Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 4.0e-180 635.6 319 100.0
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 3.2e-153 546.2 319 86.2
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 8.5e-146 521.5 316 83.2
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 7.2e-145 518.5 319 83.1
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 5.0e-90 336.3 326 56.4
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 1.2e-88 331.6 318 52.5
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 1.4e-87 328.2 322 54.7
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 4.4e-86 323.2 319 52.4
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 9.8e-86 322.0 324 52.5
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 1.1e-84 318.5 320 51.9
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 9.2e-84 315.5 323 51.4
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 9.2e-84 315.5 322 50.3
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 7.8e-83 312.4 320 49.7
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 3.0e-82 310.5 325 48.9
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 3.3e-81 307.0 325 48.9
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 4.7e-80 303.1 320 52.2
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 1.1e-79 302.0 297 53.5
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 1.4e-79 301.6 321 54.2
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 5.2e-79 299.7 316 50.6
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 8.9e-79 298.9 314 54.1
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 2.6e-78 297.4 321 48.9
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 5.8e-78 296.2 319 53.3
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 5.8e-78 296.2 330 51.2
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 1.7e-77 294.7 284 50.7
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 1.7e-77 294.7 325 48.9
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 3.7e-77 293.5 327 47.7
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 3.7e-77 293.5 328 51.5
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 8.3e-77 292.4 320 48.4
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 8.3e-77 292.4 322 48.8
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 1.4e-76 291.6 325 47.4
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 4.1e-76 290.0 327 48.6
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 5.4e-76 289.7 260 55.4
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 2.1e-75 287.7 295 50.2
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 1.3e-74 285.0 325 47.4
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 3.9e-74 283.5 297 52.2
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 6.6e-74 282.7 340 43.5
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 1.1e-73 282.0 327 46.2
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 2.5e-73 280.8 324 45.7
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 1.8e-71 274.6 342 45.3
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 1.8e-71 274.6 324 47.8
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 8.9e-71 272.3 306 48.7
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 5.8e-70 269.6 319 47.0
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 9.9e-70 268.9 338 43.2
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 9.9e-70 268.9 341 43.7
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 1.7e-69 268.1 338 43.2
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 3.8e-69 266.9 319 46.7
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 1.1e-68 265.4 327 44.3
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 5.4e-68 263.1 321 45.5
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 3.9e-66 256.9 323 44.6
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 1.1e-65 255.4 203 60.1
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 1.6e-64 251.5 345 42.6
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 1.6e-64 251.5 323 43.7
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 6.2e-64 249.6 324 43.5
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 8.1e-64 249.2 337 41.5
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 4.0e-63 246.9 321 42.4
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 1.2e-62 245.4 253 51.4
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 1.5e-62 245.0 320 42.5
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 2.6e-62 244.2 332 40.4
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 3.4e-62 243.8 325 40.6
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 1.3e-61 241.9 254 50.8
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 1.9e-60 238.0 339 40.7
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 5.4e-60 236.5 297 42.8
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 1.6e-59 235.0 334 42.2
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 6.0e-59 233.0 328 40.9
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 7.8e-59 232.6 294 43.5
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 5.1e-58 229.9 329 39.8
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 8.7e-58 229.2 328 40.5
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 1.6e-56 224.9 272 44.5
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 1.8e-55 221.5 260 47.3
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 1.5e-54 218.4 267 41.9
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 1.3e-53 215.3 294 43.5
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 4.9e-53 213.4 325 39.1
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 6.4e-53 213.0 294 43.5
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 1.1e-52 212.2 275 45.1
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.9e-52 211.5 322 41.0
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 9.3e-52 209.1 277 42.6
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 9.3e-52 209.1 245 42.9
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 3.5e-51 207.2 323 39.0
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 4.6e-51 206.8 294 41.8
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 1.3e-50 205.3 266 41.4
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 1.8e-50 204.9 238 43.3
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 2.3e-50 204.5 299 40.5
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 3.0e-50 204.1 315 40.0
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 3.0e-50 204.1 315 40.0
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 3.0e-50 204.1 299 40.1
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 3.1e-47 194.1 276 42.0
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 1.2e-46 192.2 214 48.1
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 1.0e-42 179.1 213 42.7
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 6.7e-42 176.4 276 37.0
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 1.9e-41 174.9 278 36.7
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 9.6e-41 172.6 275 37.1
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 1.5e-38 165.2 275 36.0
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 1.0e-34 152.5 281 34.5
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 2.0e-30 138.3 104 63.5
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 1.3e-29 135.6 156 42.9
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 2.7e-27 127.9 104 57.7
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 1.0e-26 125.9 104 57.7
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 5.7e-25 120.2 106 53.8
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 9.7e-25 119.4 317 31.9
SEGI_25718 Sequoiadendron giganteum HOM05D007280 ORTHO05D009108 4.7e-11 73.9 162 27.8
BcaB07g31660 Brassica carinata HOM05D000891 ORTHO05D000761 1.7e-08 65.5 133 27.8
Carub.0007s0364 Capsella rubella HOM05D000891 ORTHO05D000761 1.2e-06 59.3 160 25.0
BcaB03g12377 Brassica carinata HOM05D000891 ORTHO05D000761 2.0e-06 58.5 150 27.3
SalBow3G4579 Salvia bowleyana HOM05D007280 ORTHO05D009108 5.9e-06 57.0 77 42.9


User provided reference genes

Program Settings