Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G016260 Citrullus lanatus HOM05D005595 ORTHO05D006962 1.5e-57 226.1 126 100.0
CsaV3_6G042550 Cucumis sativus L. HOM05D005595 ORTHO05D006962 1.1e-34 150.2 143 58.7
MD17G1015300 Malus domestica HOM05D005595 ORTHO05D006962 1.1e-31 140.2 114 63.2
TPR.G22469 Trifolium pratense HOM05D000829 ORTHO05D006962 4.1e-31 138.3 114 65.8
Medtr3g082760 Medicago truncatula HOM05D005595 ORTHO05D006962 9.2e-31 137.1 114 64.9
MELO3C007496.2 Cucumis melo HOM05D005595 ORTHO05D006962 1.2e-30 136.7 117 62.4
Duzib093G1178 Durio zibethinus HOM05D005595 ORTHO05D006962 1.2e-30 136.7 143 51.7
Ca_04418_v3 Cicer arietinum L. HOM05D005595 ORTHO05D006962 2.7e-30 135.6 114 64.0
Ca_16345_v3 Cicer arietinum L. HOM05D005595 ORTHO05D006962 3.5e-30 135.2 114 63.2
FAN09G4421 Fragaria x ananassa HOM05D005595 ORTHO05D006962 3.5e-30 135.2 102 66.7
Phvul.010G007100 Phaseolus vulgaris HOM05D005595 ORTHO05D006962 3.5e-30 135.2 114 62.3
Duzib041G0186 Durio zibethinus HOM05D005595 ORTHO05D006962 4.6e-30 134.8 114 62.3
Glyma.19G075200 Glycine max HOM05D005595 ORTHO05D006962 4.6e-30 134.8 114 63.2
Glyma.19G180500 Glycine max HOM05D005595 ORTHO05D006962 4.6e-30 134.8 114 63.2
Psat5g104400 Pisum sativum HOM05D005595 ORTHO05D006962 4.6e-30 134.8 114 64.0
TWI23G0028 Tripterygium wilfordii HOM05D005595 ORTHO05D006962 4.6e-30 134.8 114 63.2
GSVIVG01001821001 Vitis vinifera HOM05D005595 ORTHO05D006962 4.6e-30 134.8 114 64.0
Sed0017898 Sechium edule HOM05D005595 ORTHO05D006962 6.0e-30 134.4 138 65.9
TWI59G1157 Tripterygium wilfordii HOM05D005595 ORTHO05D006962 1.0e-29 133.7 114 62.3
Aqoxy5G03493 Aquilegia oxysepala HOM05D005595 ORTHO05D006962 1.3e-29 133.3 114 60.5
Gohir.D05G248400 Gossypium hirsutum HOM05D005595 ORTHO05D006962 1.3e-29 133.3 114 62.3
Gorai.009G259400 Gossypium raimondii HOM05D005595 ORTHO05D006962 1.3e-29 133.3 114 62.3
Nitab4.5_0000401g0090 Nicotiana tabacum HOM05D005595 ORTHO05D006962 1.7e-29 132.9 114 62.3
Nitab4.5_0006964g0020 Nicotiana tabacum HOM05D005595 ORTHO05D006962 1.7e-29 132.9 114 62.3
PGR083G2585 Punica granatum HOM05D005595 ORTHO05D006962 1.7e-29 132.9 138 57.2
Ciclev10016747m.g Citrus clementina HOM05D005595 ORTHO05D006962 2.3e-29 132.5 114 61.4
Gohir.A05G246900 Gossypium hirsutum HOM05D005595 ORTHO05D006962 2.3e-29 132.5 114 61.4
Thecc.08G161400 Theobroma cacao HOM05D005595 ORTHO05D006962 2.3e-29 132.5 138 53.6
Glyma.20G058200 Glycine max HOM05D005595 ORTHO05D006962 3.0e-29 132.1 114 62.3
VMungo1127G0708 Vigna mungo HOM05D005595 ORTHO05D006962 3.0e-29 132.1 114 62.3
Eucgr.J02309 Eucalyptus grandis HOM05D005595 ORTHO05D006962 5.1e-29 131.3 114 61.4
RcHm_v2.0_Chr2g0174761 Rosa chinensis HOM05D005595 ORTHO05D006962 5.1e-29 131.3 114 61.4
CSS0001891 Camellia sinensis var. sinensis HOM05D005595 ORTHO05D006962 6.6e-29 131.0 123 58.5
Peaxi162Scf00753g00428 Petunia axillaris HOM05D005595 ORTHO05D006962 6.6e-29 131.0 114 62.3
RcHm_v2.0_Chr4g0409361 Rosa chinensis HOM05D005595 ORTHO05D006962 6.6e-29 131.0 114 60.5
EL10Ac8g19198 Beta vulgaris HOM05D005595 ORTHO05D006962 1.1e-28 130.2 119 56.3
Nn3g20286 Nelumbo nucifera HOM05D005595 ORTHO05D006962 1.1e-28 130.2 114 62.3
Cc07_g00580 Coffea canephora HOM05D005595 ORTHO05D006962 1.5e-28 129.8 114 61.4
Manes.17G105900 Manihot esculenta HOM05D005595 ORTHO05D006962 1.5e-28 129.8 114 60.5
Ah.09g228170 Amaranthus hybridus HOM05D005595 ORTHO05D006962 1.9e-28 129.4 138 53.6
Peaxi162Scf00047g00333 Petunia axillaris HOM05D005595 ORTHO05D006962 1.9e-28 129.4 114 61.4
FvH4_6g53020 Fragaria vesca HOM05D005595 ORTHO05D006962 2.5e-28 129.0 114 60.5
Prupe.3G148400 Prunus persica HOM05D005595 ORTHO05D006962 2.5e-28 129.0 114 59.6
Dinv37839 Davidia involucrata HOM05D005595 ORTHO05D006962 3.3e-28 128.6 114 61.4
Os08g0162033 Oryza sativa ssp. japonica HOM05D005595 ORTHO05D006962 3.3e-28 128.6 119 53.8
AUR62029058 Chenopodium quinoa HOM05D005595 ORTHO05D006962 4.3e-28 128.3 119 56.3
Dinv33365 Davidia involucrata HOM05D005595 ORTHO05D006962 4.3e-28 128.3 114 60.5
Oeu035209.1 Olea europaea HOM05D005595 ORTHO05D006962 4.3e-28 128.3 114 60.5
CANSAT64G2788 Cannabis sativa HOM05D005595 ORTHO05D006962 5.6e-28 127.9 114 58.8
CAN.G1333.9 Capsicum annuum HOM05D005595 ORTHO05D006962 5.6e-28 127.9 114 60.5
SEGI_22376 Sequoiadendron giganteum HOM05D005595 ORTHO05D006962 5.6e-28 127.9 114 59.6
TAR625G0935 Trochodendron aralioides HOM05D005595 ORTHO05D006962 5.6e-28 127.9 114 61.4
BcaNung05589 Brassica carinata HOM05D005595 ORTHO05D006962 7.3e-28 127.5 114 58.8
Solyc09g092090.4 Solanum lycopersicum HOM05D005595 ORTHO05D006962 7.3e-28 127.5 114 60.5
Sopen09g034960 Solanum pennellii HOM05D005595 ORTHO05D006962 7.3e-28 127.5 114 60.5
AUR62034098 Chenopodium quinoa HOM05D005595 ORTHO05D006962 9.6e-28 127.1 143 51.7
Lalb_Chr05g0227671 Lupinus albus HOM05D005595 ORTHO05D006962 9.6e-28 127.1 111 59.5
SGA_v2.0_scaffold47G17577 Striga asiatica HOM05D005595 ORTHO05D006962 9.6e-28 127.1 114 57.0
TAR633G2523 Trochodendron aralioides HOM05D005595 ORTHO05D006962 9.6e-28 127.1 114 61.4
Haze_14834 Corylus avellana HOM05D005595 ORTHO05D006962 1.2e-27 126.7 126 54.8
Hund25939 Selenicereus undatus HOM05D005595 ORTHO05D006962 1.2e-27 126.7 114 61.4
ECA232G1699 Erigeron canadensis HOM05D005595 ORTHO05D006962 1.6e-27 126.3 114 57.9
Thhalv10021543m.g Eutrema salsugineum HOM05D005595 ORTHO05D006962 1.6e-27 126.3 114 57.0
FAN05G0361 Fragaria x ananassa HOM05D005595 ORTHO05D006962 1.6e-27 126.3 114 59.6
LjContig00102g0027903 Lotus japonicus HOM05D005595 ORTHO05D006962 1.6e-27 126.3 114 59.6
THA.LOC104809576 Tarenaya hassleriana HOM05D005595 ORTHO05D006962 1.6e-27 126.3 114 61.4
arahy.Tifrunner.gnm1.ann1.AY8PV2 Arachis hypogaea HOM05D005595 ORTHO05D006962 2.1e-27 125.9 132 51.5
HPP92_011547 Vanilla planifolia HOM05D005595 ORTHO05D006962 2.8e-27 125.6 114 57.9
CARHR075140 Cardamine hirsuta HOM05D005595 ORTHO05D006962 3.6e-27 125.2 114 57.9
HanXRQChr08g0233931 Helianthus annuus HOM05D005595 ORTHO05D006962 3.6e-27 125.2 114 60.5
Nn1g08708 Nelumbo nucifera HOM05D005595 ORTHO05D006962 3.6e-27 125.2 114 59.6
Oeu013953.1 Olea europaea HOM05D005595 ORTHO05D006962 3.6e-27 125.2 114 58.8
QL02p072441 Quercus lobata HOM05D005595 ORTHO05D006962 6.2e-27 124.4 128 53.9
CSS0030746 Camellia sinensis var. sinensis HOM05D005595 ORTHO05D006962 8.1e-27 124.0 114 59.6
Potri.017G066000 Populus trichocarpa HOM05D005595 ORTHO05D006962 8.1e-27 124.0 114 57.9
Atru.chr6.2514 Acer truncatum HOM05D005595 ORTHO05D006962 1.1e-26 123.6 123 52.8
CiPaw.03G052400 Carya illinoinensis HOM05D005595 ORTHO05D006962 1.1e-26 123.6 114 59.6
PGSC0003DMG400026415 Solanum tuberosum HOM05D005595 ORTHO05D006962 1.1e-26 123.6 114 59.6
Zm00001eb365700 Zea mays HOM05D005595 ORTHO05D006962 1.1e-26 123.6 117 53.0
MSTRG.15560 Avicennia marina HOM05D005595 ORTHO05D006962 1.4e-26 123.2 114 57.9
Os05g0243300 Oryza sativa ssp. japonica HOM05D005595 ORTHO05D006962 1.4e-26 123.2 114 55.3
Aa31LG5G10920 Aethionema arabicum HOM05D005595 ORTHO05D006962 1.8e-26 122.9 114 57.0
vmacro18324 Vaccinium macrocarpon HOM05D005595 ORTHO05D006962 1.8e-26 122.9 147 51.0
AL3G10340 Arabidopsis lyrata HOM05D005595 ORTHO05D006962 2.4e-26 122.5 114 57.0
Migut.G01349 Erythranthe guttata HOM05D005595 ORTHO05D006962 2.4e-26 122.5 114 57.9
Thecc.04G030300 Theobroma cacao HOM05D005595 ORTHO05D006962 2.4e-26 122.5 114 56.1
AT3G01790 Arabidopsis thaliana HOM05D005595 ORTHO05D006962 3.1e-26 122.1 114 57.0
CSS0048340 Camellia sinensis var. sinensis HOM05D005595 ORTHO05D006962 3.1e-26 122.1 143 49.0
Carub.0003s0027 Capsella rubella HOM05D005595 ORTHO05D006962 3.1e-26 122.1 114 57.0
THA.LOC104813780 Tarenaya hassleriana HOM05D005595 ORTHO05D006962 1.2e-25 120.2 114 58.8
PSO063G5361 Papaver somniferum HOM05D005595 ORTHO05D006962 2.6e-25 119.0 114 56.1
arahy.Tifrunner.gnm1.ann1.HCN1MH Arachis hypogaea HOM05D005595 ORTHO05D006962 3.4e-25 118.6 129 49.6
Potri.001G334000 Populus trichocarpa HOM05D005595 ORTHO05D006962 4.4e-25 118.2 114 55.3
MBI10_g24386_MAGBIO Magnolia biondii HOM05D005595 ORTHO05D006962 5.8e-25 117.9 109 60.6
Lj3A195G12 Lonicera japonica HOM05D005595 ORTHO05D006962 7.6e-25 117.5 131 48.9
Lsat_1_v5_gn_4_185480 Lactuca sativa HOM05D005595 ORTHO05D006962 1.7e-24 116.3 114 54.4
ATR0723G078 Amborella trichopoda HOM05D005595 ORTHO05D006962 2.2e-24 115.9 118 50.8
PSO782G0616 Papaver somniferum HOM05D005595 ORTHO05D006962 4.9e-24 114.8 114 52.6
C03p39400 Brassica napus HOM05D005595 ORTHO05D006962 8.4e-24 114.0 109 58.7
A03p32350 Brassica napus HOM05D005595 ORTHO05D006962 1.9e-23 112.8 109 57.8
BraA03t12405Z Brassica rapa HOM05D005595 ORTHO05D006962 1.9e-23 112.8 109 57.8
SalBow1G1604 Salvia bowleyana HOM05D005595 ORTHO05D006962 7.1e-23 110.9 109 56.0
SEGI_32901 Sequoiadendron giganteum HOM05D005595 ORTHO05D006962 1.6e-22 109.8 102 56.9
AagrBONN_evm.TU.Sc2ySwM_344.3616 Anthoceros agrestis HOM05D005595 ORTHO05D006962 2.7e-22 109.0 111 52.3
Zm00001eb144650 Zea mays HOM05D005595 ORTHO05D006962 4.6e-22 108.2 110 48.2
Sp3g00270 Schrenkiella parvula HOM05D005595 ORTHO05D006962 6.0e-22 107.8 109 56.0
COL.COLO4_13732 Corchorus olitorius HOM05D005595 ORTHO05D006962 1.8e-18 96.3 141 44.7
Mapoly0030s0026 Marchantia polymorpha HOM05D005595 ORTHO05D006962 3.1e-18 95.5 114 46.5
Peaxi162Scf00318g00721 Petunia axillaris HOM05D005595 ORTHO05D006962 4.0e-18 95.1 50 88.0
unitig_0.g789 Utricularia gibba HOM05D005595 ORTHO05D006962 6.9e-18 94.4 111 48.6
FvH4_4g11850 Fragaria vesca HOM05D005595 ORTHO05D006962 9.0e-18 94.0 103 51.5
Pp3c1_3220 Physcomitrium patens HOM05D005595 ORTHO05D006962 2.6e-17 92.4 110 44.5
SGA_v2.0_scaffold154G37161 Striga asiatica HOM05D005595 ORTHO05D006962 3.4e-17 92.0 57 75.4
BolC3t16209H Brassica oleracea HOM05D005595 ORTHO05D006962 4.4e-17 91.7 56 76.8
SalBow7G1090 Salvia bowleyana HOM05D005595 ORTHO05D006962 2.9e-16 89.0 50 82.0
TAR629G0540 Trochodendron aralioides HOM05D005595 ORTHO05D006962 3.8e-16 88.6 50 84.0
CBR_g2974 Chara braunii HOM05D005595 ORTHO05D006962 8.4e-16 87.4 118 39.0
FAN14G1625 Fragaria x ananassa HOM05D000664 ORTHO05D000491 8.4e-16 87.4 50 80.0
SHI03897 Sapria himalayana HOM05D005595 ORTHO05D006962 4.2e-15 85.1 50 80.0
SMO117G0155 Selaginella moellendorffii HOM05D005595 ORTHO05D006962 1.6e-14 83.2 113 44.2
FAN12G0306 Fragaria x ananassa HOM05D005595 ORTHO05D006962 2.8e-11 72.4 116 39.7
CDE05G2376 Ceratophyllum demersum HOM05D006709 ORTHO05D008329 1.4e-10 70.1 38 84.2
FAN12G0063 Fragaria x ananassa HOM05D005595 ORTHO05D006962 5.3e-10 68.2 135 39.3
FAN14G1531 Fragaria x ananassa HOM05D005595 ORTHO05D006962 5.5e-07 58.2 38 68.4
HanXRQChr17g0550171 Helianthus annuus HOM05D005595 ORTHO05D006962 5.5e-07 58.2 32 75.0
Sabra17G0059400 Salix brachista HOM05D005595 ORTHO05D006962 9.3e-07 57.4 31 77.4
Sabra17G0061400 Salix brachista HOM05D005595 ORTHO05D006962 9.3e-07 57.4 31 77.4
CiPaw.04G034600 Carya illinoinensis HOM05D005595 ORTHO05D006962 1.6e-06 56.6 63 46.0
Sc18g0002160 Simmondsia chinensis HOM05D005595 ORTHO05D006962 2.1e-06 56.2 38 68.4
SEGI_06133 Sequoiadendron giganteum HOM05D005595 ORTHO05D006962 2.7e-06 55.8 38 65.8


User provided reference genes

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