Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 0.0e+00 1798.1 937 100.0
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1640.2 931 92.7
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1639.8 931 92.4
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1545.4 930 87.5
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1265.0 970 70.4
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1218.8 967 68.7
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1214.5 963 68.2
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1191.4 960 67.5
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1184.1 971 67.3
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1178.3 968 66.8
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1170.6 945 67.5
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1168.3 966 66.8
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1160.6 963 66.1
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1160.2 975 65.1
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1159.8 970 66.7
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1157.1 966 65.2
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1156.4 978 66.4
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1154.0 960 66.6
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1152.5 966 66.4
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1151.3 954 66.6
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1150.6 967 65.6
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1149.8 966 66.3
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1149.4 949 66.5
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1145.6 984 64.9
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1145.2 963 66.6
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1141.7 966 65.7
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1140.9 975 65.5
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1140.6 941 66.5
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1137.9 955 65.4
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1135.2 969 65.8
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1134.0 964 65.8
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1130.9 949 65.6
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1130.9 960 65.4
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1119.4 960 65.0
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1113.6 945 65.2
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1109.4 943 64.6
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1106.3 941 64.8
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1099.3 938 64.4
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1098.6 960 64.4
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1098.2 987 63.8
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1097.8 962 63.2
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1096.3 953 64.2
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1094.7 972 64.9
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1092.0 970 64.6
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1082.8 945 64.8
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1076.2 973 62.3
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 6.3e-310 1067.4 974 60.8
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 1.2e-308 1063.1 965 62.9
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 2.9e-307 1058.5 966 61.8
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 1.6e-305 1052.7 969 62.3
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 2.8e-305 1052.0 956 62.0
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 8.9e-304 1047.0 929 63.0
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 1.1e-301 1040.0 911 65.2
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 4.1e-301 1038.1 965 60.8
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 2.7e-300 1035.4 967 61.0
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 4.5e-300 1034.6 963 60.6
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 7.8e-300 1033.9 958 61.7
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 2.9e-299 1031.9 950 62.6
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 1.6e-297 1026.2 975 60.1
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 5.2e-296 1021.1 958 61.1
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 3.4e-295 1018.5 924 61.6
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 1.7e-294 1016.1 923 61.9
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 8.3e-294 1013.8 924 61.0
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 5.4e-293 1011.1 964 60.6
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 7.0e-293 1010.7 927 62.9
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 1.2e-292 1010.0 968 59.2
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 2.0e-292 1009.2 965 60.3
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 7.8e-292 1007.3 960 60.9
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 8.6e-291 1003.8 973 60.5
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 1.9e-290 1002.7 1022 58.0
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 7.3e-290 1000.7 963 60.1
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 1.8e-288 996.1 964 60.1
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 4.6e-284 981.5 956 60.0
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 7.8e-284 980.7 999 57.1
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 7.8e-284 980.7 923 59.7
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 1.7e-283 979.5 942 59.1
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 6.2e-281 971.1 953 59.4
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 1.5e-279 966.5 1101 52.5
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 7.5e-279 964.1 959 58.5
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 9.9e-279 963.8 897 61.1
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 1.2e-276 956.8 914 60.1
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 4.0e-272 941.8 914 59.6
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 2.9e-270 935.6 911 58.7
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 9.2e-269 930.6 914 58.9
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 6.0e-268 927.9 917 57.9
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 6.0e-268 927.9 986 56.5
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 1.7e-267 926.4 947 57.4
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 1.6e-265 919.8 905 58.8
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 2.8e-265 919.1 862 63.0
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 4.8e-265 918.3 916 57.8
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 2.7e-260 902.5 904 57.4
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 6.7e-251 871.3 939 56.1
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 3.7e-249 865.5 752 62.9
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 3.4e-247 859.0 753 62.7
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 1.3e-238 830.5 914 52.5
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 2.7e-236 822.8 1070 49.2
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 4.6e-236 822.0 784 61.1
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 6.1e-236 821.6 905 51.5
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 7.2e-229 798.1 900 53.1
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 5.1e-227 792.0 772 58.5
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 5.3e-224 781.9 916 52.0
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 2.9e-222 776.2 936 52.4
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 7.4e-218 761.5 861 54.2
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.9e-213 746.9 911 52.0
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 2.2e-209 733.4 778 56.4
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 2.9e-206 723.0 880 51.7
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 6.3e-193 678.7 934 48.5
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 5.4e-192 675.6 646 60.1
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.7e-167 593.6 420 75.5
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 6.0e-167 592.4 428 74.3
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.2e-156 558.1 956 39.7
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 9.9e-154 548.5 956 39.3
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 1.4e-152 544.7 915 37.5
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.6e-151 541.2 954 37.9
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 2.1e-151 540.8 959 38.3
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 2.4e-131 474.2 398 66.8
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 3.1e-131 473.8 869 35.6
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 6.9e-131 472.6 461 57.7
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 5.8e-130 469.5 498 54.8
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.3e-117 427.2 344 66.0
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 5.5e-104 383.3 666 39.8
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 3.6e-103 380.6 543 45.9
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 3.7e-100 370.5 338 60.1
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 2.1e-95 354.8 833 31.9
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 4.0e-94 350.5 357 54.9
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 7.5e-85 319.7 360 55.3
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.5e-80 305.4 360 50.0
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 2.9e-73 281.2 234 67.9
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 1.2e-69 269.2 357 47.9
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 4.6e-66 257.3 465 40.4
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 8.9e-62 243.0 190 69.5
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 6.2e-55 220.3 508 34.4
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.1e-54 218.0 161 75.2
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.1e-54 218.0 161 75.2
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 1.1e-51 209.5 131 84.0
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 5.8e-45 187.2 131 77.1
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 6.4e-44 183.7 140 72.1
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 1.9e-43 182.2 128 75.8
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 2.1e-42 178.7 884 24.4
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 7.6e-37 160.2 135 66.7
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 4.2e-35 154.5 184 46.7
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.2e-34 152.9 192 53.1
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 4.3e-32 144.4 835 21.7
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 7.3e-32 143.7 112 71.4
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 5.8e-29 134.0 88 84.1
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.1e-27 129.8 162 52.5
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 1.1e-24 119.8 104 64.4
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 3.3e-24 118.2 291 27.8
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.3e-23 116.3 112 57.1
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 9.9e-21 106.7 85 60.0
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 1.9e-19 102.4 95 57.9
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 5.6e-16 90.9 65 67.7
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 5.6e-16 90.9 67 62.7
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 7.4e-16 90.5 101 48.5
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 7.4e-16 90.5 84 53.6
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 6.9e-14 84.0 64 60.9
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 1.6e-10 72.8 71 52.1
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 4.6e-10 71.2 59 69.5
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 6.0e-10 70.9 76 48.7
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 1.3e-09 69.7 43 81.4
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.9e-08 65.9 43 69.8


User provided reference genes

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