Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 5.5e-142 507.7 268 100.0
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 1.5e-126 456.4 268 90.3
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 2.0e-120 436.0 277 85.6
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 2.7e-104 382.5 211 93.8
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 1.9e-102 376.3 281 71.2
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 1.2e-101 373.6 268 75.0
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 4.0e-100 368.6 271 74.5
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 5.2e-100 368.2 271 74.5
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 1.5e-99 366.7 239 80.3
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 2.0e-99 366.3 230 81.7
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.3e-98 363.6 276 73.2
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 1.7e-98 363.2 272 71.7
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 2.2e-98 362.8 275 71.6
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 6.4e-98 361.3 272 73.5
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 5.4e-97 358.2 274 71.5
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 1.2e-96 357.1 274 70.4
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 2.1e-96 356.3 254 74.0
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 3.5e-96 355.5 265 73.2
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 4.6e-96 355.1 274 70.8
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 1.0e-95 354.0 269 70.6
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 1.7e-95 353.2 241 75.5
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 2.3e-95 352.8 238 78.6
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 3.0e-95 352.4 304 65.5
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 3.0e-95 352.4 278 70.9
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 3.0e-95 352.4 271 71.2
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 6.6e-95 351.3 260 71.9
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 1.9e-94 349.7 249 75.5
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 2.5e-94 349.4 258 70.2
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 3.3e-94 349.0 277 69.3
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 4.3e-94 348.6 240 74.6
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 2.1e-93 346.3 222 80.6
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 3.6e-93 345.5 281 68.3
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 1.1e-92 344.0 271 71.2
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 2.4e-92 342.8 240 73.8
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 4.0e-92 342.0 229 77.7
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 5.3e-92 341.7 275 68.7
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 9.0e-92 340.9 226 77.9
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 9.0e-92 340.9 233 76.0
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 2.0e-91 339.7 267 65.9
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 2.0e-91 339.7 234 76.1
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 4.4e-91 338.6 260 69.6
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 1.3e-90 337.0 237 74.7
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 1.3e-90 337.0 263 70.0
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 2.2e-90 336.3 237 74.3
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 4.9e-90 335.1 257 66.9
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 6.4e-90 334.7 257 66.1
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 6.4e-90 334.7 246 72.8
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 8.4e-90 334.3 227 74.9
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 8.4e-90 334.3 208 80.8
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 1.1e-89 334.0 211 80.6
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 1.1e-89 334.0 263 65.8
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 1.4e-89 333.6 271 66.8
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.4e-89 333.6 277 66.8
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.9e-89 333.2 221 76.5
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 1.9e-89 333.2 221 76.9
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 4.2e-89 332.0 222 75.7
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 4.2e-89 332.0 219 76.7
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 5.4e-89 331.6 265 69.1
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 5.4e-89 331.6 221 76.5
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 5.4e-89 331.6 221 77.4
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 7.1e-89 331.3 233 74.7
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 7.1e-89 331.3 210 81.0
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 9.3e-89 330.9 225 74.7
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 1.2e-88 330.5 232 75.9
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 1.2e-88 330.5 226 74.8
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 1.6e-88 330.1 221 76.5
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.1e-88 329.7 221 74.7
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 2.1e-88 329.7 303 61.7
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 3.5e-88 328.9 221 76.5
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 4.6e-88 328.6 274 63.5
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 4.6e-88 328.6 221 76.0
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 4.6e-88 328.6 221 76.0
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 7.8e-88 327.8 244 70.9
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 3.9e-87 325.5 264 67.4
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 8.7e-87 324.3 257 68.9
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 1.1e-86 323.9 272 66.2
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 2.5e-86 322.8 262 66.0
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 5.6e-86 321.6 225 71.1
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 7.3e-86 321.2 221 73.8
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 7.3e-86 321.2 263 65.0
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 7.3e-86 321.2 239 70.7
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 9.6e-86 320.9 211 75.4
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 1.3e-85 320.5 269 66.2
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 1.6e-85 320.1 245 70.6
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 1.6e-85 320.1 245 70.6
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 1.6e-85 320.1 264 67.4
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 1.6e-85 320.1 243 71.6
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 4.8e-85 318.5 254 67.3
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 1.1e-84 317.4 238 69.7
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 1.1e-84 317.4 277 61.4
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 1.4e-84 317.0 217 72.4
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 3.1e-84 315.8 264 67.0
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 5.3e-84 315.1 245 69.8
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 5.3e-84 315.1 210 73.8
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 4.5e-83 312.0 177 85.9
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 9.9e-83 310.8 177 85.3
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 9.9e-83 310.8 218 72.5
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 2.2e-82 309.7 260 66.9
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 4.9e-82 308.5 274 61.7
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 8.4e-82 307.8 177 83.6
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 4.2e-81 305.4 277 60.3
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 9.3e-81 304.3 286 62.2
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.6e-80 303.5 217 71.4
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 2.3e-79 299.7 219 70.8
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 7.4e-78 294.7 243 64.6
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 1.3e-77 293.9 221 67.4
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 2.1e-72 276.6 214 64.0
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 3.5e-72 275.8 219 62.6
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 8.2e-69 264.6 214 67.8
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 4.5e-67 258.8 180 70.0
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 3.1e-60 236.1 174 62.6
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 1.2e-59 234.2 181 62.4
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 3.6e-48 196.1 114 85.1
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 4.7e-48 195.7 135 74.1
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.5e-46 190.7 152 64.5
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 3.8e-42 176.0 180 50.0
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 5.7e-38 162.2 260 38.8
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 2.7e-24 116.7 180 36.7
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 8.3e-21 105.1 75 74.7
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 8.6e-18 95.1 111 51.4
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.9e-17 94.0 56 78.6
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 5.4e-12 75.9 61 62.3
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 3.6e-08 63.2 173 26.0
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 8.0e-08 62.0 176 27.3
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 1.4e-07 61.2 173 27.2
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 3.1e-07 60.1 173 24.9
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 4.0e-07 59.7 208 24.5
Ciclev10032629m.g Citrus clementina HOM05D002933 ORTHO05D009221 5.2e-07 59.3 173 24.9
PGR142G1118 Punica granatum HOM05D002933 ORTHO05D009221 8.9e-07 58.5 175 25.1
TAR369G0833 Trochodendron aralioides HOM05D002933 ORTHO05D009221 1.2e-06 58.2 173 24.9
ATR0033G007 Amborella trichopoda HOM05D002933 ORTHO05D009221 1.5e-06 57.8 173 25.4
Eucgr.G02907 Eucalyptus grandis HOM05D002933 ORTHO05D009221 1.5e-06 57.8 176 26.1
Lsat_1_v5_gn_2_115981 Lactuca sativa HOM05D002933 ORTHO05D009221 1.5e-06 57.8 174 26.4
Thecc.10G052300 Theobroma cacao HOM05D002933 ORTHO05D009221 1.5e-06 57.8 175 26.9
Duzib114G0802 Durio zibethinus HOM05D002933 ORTHO05D009221 2.6e-06 57.0 175 26.9
ECA238G2744 Erigeron canadensis HOM05D002933 ORTHO05D009221 2.6e-06 57.0 174 25.9
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 2.6e-06 57.0 173 26.0
Ca_11296_v3 Cicer arietinum L. HOM05D002933 ORTHO05D009221 3.4e-06 56.6 173 24.3
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 3.4e-06 56.6 228 21.9
FAN06G0750 Fragaria x ananassa HOM05D002933 ORTHO05D009221 4.4e-06 56.2 228 22.8
CANSAT56G4077 Cannabis sativa HOM05D002933 ORTHO05D009221 5.8e-06 55.8 176 25.0
Lj5g0017951 Lotus japonicus HOM05D002933 ORTHO05D009221 5.8e-06 55.8 174 25.3
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 5.8e-06 55.8 228 21.9
PSO206G0047 Papaver somniferum HOM05D002933 ORTHO05D009221 5.8e-06 55.8 176 22.7
PSO339G0478 Papaver somniferum HOM05D002933 ORTHO05D009221 5.8e-06 55.8 176 22.7
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 5.8e-06 55.8 56 58.9
CAN.G104.6 Capsicum annuum HOM05D002933 ORTHO05D009221 7.5e-06 55.5 173 24.9
Cpa.g.sc1.348 Carica papaya HOM05D002933 ORTHO05D009221 7.5e-06 55.5 173 24.9
PGSC0003DMG400026667 Solanum tuberosum HOM05D002933 ORTHO05D009221 7.5e-06 55.5 173 24.9
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 7.5e-06 55.5 180 25.6
Aqoxy4G03026 Aquilegia oxysepala HOM05D002933 ORTHO05D009221 9.8e-06 55.1 173 24.9
Medtr1g115410 Medicago truncatula HOM05D002933 ORTHO05D009221 9.8e-06 55.1 175 24.0


User provided reference genes

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