 421.4 547 44.6
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 1.6e-115 421.0 565 44.8
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 6.0e-115 419.1 528 46.8
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.0e-114 418.3 550 45.3
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.8e-114 417.5 477 50.1
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 3.0e-114 416.8 608 42.8
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 3.0e-114 416.8 577 44.0
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 3.3e-113 413.3 555 45.4
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 9.6e-113 411.8 560 44.3
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 6.2e-112 409.1 551 44.5
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 6.9e-111 405.6 537 43.9
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 6.9e-111 405.6 462 50.2
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 7.6e-110 402.1 586 41.6
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 9.9e-110 401.7 569 42.9
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 4.2e-108 396.4 601 42.3
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 9.3e-108 395.2 511 45.2
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 1.9e-105 387.5 580 41.7
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 1.9e-105 387.5 562 42.2
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.1e-103 381.7 543 41.3
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 4.0e-103 379.8 596 40.9
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 1.5e-102 377.9 544 41.9
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 2.6e-102 377.1 549 41.0
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 2.2e-101 374.0 525 44.4
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 3.2e-100 370.2 565 39.8
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 2.1e-99 367.5 383 51.2
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 3.5e-99 366.7 567 39.0
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 1.0e-98 365.2 499 44.1
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.4e-92 344.7 533 39.4
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.4e-92 344.7 494 48.4
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 4.2e-92 343.2 538 39.8
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 2.1e-91 340.9 538 38.7
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 1.3e-90 338.2 527 38.0
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 1.3e-90 338.2 527 38.0
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 1.3e-90 338.2 510 39.0
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 3.0e-90 337.0 527 38.0
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 3.9e-90 336.7 523 38.2
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 6.7e-90 335.9 529 37.8
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 5.7e-89 332.8 473 44.2
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 4.8e-80 303.1 300 56.7
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.1e-79 300.1 545 36.7
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 6.9e-79 299.3 544 35.3
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 5.9e-78 296.2 569 35.5
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 9.4e-76 288.9 544 34.4
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 2.6e-73 280.8 321 51.4
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 7.4e-73 279.3 286 51.0
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 2.8e-72 277.3 525 34.5
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.0e-70 271.2 341 49.6
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 8.5e-69 265.8 325 50.2
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.7e-66 256.1 406 42.9
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 6.3e-64 249.6 568 33.3
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 8.2e-64 249.2 325 46.2
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.5e-62 243.8 172 68.6
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 4.7e-59 233.4 291 48.8
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 2.3e-58 231.1 170 60.6
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 1.2e-51 208.8 399 37.3
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 8.3e-48 196.1 373 35.4
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 6.6e-45 186.4 283 35.7
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 1.2e-43 182.2 144 60.4
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 2.4e-39 167.9 305 33.1
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 5.6e-36 156.8 395 30.4
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 5.6e-36 156.8 322 32.6
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.8e-35 154.5 322 32.0
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.2e-32 144.8 271 34.3
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 7.8e-30 136.3 87 65.5
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 7.8e-30 136.3 87 65.5
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.5e-28 132.1 262 34.7
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 2.1e-27 128.3 132 49.2
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.1e-26 125.9 315 29.8
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.6e-25 121.3 188 43.6
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 9.2e-23 112.8 98 59.2
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.0e-21 107.8 120 53.3
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 1.1e-20 105.9 350 27.1
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-18 97.4 295 26.1
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 1.4e-15 89.0 160 33.1
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 1.4e-15 89.0 160 33.1
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 1.4e-15 89.0 160 33.1
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 4.1e-15 87.4 153 35.9
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 9.2e-15 86.3 160 31.2
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 9.2e-15 86.3 160 31.2
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 9.6e-12 76.3 54 61.1
FAN26G2475 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.4e-07 60.5 71 45.1
FAN19G2927 Fragaria x ananassa HOM05D004947 ORTHO05D006077 9.3e-07 59.7 71 45.1


User provided reference genes

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