Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G014100 Citrullus lanatus HOM05D007129 ORTHO05D008680 1.6e-55 219.2 107 100.0
CsaV3_1G008250 Cucumis sativus L. HOM05D007129 ORTHO05D008680 1.6e-47 192.6 106 89.6
MELO3C002241.2 Cucumis melo HOM05D007129 ORTHO05D008680 2.5e-45 185.3 104 87.5
Sed0013262 Sechium edule HOM05D007129 ORTHO05D008680 9.6e-37 156.8 103 77.7
Eucgr.K02877 Eucalyptus grandis HOM05D007129 ORTHO05D008680 3.1e-27 125.2 106 63.2
FvH4_5g16440 Fragaria vesca HOM05D007129 ORTHO05D008680 3.1e-27 125.2 104 64.4
FAN18G4566 Fragaria x ananassa HOM05D007129 ORTHO05D008680 3.1e-27 125.2 104 64.4
FAN13G1816 Fragaria x ananassa HOM05D007129 ORTHO05D008680 5.3e-27 124.4 104 65.4
RcHm_v2.0_Chr7g0179661 Rosa chinensis HOM05D007129 ORTHO05D008680 9.0e-27 123.6 104 63.5
EL10Ac5g10824 Beta vulgaris HOM05D007129 ORTHO05D008680 1.3e-25 119.8 106 55.7
MD06G1180800 Malus domestica HOM05D007129 ORTHO05D008680 1.7e-25 119.4 104 62.5
THA.LOC104821441 Tarenaya hassleriana HOM05D007129 ORTHO05D008680 2.9e-25 118.6 104 61.5
CANSAT80G0701 Cannabis sativa HOM05D007129 ORTHO05D008680 4.9e-25 117.9 108 59.3
Migut.D01914 Erythranthe guttata HOM05D007129 ORTHO05D008680 8.4e-25 117.1 104 59.6
Atru.chr9.2406 Acer truncatum HOM05D007129 ORTHO05D008680 1.1e-24 116.7 104 57.7
Thecc.03G005100 Theobroma cacao HOM05D007129 ORTHO05D008680 3.2e-24 115.2 104 60.6
CiPaw.11G031300 Carya illinoinensis HOM05D007129 ORTHO05D008680 5.4e-24 114.4 106 58.5
Sp5g14130 Schrenkiella parvula HOM05D007129 ORTHO05D008680 5.4e-24 114.4 107 57.9
Prupe.5G178800 Prunus persica HOM05D007129 ORTHO05D008680 9.3e-24 113.6 107 60.7
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 1.2e-23 113.2 104 55.8
CARHR156520 Cardamine hirsuta HOM05D007129 ORTHO05D008680 2.1e-23 112.5 104 54.8
Duzib068G0087 Durio zibethinus HOM05D007129 ORTHO05D008680 2.1e-23 112.5 104 59.6
Lsat_1_v5_gn_4_73321 Lactuca sativa HOM05D007129 ORTHO05D008680 2.1e-23 112.5 105 58.1
CAN.G853.11 Capsicum annuum HOM05D007129 ORTHO05D008680 2.7e-23 112.1 105 56.2
Aqoxy3G00879 Aquilegia oxysepala HOM05D007129 ORTHO05D008680 3.5e-23 111.7 108 56.5
AUR62008280 Chenopodium quinoa HOM05D007129 ORTHO05D008680 4.6e-23 111.3 105 53.3
Duzib205G1103 Durio zibethinus HOM05D007129 ORTHO05D008680 4.6e-23 111.3 112 55.4
Oeu016337.1 Olea europaea HOM05D007129 ORTHO05D008680 4.6e-23 111.3 104 53.8
Aqoxy3G00878 Aquilegia oxysepala HOM05D007129 ORTHO05D008680 6.0e-23 110.9 109 56.0
Dinv09179 Davidia involucrata HOM05D007129 ORTHO05D008680 6.0e-23 110.9 114 54.4
Cc00_g15150 Coffea canephora HOM05D007129 ORTHO05D008680 7.9e-23 110.5 111 53.2
Hund02711 Selenicereus undatus HOM05D007129 ORTHO05D008680 1.0e-22 110.2 105 54.3
vmacro16590 Vaccinium macrocarpon HOM05D007129 ORTHO05D008680 1.0e-22 110.2 109 54.1
GSVIVG01007819001 Vitis vinifera HOM05D007129 ORTHO05D008680 1.0e-22 110.2 112 55.4
Gorai.008G298100 Gossypium raimondii HOM05D007129 ORTHO05D008680 1.3e-22 109.8 113 52.2
Nitab4.5_0001286g0070 Nicotiana tabacum HOM05D007129 ORTHO05D008680 1.3e-22 109.8 103 57.3
PGSC0003DMG401024472 Solanum tuberosum HOM05D007129 ORTHO05D008680 1.3e-22 109.8 103 56.3
Thhalv10010580m.g Eutrema salsugineum HOM05D007129 ORTHO05D008680 1.8e-22 109.4 110 56.4
Nitab4.5_0001642g0040 Nicotiana tabacum HOM05D007129 ORTHO05D008680 1.8e-22 109.4 108 54.6
QL10p012428 Quercus lobata HOM05D007129 ORTHO05D008680 1.8e-22 109.4 104 54.8
Sc12g0005690 Simmondsia chinensis HOM05D007129 ORTHO05D008680 1.8e-22 109.4 104 56.7
SalBow6G7050 Salvia bowleyana HOM05D007129 ORTHO05D008680 2.3e-22 109.0 102 52.9
Gohir.D12G277500 Gossypium hirsutum HOM05D007129 ORTHO05D008680 3.0e-22 108.6 113 52.2
BcaC09g49826 Brassica carinata HOM05D007129 ORTHO05D008680 3.9e-22 108.2 104 57.7
C01p32560 Brassica napus HOM05D007129 ORTHO05D008680 3.9e-22 108.2 104 57.7
BolC1t03194H Brassica oleracea HOM05D007129 ORTHO05D008680 3.9e-22 108.2 104 57.7
Solyc03g113880.4 Solanum lycopersicum HOM05D007129 ORTHO05D008680 3.9e-22 108.2 103 56.3
AL5G27120 Arabidopsis lyrata HOM05D007129 ORTHO05D008680 6.7e-22 107.5 104 56.7
CSS0035860 Camellia sinensis var. sinensis HOM05D007129 ORTHO05D008680 6.7e-22 107.5 105 58.1
Ciclev10021561m.g Citrus clementina HOM05D007129 ORTHO05D008680 6.7e-22 107.5 105 54.3
Lj9A453T29 Lonicera japonica HOM05D007129 ORTHO05D008680 6.7e-22 107.5 107 53.3
Sopen03g032940 Solanum pennellii HOM05D007129 ORTHO05D008680 8.7e-22 107.1 103 56.3
Ah.11g046160 Amaranthus hybridus HOM05D000306 ORTHO05D003182 1.1e-21 106.7 106 52.8
MSTRG.9665 Avicennia marina HOM05D007129 ORTHO05D008680 1.1e-21 106.7 111 52.3
Ah.08g219200 Amaranthus hybridus HOM05D007129 ORTHO05D008680 1.5e-21 106.3 106 53.8
AT3G47830 Arabidopsis thaliana HOM05D007129 ORTHO05D008680 1.5e-21 106.3 106 53.8
Rhsim12G0161900 Rhododendron simsii HOM05D007129 ORTHO05D008680 1.5e-21 106.3 111 54.1
Haze_07441 Corylus avellana HOM05D007129 ORTHO05D008680 1.9e-21 105.9 104 56.7
PGR044G2359 Punica granatum HOM05D007129 ORTHO05D008680 1.9e-21 105.9 111 53.2
TAR629G0718 Trochodendron aralioides HOM05D007129 ORTHO05D008680 1.9e-21 105.9 120 51.7
Gohir.A12G276500 Gossypium hirsutum HOM05D007129 ORTHO05D008680 2.5e-21 105.5 113 51.3
TWI15G0302 Tripterygium wilfordii HOM05D007129 ORTHO05D008680 2.5e-21 105.5 104 57.7
Actinidia34958 Actinidia chinensis HOM05D002131 ORTHO05D008680 3.3e-21 105.1 104 54.8
BraA01t02492Z Brassica rapa HOM05D007129 ORTHO05D008680 3.3e-21 105.1 104 55.8
HanXRQChr09g0271771 Helianthus annuus HOM05D007129 ORTHO05D008680 3.3e-21 105.1 104 51.9
BcaNung06176 Brassica carinata HOM05D007129 ORTHO05D008680 4.3e-21 104.8 104 58.7
A01p25760 Brassica napus HOM05D007129 ORTHO05D008680 4.3e-21 104.8 104 54.8
MBI14_g22548_MAGBIO Magnolia biondii HOM05D007129 ORTHO05D008680 4.3e-21 104.8 102 53.9
Carub.0005s1394 Capsella rubella HOM05D007129 ORTHO05D008680 5.6e-21 104.4 104 54.8
Sabra15G0096300 Salix brachista HOM05D007129 ORTHO05D008680 5.6e-21 104.4 113 52.2
Cfa019070 Carpinus fangiana HOM05D007129 ORTHO05D008680 7.4e-21 104.0 104 55.8
Hma1.2p1_1643F.1_g295180 Hydrangea macrophylla HOM05D007129 ORTHO05D008680 7.4e-21 104.0 112 50.9
Hma1.2p1_1643F.1_g295190 Hydrangea macrophylla HOM05D007129 ORTHO05D008680 7.4e-21 104.0 112 50.9
Sabra15G0095300 Salix brachista HOM05D007129 ORTHO05D008680 7.4e-21 104.0 114 51.8
Peaxi162Scf00017g02522 Petunia axillaris HOM05D007129 ORTHO05D008680 9.6e-21 103.6 103 56.3
Ah.05g173910 Amaranthus hybridus HOM05D007129 ORTHO05D008680 1.3e-20 103.2 106 51.9
COL.COLO4_04322 Corchorus olitorius HOM05D002131 ORTHO05D008680 2.8e-20 102.1 103 53.4
ECA232G1293 Erigeron canadensis HOM05D000306 ORTHO05D000410 2.8e-20 102.1 104 54.8
Medtr4g106380 Medicago truncatula HOM05D007129 ORTHO05D008680 2.8e-20 102.1 103 50.5
arahy.Tifrunner.gnm1.ann1.JUK8XQ Arachis hypogaea HOM05D007129 ORTHO05D008680 6.2e-20 100.9 103 54.4
BcaB05g23081 Brassica carinata HOM05D007129 ORTHO05D008680 6.2e-20 100.9 103 57.3
Cpa.g.sc35.61 Carica papaya HOM05D007129 ORTHO05D008680 1.1e-19 100.1 113 51.3
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 1.4e-19 99.8 117 49.6
Nn4g22908 Nelumbo nucifera HOM05D007129 ORTHO05D008680 1.4e-19 99.8 115 52.2
Potri.015G071300 Populus trichocarpa HOM05D007129 ORTHO05D008680 2.4e-19 99.0 115 47.8
Ca_21890_v3 Cicer arietinum L. HOM05D007129 ORTHO05D008680 3.1e-19 98.6 103 48.5
TPR.G37473 Trifolium pratense HOM05D007129 ORTHO05D008680 2.0e-18 95.9 102 51.0
Phvul.003G197200 Phaseolus vulgaris HOM05D007129 ORTHO05D008680 2.6e-18 95.5 103 52.4
arahy.Tifrunner.gnm1.ann1.N0S5JS Arachis hypogaea HOM05D007129 ORTHO05D008680 3.4e-18 95.1 103 51.5
Glyma.U031407 Glycine max HOM05D007129 ORTHO05D008680 3.4e-18 95.1 103 53.4
Lj4g0013003 Lotus japonicus HOM05D007129 ORTHO05D008680 5.8e-18 94.4 103 50.5
Manes.06G101100 Manihot esculenta HOM05D007129 ORTHO05D008680 5.8e-18 94.4 88 52.3
Psat4g055920 Pisum sativum HOM05D007129 ORTHO05D008680 5.8e-18 94.4 103 47.6
VMungo1215G0430 Vigna mungo HOM05D007129 ORTHO05D008680 9.9e-18 93.6 103 51.5
Zm00001eb279940 Zea mays HOM05D007129 ORTHO05D008680 1.1e-16 90.1 105 50.5
PSO161G0060 Papaver somniferum HOM05D007129 ORTHO05D008680 1.4e-16 89.7 110 48.2
ATR1149G142 Amborella trichopoda HOM05D007129 ORTHO05D008680 1.9e-16 89.4 103 45.6
PSO478G1802 Papaver somniferum HOM05D007129 ORTHO05D008680 4.2e-16 88.2 110 47.3
Lalb_Chr12g0201391 Lupinus albus HOM05D007129 ORTHO05D008680 1.3e-14 83.2 103 46.6
SEGI_05000 Sequoiadendron giganteum HOM05D007129 ORTHO05D008680 5.6e-13 77.8 131 37.4
AUR62031041 Chenopodium quinoa HOM05D002131 ORTHO05D008680 1.4e-11 73.2 78 53.8
Mapoly0074s0054 Marchantia polymorpha HOM05D007129 ORTHO05D008680 4.0e-11 71.6 130 34.6
FAN08G0536 Fragaria x ananassa HOM05D002131 ORTHO05D002141 9.0e-11 70.5 59 64.4
Os06g0237900 Oryza sativa ssp. japonica HOM05D007129 ORTHO05D008680 4.9e-09 64.7 91 41.8
AagrBONN_evm.TU.Sc2ySwM_344.1694 Anthoceros agrestis HOM05D007129 ORTHO05D008680 6.5e-09 64.3 160 30.0
Pp3c2_36940 Physcomitrium patens HOM05D007129 ORTHO05D008680 6.5e-09 64.3 127 34.6
Migut.D01796 Erythranthe guttata HOM05D007129 ORTHO05D008680 5.5e-08 61.2 39 76.9
Sabra15G0076600 Salix brachista HOM05D007129 ORTHO05D008680 5.5e-08 61.2 108 39.8
MCO09G188 Micromonas commoda HOM05D007129 ORTHO05D008680 2.7e-07 58.9 103 36.9


User provided reference genes

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