Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 5.2e-243 844.0 428 100.0
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 1.9e-213 745.7 426 88.5
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 1.1e-211 740.0 426 88.0
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 1.7e-193 679.5 426 81.9
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 5.0e-169 598.2 419 72.3
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 6.3e-164 581.3 425 71.1
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 1.4e-163 580.1 425 70.6
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 7.0e-163 577.8 418 72.5
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 9.1e-163 577.4 431 69.4
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 2.0e-162 576.2 381 75.1
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 2.6e-162 575.9 413 71.7
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 2.6e-162 575.9 431 68.9
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 4.5e-162 575.1 418 71.5
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 1.0e-161 573.9 411 70.3
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 6.5e-161 571.2 426 68.5
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 6.5e-161 571.2 401 74.3
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 2.5e-160 569.3 417 70.5
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 4.2e-160 568.5 382 73.3
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 4.2e-160 568.5 416 69.7
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.6e-159 566.6 418 71.5
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.6e-159 565.5 418 71.3
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 5.2e-158 561.6 417 68.6
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 1.1e-157 560.5 425 67.5
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 1.5e-157 560.1 433 67.9
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 2.0e-157 559.7 380 73.4
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 8.2e-156 554.3 430 67.7
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 1.1e-155 553.9 381 71.4
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 7.0e-155 551.2 415 68.4
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 9.1e-155 550.8 431 67.3
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 4.5e-154 548.5 420 68.1
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 4.5e-154 548.5 378 70.4
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 5.9e-154 548.1 414 68.8
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 1.0e-153 547.4 403 67.7
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 1.3e-153 547.0 421 67.2
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 2.9e-153 545.8 420 66.9
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 3.8e-153 545.4 366 74.3
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 3.8e-153 545.4 405 69.6
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 3.8e-153 545.4 403 68.0
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 2.5e-152 542.7 421 66.7
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 2.5e-152 542.7 421 66.7
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 4.2e-152 542.0 401 68.3
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 4.2e-152 542.0 393 70.0
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 4.2e-152 542.0 422 66.4
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 5.5e-152 541.6 385 71.4
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 5.5e-152 541.6 400 69.0
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 7.2e-152 541.2 478 60.5
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 3.6e-151 538.9 383 70.2
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 3.6e-151 538.9 378 72.2
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 4.7e-151 538.5 378 70.9
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 4.7e-151 538.5 398 68.3
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 8.0e-151 537.7 407 68.1
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 1.4e-150 537.0 412 66.7
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 1.8e-150 536.6 407 67.3
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 4.0e-150 535.4 400 67.0
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 4.0e-150 535.4 380 68.4
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 5.2e-150 535.0 386 68.7
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 6.7e-150 534.6 409 67.5
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 8.8e-150 534.3 385 68.6
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 8.8e-150 534.3 387 68.7
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 1.5e-149 533.5 425 64.9
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 5.7e-149 531.6 401 67.6
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 1.7e-148 530.0 426 65.0
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 2.2e-148 529.6 446 63.0
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 2.2e-148 529.6 402 67.4
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 3.7e-148 528.9 414 66.7
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 3.7e-148 528.9 377 68.7
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 3.7e-148 528.9 412 66.3
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 4.8e-148 528.5 405 65.2
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 1.8e-147 526.6 421 65.1
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 2.4e-147 526.2 382 69.4
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 7.0e-147 524.6 386 68.7
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 2.7e-146 522.7 423 62.6
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 7.7e-146 521.2 374 70.3
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 7.7e-146 521.2 374 70.3
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.0e-145 520.8 374 69.0
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.7e-145 520.0 389 67.4
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 8.5e-145 517.7 406 64.5
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 1.1e-144 517.3 416 64.4
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 1.9e-144 516.5 386 66.3
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 2.1e-143 513.1 410 64.6
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 4.7e-143 511.9 424 63.0
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 6.1e-143 511.5 384 68.0
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 1.0e-142 510.8 420 64.8
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 2.3e-142 509.6 376 68.9
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 5.2e-142 508.4 397 67.3
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 2.6e-141 506.1 357 70.0
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 1.1e-139 500.7 381 64.8
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 1.4e-139 500.4 402 63.4
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 4.1e-139 498.8 378 68.3
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 2.0e-138 496.5 377 67.6
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 4.5e-138 495.4 377 67.6
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 2.8e-135 486.1 388 62.6
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 7.0e-131 471.5 380 65.0
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 5.9e-130 468.4 374 63.6
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 2.3e-126 456.4 367 63.5
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 3.7e-124 449.1 388 59.0
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 3.2e-123 446.0 432 56.0
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 7.3e-120 434.9 373 61.9
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 9.5e-120 434.5 414 58.5
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 3.0e-113 412.9 393 56.0
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 1.9e-112 410.2 379 56.5
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 3.3e-112 409.5 401 55.1
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 3.6e-111 406.0 372 57.8
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 3.6e-111 406.0 387 57.9
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 3.1e-110 402.9 391 54.5
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 1.3e-108 397.5 382 55.0
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 6.0e-106 388.7 389 53.0
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 1.7e-105 387.1 399 50.6
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 1.1e-102 377.9 378 53.7
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 1.6e-98 364.0 302 64.6
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 1.9e-96 357.1 322 59.9
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 7.6e-93 345.1 279 61.3
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 4.2e-91 339.3 386 49.0
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.6e-87 327.4 223 69.1
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 1.7e-84 317.4 327 52.6
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 5.3e-78 295.8 393 43.3
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 6.4e-76 288.9 176 77.8
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 6.4e-76 288.9 176 77.8
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 1.8e-62 244.2 385 40.5
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 8.5e-52 208.8 170 59.4
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 7.9e-50 202.2 422 36.0
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 2.2e-44 184.1 117 71.8
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 6.3e-39 166.0 138 61.6
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 9.1e-38 162.2 131 64.9
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 5.9e-37 159.5 150 58.7
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 5.0e-36 156.4 399 31.6
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 1.1e-27 128.6 397 30.5
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 2.5e-27 127.5 81 74.1
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 3.3e-11 73.9 69 56.5
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 2.3e-09 67.8 95 42.1
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.0e-08 64.7 73 45.2
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.0e-08 64.7 73 45.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.4e-08 63.9 392 24.5
BcaC07g37383 Brassica carinata HOM05D005694 ORTHO05D031998 7.0e-06 56.2 93 41.9
BolC8t47687H Brassica oleracea HOM05D005694 ORTHO05D031998 7.0e-06 56.2 93 41.9
BolC8t47689H Brassica oleracea HOM05D005694 ORTHO05D031998 7.0e-06 56.2 93 41.9


User provided reference genes

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