Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 2567.0 1344 100.0
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 2362.8 1343 91.1
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 0.0e+00 2278.1 1400 86.8
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 2208.3 1343 85.9
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1531.5 1363 62.4
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1499.6 1358 61.7
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1498.8 1370 61.1
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1484.9 1356 61.2
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1468.8 1352 60.2
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1465.7 1352 60.1
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1454.9 1369 59.8
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1451.8 1356 59.1
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1451.0 1381 58.7
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1449.9 1352 59.5
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1446.4 1354 60.0
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1442.2 1489 55.6
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1439.1 1361 60.0
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1401.0 1365 58.5
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1392.9 1355 58.2
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1379.4 1378 56.8
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1372.5 1456 55.8
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1342.0 1350 56.5
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1338.6 1366 56.0
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1328.5 1364 58.4
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1327.8 1357 57.3
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1317.0 1349 56.7
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1313.9 1357 54.8
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 0.0e+00 1305.4 1354 56.5
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1302.0 1347 54.2
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1301.2 1351 55.7
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1298.9 1348 57.3
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 1298.5 1359 54.1
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 1297.7 1348 55.0
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1296.6 1349 57.1
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 0.0e+00 1295.0 1358 54.1
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1291.6 1402 53.6
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1288.5 1479 53.2
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1279.6 1394 52.9
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 1277.7 1353 55.4
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1275.4 1391 56.9
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1274.6 1351 56.0
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1269.6 1355 53.2
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1265.8 1394 52.5
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1264.6 1383 51.5
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 0.0e+00 1261.5 1406 52.2
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1260.4 1352 55.8
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1256.5 1396 52.1
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1250.7 1373 54.6
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1238.0 1369 52.8
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1234.6 1369 51.7
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 0.0e+00 1220.7 1379 55.0
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1218.0 1410 53.0
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1216.8 1363 51.6
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 0.0e+00 1211.4 1352 54.3
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1210.7 1362 51.6
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1208.4 1363 51.3
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1203.3 1357 50.6
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1194.5 1346 51.3
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1186.4 1354 51.4
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1174.8 1372 50.1
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1162.5 1427 48.6
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1161.4 1388 49.4
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1154.0 1397 49.7
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1153.7 1376 49.5
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 0.0e+00 1151.7 1345 50.2
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1151.0 1356 49.9
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 0.0e+00 1149.8 1366 50.1
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 0.0e+00 1147.1 1372 49.5
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 0.0e+00 1146.7 1354 50.1
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1142.9 1358 50.1
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1142.5 1346 49.6
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 1137.9 1397 48.9
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1134.8 1357 49.8
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1134.8 1357 49.8
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 0.0e+00 1134.8 1357 49.8
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 0.0e+00 1132.1 1364 49.3
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 0.0e+00 1131.7 1349 48.9
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 0.0e+00 1126.7 1357 51.0
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 0.0e+00 1115.9 1363 48.7
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1114.4 1357 48.4
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1110.9 1367 48.6
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 0.0e+00 1102.8 1356 48.5
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 0.0e+00 1094.7 1359 47.8
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 0.0e+00 1090.1 1318 49.8
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 0.0e+00 1088.6 1074 57.3
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 0.0e+00 1083.6 1427 46.8
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 0.0e+00 1077.0 1379 49.8
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 9.2e-312 1074.7 1264 52.2
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 5.7e-296 1021.5 1359 50.3
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 6.1e-290 1001.5 1355 45.8
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 7.5e-288 994.6 1382 44.0
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 7.8e-277 958.0 1363 43.4
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 2.9e-276 956.1 1094 50.4
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 1.4e-257 894.0 916 56.7
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 7.6e-256 888.3 1312 44.1
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 1.1e-235 821.2 920 52.7
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.5e-216 757.7 825 53.9
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 5.0e-215 752.7 618 71.2
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 1.8e-209 734.2 822 52.4
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 5.1e-204 716.1 712 57.6
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 3.7e-202 709.9 923 48.5
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 1.1e-201 708.4 785 53.5
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 1.4e-198 698.0 739 54.7
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 5.5e-198 696.0 702 56.6
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.0e-191 675.2 845 51.6
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.9e-190 671.0 480 76.9
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 4.3e-150 537.0 1278 31.6
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 3.5e-144 517.3 596 48.8
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 2.4e-137 494.6 358 71.8
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.3e-135 488.8 668 43.0
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 1.1e-132 479.2 1369 31.2
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 5.4e-129 466.8 1356 28.9
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 4.3e-126 457.2 1141 32.0
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 2.1e-125 454.9 511 49.7
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 1.9e-121 441.8 1296 28.5
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 9.0e-116 422.9 1048 32.0
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 1.2e-115 422.5 356 60.1
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.1e-102 379.4 417 47.7
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.2e-91 342.8 674 35.0
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 1.4e-79 302.8 439 40.5
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 1.7e-74 285.8 238 61.8
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.8e-68 265.8 326 43.9
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 5.2e-63 247.7 317 47.0
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 1.3e-61 243.0 374 44.7
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 3.7e-61 241.5 351 43.0
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 3.1e-52 211.8 226 53.1
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 2.4e-44 185.7 308 39.9
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 3.0e-42 178.7 271 38.0
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 2.3e-34 152.5 289 38.1
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 3.0e-34 152.1 291 36.4
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 2.1e-32 146.0 204 46.1
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 2.6e-30 139.0 732 27.9
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 1.7e-26 126.3 170 46.5
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.3e-26 125.9 120 60.0
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 5.6e-25 121.3 211 40.3
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 1.1e-23 117.1 95 60.0
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 1.8e-23 116.3 390 25.4
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 2.0e-22 112.8 368 27.2
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 7.6e-22 110.9 140 45.7
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 7.8e-19 100.9 495 26.5
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 3.9e-18 98.6 439 25.5
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 1.9e-09 69.7 69 52.2
SEGI_37730 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 3.3e-09 68.9 281 24.6
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 8.1e-08 64.3 86 47.7
TAR625G0866 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.2e-06 60.5 45 62.2
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 3.4e-06 58.9 61 49.2
MBI19_g06116_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D036548 4.5e-06 58.5 34 82.4


User provided reference genes

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