Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 1.4e-174 616.3 336 100.0
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 5.3e-150 534.6 336 83.6
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 7.7e-149 530.8 329 85.7
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 5.1e-145 518.1 332 81.9
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 1.8e-121 439.9 309 77.3
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 2.0e-120 436.4 319 74.6
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 2.0e-117 426.4 311 72.3
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 4.2e-115 418.7 300 74.7
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 3.0e-113 412.5 330 67.3
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 3.0e-113 412.5 301 73.4
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 5.7e-112 408.3 332 66.9
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 9.8e-112 407.5 296 71.3
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.1e-110 404.1 330 67.0
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 1.4e-110 403.7 288 72.6
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 1.4e-110 403.7 314 70.7
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 1.8e-110 403.3 312 69.6
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.2e-109 400.6 317 69.4
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 1.2e-109 400.6 303 68.6
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.2e-109 400.6 326 68.7
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 2.0e-109 399.8 330 66.7
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 2.0e-109 399.8 276 71.7
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 3.5e-109 399.1 312 70.2
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.0e-108 397.5 323 67.2
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 3.8e-108 395.6 330 66.7
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 1.1e-107 394.0 316 69.6
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 1.9e-107 393.3 329 66.9
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 3.3e-107 392.5 288 71.5
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 4.2e-107 392.1 271 74.2
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 9.5e-107 391.0 300 68.7
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 3.6e-106 389.0 305 66.6
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 6.1e-106 388.3 307 67.1
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 6.1e-106 388.3 325 63.1
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 1.8e-105 386.7 274 74.1
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 2.3e-105 386.3 279 74.2
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 3.0e-105 386.0 328 67.7
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 4.0e-105 385.6 283 70.7
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 6.8e-105 384.8 306 67.6
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 1.2e-104 384.0 308 67.9
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 1.5e-104 383.6 326 66.3
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 2.0e-104 383.3 301 68.1
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.1e-102 377.5 298 65.4
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 1.1e-102 377.5 278 70.9
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 3.1e-102 375.9 309 68.0
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 3.1e-102 375.9 309 66.3
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 4.1e-102 375.6 308 65.3
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 9.2e-102 374.4 327 66.1
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 1.6e-101 373.6 288 72.6
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 7.8e-101 371.3 313 64.5
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 2.3e-100 369.8 307 67.1
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 3.9e-100 369.0 288 67.7
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 1.1e-99 367.5 280 67.9
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 4.3e-99 365.5 295 65.8
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 4.3e-99 365.5 249 74.3
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 3.6e-98 362.5 290 66.9
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 2.3e-97 359.8 309 62.8
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 3.1e-97 359.4 257 73.9
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 2.6e-96 356.3 279 68.1
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 2.6e-96 356.3 280 68.6
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 4.4e-96 355.5 289 66.8
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 1.7e-95 353.6 330 62.7
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 1.4e-94 350.5 312 64.1
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 3.2e-94 349.4 219 79.0
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 4.1e-94 349.0 219 79.0
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 5.4e-94 348.6 267 72.7
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 7.0e-94 348.2 222 75.7
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 2.7e-93 346.3 271 70.8
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 3.5e-93 345.9 304 63.5
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 7.8e-93 344.7 286 61.9
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 1.3e-92 344.0 333 60.7
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 2.3e-92 343.2 223 76.2
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.1e-91 340.9 365 53.4
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 1.5e-91 340.5 299 61.2
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 2.5e-91 339.7 222 75.2
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 3.3e-91 339.3 324 60.2
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 4.3e-91 339.0 309 62.8
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 4.3e-91 339.0 305 64.3
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 1.2e-90 337.4 284 67.6
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 1.2e-90 337.4 261 70.9
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 2.8e-90 336.3 314 60.5
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 8.0e-90 334.7 301 63.5
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.1e-89 334.3 313 60.1
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 4.0e-89 332.4 304 61.5
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 4.0e-89 332.4 311 63.3
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 1.2e-88 330.9 296 63.2
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 1.2e-88 330.9 289 67.1
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 1.5e-88 330.5 251 69.3
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 5.8e-88 328.6 272 67.3
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 2.2e-87 326.6 285 64.9
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 4.1e-86 322.4 297 63.6
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 4.1e-86 322.4 290 63.1
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 4.1e-86 322.4 330 59.7
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 4.1e-86 322.4 330 59.7
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 9.2e-86 321.2 291 64.3
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 1.6e-85 320.5 297 63.0
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 2.1e-85 320.1 291 63.9
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 2.1e-85 320.1 330 56.7
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 6.0e-85 318.5 330 56.4
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 7.8e-85 318.2 330 58.8
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 2.3e-84 316.6 291 63.2
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 2.3e-84 316.6 291 63.2
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 2.8e-82 309.7 259 64.1
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 6.2e-82 308.5 294 58.5
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 1.2e-80 304.3 292 62.7
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 3.7e-79 299.3 309 58.6
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 1.9e-78 297.0 292 61.6
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 7.1e-78 295.0 326 54.9
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 2.5e-75 286.6 233 61.4
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.1e-73 281.2 181 74.0
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 1.4e-70 270.8 274 55.5
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 1.6e-69 267.3 314 53.5
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 9.9e-64 248.1 266 50.0
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 5.4e-62 242.3 284 48.9
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 5.1e-60 235.7 133 86.5
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 3.3e-59 233.0 375 46.9
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.6e-58 230.7 341 41.6
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 2.6e-56 223.4 237 48.5
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 6.7e-52 208.8 266 45.9
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 2.0e-48 197.2 135 69.6
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 5.8e-48 195.7 180 61.7
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 1.0e-47 194.9 120 78.3
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 2.2e-39 167.2 257 39.7
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 1.2e-37 161.4 95 81.1
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 1.2e-37 161.4 97 79.4
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 6.7e-36 155.6 277 35.7
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 2.2e-34 150.6 177 43.5
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 1.5e-24 117.9 149 51.7
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 4.5e-24 116.3 70 77.1
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 7.7e-24 115.5 285 27.7
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 2.2e-23 114.0 120 55.0
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 2.9e-23 113.6 196 33.2
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.1e-14 85.1 345 26.4
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 4.7e-13 79.7 233 26.6
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 6.7e-12 75.9 56 69.6
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.0e-11 74.3 192 27.1
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 7.0e-09 65.9 54 61.1
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 5.0e-07 59.7 106 28.3


User provided reference genes

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