Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 4009.5 2098 100.0
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 3328.9 2099 85.7
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 3321.6 2099 85.5
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 3108.5 2115 78.4
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2589.7 2116 67.3
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2574.3 2116 67.3
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2574.3 2115 67.7
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2543.8 2111 66.8
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2516.9 2105 66.3
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2512.3 2123 65.2
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2507.6 2105 65.4
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2501.9 2109 66.0
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2498.8 2104 65.7
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2497.6 2104 65.7
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2496.5 2109 64.8
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2483.4 2114 65.5
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2470.7 2108 65.7
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2469.1 2109 65.1
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2463.3 2107 65.5
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2460.6 2108 64.8
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2455.2 2206 64.0
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2453.3 2108 65.4
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2451.8 2258 61.6
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2451.0 2101 65.2
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2439.1 2106 64.8
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2438.3 2136 65.3
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2436.0 2123 64.7
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2432.5 2104 64.2
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2427.5 2103 64.5
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2424.8 2104 63.9
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2422.1 2117 63.9
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2418.7 2145 63.9
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2416.0 2108 63.9
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2406.7 2105 64.2
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2404.8 2109 64.2
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2384.4 1886 70.0
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2376.7 2083 64.8
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2369.7 2106 63.7
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2367.0 2110 63.1
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2346.2 2108 62.4
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2310.8 2112 62.1
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2308.5 2168 61.1
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2286.9 2115 60.9
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2286.5 2110 60.1
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2277.3 2112 60.7
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2266.9 2117 60.3
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2265.3 2105 60.8
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2264.2 1923 64.8
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2250.3 2119 61.5
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2250.3 2122 61.5
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2241.5 2114 61.4
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2234.5 2100 59.3
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2233.0 2114 61.3
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2220.3 2074 60.5
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 2201.8 2120 60.5
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2198.3 2118 60.5
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2197.5 2120 60.9
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2196.8 2114 59.6
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2191.4 2098 59.7
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2183.3 2124 60.1
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2181.8 2103 59.3
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2179.8 2110 58.9
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2159.8 2100 59.0
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2159.4 2124 59.8
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2158.3 1888 63.9
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2152.9 2111 57.5
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2149.4 2106 59.8
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2140.9 1943 63.0
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2112.0 2106 58.8
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2109.0 2113 57.4
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2108.2 2112 59.2
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2107.0 2110 58.5
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2104.3 2109 58.2
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2093.5 2079 58.3
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2082.4 2106 58.4
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2079.7 2012 59.2
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2073.1 2147 57.5
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 2070.8 2107 57.7
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 2067.7 2106 57.8
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2066.6 2107 58.0
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2063.5 2106 58.2
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2055.0 2143 56.2
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2047.7 2113 58.4
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 2044.6 2116 56.1
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 2043.9 2085 57.6
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1956.4 2110 55.8
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1889.4 1590 63.5
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1849.7 1665 62.8
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1840.5 1656 63.5
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1794.2 2101 50.7
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1733.4 2207 49.5
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1662.1 2194 47.7
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1588.5 2115 47.7
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1588.5 2057 47.8
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1536.9 1223 70.4
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1525.8 2119 47.4
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1401.3 1147 65.4
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1377.1 1417 58.8
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1377.1 1422 57.9
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1337.4 1256 61.1
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1289.2 1644 50.3
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1280.4 1232 60.3
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 0.0e+00 1196.4 1097 65.0
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1119.8 1061 58.2
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1119.4 1089 57.5
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 3.5e-300 1036.2 1149 55.9
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 1.7e-291 1007.3 736 70.7
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 7.1e-285 985.3 696 74.6
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 1.9e-282 977.2 1495 40.5
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 9.3e-261 905.2 871 62.8
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 7.7e-223 779.2 985 52.3
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 1.7e-222 778.1 1142 45.4
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 4.4e-194 683.7 1496 32.8
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 6.0e-191 673.3 598 63.9
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 6.0e-159 567.0 435 66.2
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 7.9e-143 513.5 427 62.8
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 4.3e-133 481.1 430 60.5
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 1.8e-131 475.7 1454 29.2
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 9.1e-131 473.4 428 59.1
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 9.1e-107 393.7 548 46.4
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 8.8e-102 377.1 566 47.3
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 7.5e-101 374.0 361 55.4
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 4.4e-93 348.2 298 63.8
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 1.6e-90 339.7 525 50.5
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 4.3e-88 331.6 240 72.1
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 4.0e-86 325.1 198 81.3
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 9.2e-83 313.9 263 65.4
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 1.9e-72 279.6 1627 23.3
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 2.5e-72 279.3 362 45.3
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 7.5e-69 267.7 169 76.3
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 3.0e-65 255.8 1594 21.5
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 4.3e-64 251.9 325 46.2
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 6.8e-62 244.6 231 61.0
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 4.4e-53 215.3 163 63.2
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 5.8e-53 214.9 170 60.6
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.9e-51 209.9 246 50.4
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.5e-48 199.5 297 43.4
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 1.4e-46 193.7 249 46.6
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.4e-46 193.0 337 43.0
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 3.1e-46 192.6 417 39.1
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 7.1e-43 181.4 224 50.4
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 5.3e-38 165.2 105 74.3
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 6.9e-38 164.9 215 48.4
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 9.9e-37 161.0 89 83.1
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.2e-34 154.1 121 67.8
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 1.3e-28 134.0 109 70.6
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 4.9e-28 132.1 75 92.0
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 2.5e-27 129.8 152 52.0
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 3.2e-27 129.4 87 67.8
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 2.1e-26 126.7 149 53.0
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 1.0e-25 124.4 82 76.8
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 3.0e-25 122.9 69 91.3
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 1.8e-22 113.6 87 60.9
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 2.6e-21 109.8 61 85.2
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 8.5e-20 104.8 105 55.2
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 4.6e-18 99.0 128 49.2
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 6.1e-18 98.6 59 84.7
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 1.0e-17 97.8 69 72.5
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 1.0e-17 97.8 69 72.5
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 3.9e-17 95.9 86 53.5
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 8.8e-17 94.7 69 71.0
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 2.8e-15 89.7 77 58.4
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 1.1e-14 87.8 48 89.6
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 9.1e-14 84.7 73 58.9
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 1.5e-13 84.0 41 95.1
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 2.9e-12 79.7 36 97.2
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 2.5e-11 76.6 53 71.7
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 4.2e-11 75.9 76 56.6
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 2.1e-10 73.6 47 76.6
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 2.7e-10 73.2 50 80.0
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 2.0e-08 67.0 69 47.8
TAR371G1101 Trochodendron aralioides HOM05D003986 ORTHO05D004916 8.2e-07 61.6 105 37.1
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 1.1e-06 61.2 57 59.6
Sed0003400 Sechium edule HOM05D003986 ORTHO05D373333 1.1e-06 61.2 30 90.0


User provided reference genes

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