Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G006330 Citrullus lanatus HOM05D002884 ORTHO05D003178 1.3e-100 369.8 188 100.0
ClCG00G001160 Citrullus lanatus HOM05D002884 ORTHO05D003178 4.5e-90 334.7 173 97.1
ClCG10G003770 Citrullus lanatus HOM05D002884 ORTHO05D003178 8.5e-89 330.5 173 96.0
ClCG00G000910 Citrullus lanatus HOM05D002884 ORTHO05D003178 3.9e-86 321.6 185 89.7
MELO3C014057.2 Cucumis melo HOM05D002884 ORTHO05D003178 4.1e-83 311.6 188 83.0
CsaV3_3G003750 Cucumis sativus L. HOM05D002884 ORTHO05D003178 2.9e-81 305.4 188 82.4
Sed0001920 Sechium edule HOM05D002884 ORTHO05D003178 1.2e-71 273.5 188 72.9
Sed0021874 Sechium edule HOM05D002884 ORTHO05D003178 3.6e-39 165.6 125 69.6
Dinv39004 Davidia involucrata HOM05D002884 ORTHO05D003178 1.2e-31 140.6 197 46.7
ClCG10G003780 Citrullus lanatus HOM05D002884 ORTHO05D003178 2.8e-31 139.4 70 95.7
Haze_08941 Corylus avellana HOM05D002884 ORTHO05D003178 4.4e-29 132.1 195 44.1
Hma1.2p1_0514F.1_g170040 Hydrangea macrophylla HOM05D002884 ORTHO05D003178 8.4e-28 127.9 192 41.7
Actinidia14527 Actinidia chinensis HOM05D002884 ORTHO05D003178 1.9e-27 126.7 195 41.0
CSS0002116 Camellia sinensis var. sinensis HOM05D002884 ORTHO05D003178 1.9e-27 126.7 195 41.5
Prupe.5G091800 Prunus persica HOM05D002884 ORTHO05D003178 4.1e-27 125.6 194 42.3
Glyma.05G049200 Glycine max HOM05D002884 ORTHO05D003178 1.2e-26 124.0 180 42.2
Cfa012110 Carpinus fangiana HOM05D002884 ORTHO05D003178 6.0e-26 121.7 195 43.1
GSVIVG01019815001 Vitis vinifera HOM05D002884 ORTHO05D003178 3.0e-25 119.4 197 40.1
Phvul.003G212000 Phaseolus vulgaris HOM05D002884 ORTHO05D003178 1.9e-24 116.7 156 44.9
VMungo1215G1054 Vigna mungo HOM05D002884 ORTHO05D003178 1.9e-24 116.7 156 46.2
Glyma.17G131100 Glycine max HOM05D002884 ORTHO05D003178 3.3e-24 115.9 156 44.9
CiPaw.11G140600 Carya illinoinensis HOM05D002884 ORTHO05D003178 1.6e-23 113.6 195 42.6
CSS0004594 Camellia sinensis var. sinensis HOM05D002884 ORTHO05D003178 2.8e-23 112.8 182 42.9
Lalb_Chr16g0389741 Lupinus albus HOM05D002884 ORTHO05D003178 2.8e-23 112.8 183 38.3
Lalb_Chr16g0377211 Lupinus albus HOM05D002884 ORTHO05D003178 3.6e-23 112.5 182 40.1
MD04G1066700 Malus domestica HOM05D002884 ORTHO05D003178 3.6e-23 112.5 198 41.4
arahy.Tifrunner.gnm1.ann1.00WUVK Arachis hypogaea HOM05D002884 ORTHO05D003178 8.1e-23 111.3 183 38.3
arahy.Tifrunner.gnm1.ann1.2WQF85 Arachis hypogaea HOM05D002884 ORTHO05D003178 8.1e-23 111.3 183 38.3
CANSAT21G2344 Cannabis sativa HOM05D002884 ORTHO05D003178 8.1e-23 111.3 193 38.9
MD06G1073600 Malus domestica HOM05D002884 ORTHO05D003178 6.9e-22 108.2 198 39.4
MBI12_g29747_MAGBIO Magnolia biondii HOM05D002884 ORTHO05D003178 9.0e-22 107.8 148 44.6
TAR636G2592 Trochodendron aralioides HOM05D002884 ORTHO05D003178 1.5e-21 107.1 195 38.5
Ca_20250_v3 Cicer arietinum L. HOM05D002884 ORTHO05D003178 1.3e-20 104.0 183 38.3
QL12p017410 Quercus lobata HOM05D002884 ORTHO05D003178 1.7e-20 103.6 193 38.3
TAR629G3349 Trochodendron aralioides HOM05D002884 ORTHO05D003178 2.2e-20 103.2 195 38.5
Lalb_Chr05g0225031 Lupinus albus HOM05D002884 ORTHO05D003178 3.8e-20 102.4 139 47.5
DCAR_004672 Daucus carota HOM05D002884 ORTHO05D003178 4.9e-20 102.1 182 39.6
FAN08G2255 Fragaria x ananassa HOM05D002884 ORTHO05D003178 8.4e-20 101.3 193 36.8
Aqoxy7G00426 Aquilegia oxysepala HOM05D002884 ORTHO05D003178 1.4e-19 100.5 193 38.9
Nn6g34230 Nelumbo nucifera HOM05D002884 ORTHO05D003178 1.9e-19 100.1 202 37.1
TAR629G1766 Trochodendron aralioides HOM05D002884 ORTHO05D003178 1.9e-19 100.1 195 37.9
TAR375G0217 Trochodendron aralioides HOM05D002884 ORTHO05D003178 2.4e-19 99.8 208 33.2
Lj8A238T60 Lonicera japonica HOM05D002884 ORTHO05D003178 3.2e-19 99.4 195 39.0
Lalb_Chr09g0321151 Lupinus albus HOM05D002884 ORTHO05D003178 5.4e-19 98.6 182 38.5
PGR042G2076 Punica granatum HOM05D002884 ORTHO05D003178 9.3e-19 97.8 188 38.3
RcHm_v2.0_Chr7g0199121 Rosa chinensis HOM05D002884 ORTHO05D003178 9.3e-19 97.8 193 36.8
vmacro00201 Vaccinium macrocarpon HOM05D002884 ORTHO05D003178 2.1e-18 96.7 183 37.7
COL.COLO4_05264 Corchorus olitorius HOM05D002884 ORTHO05D003178 2.7e-18 96.3 184 38.0
Eucgr.E00535 Eucalyptus grandis HOM05D002884 ORTHO05D003178 3.5e-18 95.9 190 38.4
CAN.G981.24 Capsicum annuum HOM05D002884 ORTHO05D003178 4.6e-18 95.5 193 40.4
FAN08G3344 Fragaria x ananassa HOM05D002884 ORTHO05D003178 4.6e-18 95.5 193 36.8
FAN18G2326 Fragaria x ananassa HOM05D002884 ORTHO05D003178 4.6e-18 95.5 193 36.8
Oeu011663.1 Olea europaea HOM05D002884 ORTHO05D003178 4.6e-18 95.5 188 43.6
CiPaw.12G097600 Carya illinoinensis HOM05D002884 ORTHO05D003178 6.0e-18 95.1 183 36.6
FAN04G2772 Fragaria x ananassa HOM05D002884 ORTHO05D003178 1.0e-17 94.4 194 36.6
Lj2g0016961 Lotus japonicus HOM05D002884 ORTHO05D003178 1.0e-17 94.4 188 35.6
Oeu031597.1 Olea europaea HOM05D002884 ORTHO05D003178 1.0e-17 94.4 192 40.1
FAN13G0317 Fragaria x ananassa HOM05D002884 ORTHO05D003178 1.3e-17 94.0 194 36.1
TPR.G19228 Trifolium pratense HOM05D002884 ORTHO05D003178 1.3e-17 94.0 187 37.4
THA.LOC104806375 Tarenaya hassleriana HOM05D002884 ORTHO05D003178 3.0e-17 92.8 188 36.2
Atru.chr9.1548 Acer truncatum HOM05D002884 ORTHO05D003178 5.1e-17 92.0 190 36.8
Cpa.g.sc74.81 Carica papaya HOM05D002884 ORTHO05D003178 5.1e-17 92.0 191 37.2
Nitab4.5_0002234g0060 Nicotiana tabacum HOM05D002884 ORTHO05D003178 5.1e-17 92.0 185 38.4
THA.LOC104814310 Tarenaya hassleriana HOM05D002884 ORTHO05D003178 6.6e-17 91.7 189 35.4
FvH4_5g01560 Fragaria vesca HOM05D002884 ORTHO05D003178 8.7e-17 91.3 193 35.8
TWI81G0934 Tripterygium wilfordii HOM05D002884 ORTHO05D003178 1.5e-16 90.5 190 37.4
Cc08_g14060 Coffea canephora HOM05D002884 ORTHO05D003178 3.3e-16 89.4 163 40.5
Rhsim11G0003600 Rhododendron simsii HOM05D002884 ORTHO05D003178 3.3e-16 89.4 184 39.7
Hma1.2p1_0371F.1_g138100 Hydrangea macrophylla HOM05D002884 ORTHO05D003178 4.3e-16 89.0 193 36.8
Duzib205G1004 Durio zibethinus HOM05D002884 ORTHO05D003178 5.6e-16 88.6 190 37.9
Potri.001G109500 Populus trichocarpa HOM05D002884 ORTHO05D003178 5.6e-16 88.6 191 36.6
Oeu059065.2 Olea europaea HOM05D002884 ORTHO05D003178 9.6e-16 87.8 196 35.7
Ciclev10019482m.g Citrus clementina HOM05D002884 ORTHO05D003178 1.6e-15 87.0 192 37.5
Medtr4g102810 Medicago truncatula HOM05D002884 ORTHO05D003178 1.6e-15 87.0 186 34.4
Carub.0006s3083 Capsella rubella HOM05D002884 ORTHO05D003178 2.1e-15 86.7 189 35.4
ATR0757G204 Amborella trichopoda HOM05D002884 ORTHO05D003178 2.8e-15 86.3 119 47.1
AUR62017287 Chenopodium quinoa HOM05D002884 ORTHO05D003178 2.8e-15 86.3 197 35.5
Thecc.03G272100 Theobroma cacao HOM05D002884 ORTHO05D003178 3.6e-15 85.9 193 36.3
Sp6g05690 Schrenkiella parvula HOM05D002884 ORTHO05D003178 8.1e-15 84.7 188 33.5
Os08g0546400 Oryza sativa ssp. japonica HOM05D002884 ORTHO05D003178 1.1e-14 84.3 111 45.0
Os09g0525600 Oryza sativa ssp. japonica HOM05D002884 ORTHO05D003178 1.1e-14 84.3 110 46.4
DCAR_006758 Daucus carota HOM05D002884 ORTHO05D003178 1.4e-14 84.0 181 36.5
PSO782G3187 Papaver somniferum HOM05D002884 ORTHO05D003178 1.4e-14 84.0 196 35.2
Potri.003G122300 Populus trichocarpa HOM05D002884 ORTHO05D003178 3.1e-14 82.8 189 36.0
CARHR254610 Cardamine hirsuta HOM05D002884 ORTHO05D003178 5.3e-14 82.0 173 37.6
Manes.01G066200 Manihot esculenta HOM05D002884 ORTHO05D003178 5.3e-14 82.0 116 44.8
Zm00001eb198600 Zea mays HOM05D002884 ORTHO05D003178 5.3e-14 82.0 111 45.9
AL6G46330 Arabidopsis lyrata HOM05D002884 ORTHO05D003178 6.9e-14 81.6 110 45.5
Peaxi162Scf00714g00057 Petunia axillaris HOM05D002884 ORTHO05D003178 6.9e-14 81.6 167 39.5
Sabra01G0082800 Salix brachista HOM05D002884 ORTHO05D003178 6.9e-14 81.6 187 34.2
Nitab4.5_0002853g0040 Nicotiana tabacum HOM05D002884 ORTHO05D003178 1.2e-13 80.9 162 39.5
Oeu048784.1 Olea europaea HOM05D002884 ORTHO05D003178 1.2e-13 80.9 191 36.1
TWI60G1702 Tripterygium wilfordii HOM05D002884 ORTHO05D003178 1.2e-13 80.9 189 34.4
AT4G11740 Arabidopsis thaliana HOM05D002884 ORTHO05D003178 1.5e-13 80.5 190 33.7
Thhalv10028549m.g Eutrema salsugineum HOM05D002884 ORTHO05D003178 2.0e-13 80.1 192 34.9
PSO478G0346 Papaver somniferum HOM05D002884 ORTHO05D003178 2.0e-13 80.1 194 34.5
unitig_26.g9695 Utricularia gibba HOM05D002884 ORTHO05D003178 2.0e-13 80.1 158 36.1
Sc01g0008750 Simmondsia chinensis HOM05D002884 ORTHO05D003178 2.6e-13 79.7 188 35.6
EL10Ac5g12735 Beta vulgaris HOM05D002884 ORTHO05D003178 3.4e-13 79.3 111 44.1
Psat4g066960 Pisum sativum HOM05D002884 ORTHO05D003178 3.4e-13 79.3 186 34.4
Sabra03G0086200 Salix brachista HOM05D002884 ORTHO05D003178 4.5e-13 79.0 120 44.2
Zm00001eb103170 Zea mays HOM05D002884 ORTHO05D003178 4.5e-13 79.0 112 46.4
AL7G30460 Arabidopsis lyrata HOM05D002884 ORTHO05D003178 5.8e-13 78.6 112 43.8
SGA_v2.0_scaffold144G35971 Striga asiatica HOM05D002884 ORTHO05D003178 7.6e-13 78.2 149 39.6
AT4G23040 Arabidopsis thaliana HOM05D002884 ORTHO05D003178 9.9e-13 77.8 148 35.1
Hund11525 Selenicereus undatus HOM05D002884 ORTHO05D003178 1.3e-12 77.4 190 36.8
PGSC0003DMG400003048 Solanum tuberosum HOM05D002884 ORTHO05D003178 1.3e-12 77.4 160 38.1
MSTRG.12015 Avicennia marina HOM05D002884 ORTHO05D003178 1.7e-12 77.0 177 37.9
Solyc08g080410.3 Solanum lycopersicum HOM05D002884 ORTHO05D003178 1.7e-12 77.0 160 38.8
BcaB01g01676 Brassica carinata HOM05D002884 ORTHO05D003178 3.8e-12 75.9 191 32.5
Sopen08g028740 Solanum pennellii HOM05D002884 ORTHO05D003178 8.4e-12 74.7 160 37.5
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 1.1e-11 74.3 110 43.6
BcaNung06111 Brassica carinata HOM05D002884 ORTHO05D003178 1.1e-11 74.3 190 33.2
C09p34700 Brassica napus HOM05D002884 ORTHO05D003178 1.1e-11 74.3 190 33.2
BolC9t56316H Brassica oleracea HOM05D002884 ORTHO05D003178 1.1e-11 74.3 190 33.2
Zm00001eb319030 Zea mays HOM05D002884 ORTHO05D003178 2.4e-11 73.2 112 45.5
Duzib068G1440 Durio zibethinus HOM05D002884 ORTHO05D003178 3.2e-11 72.8 204 33.8
Nn1g01376 Nelumbo nucifera HOM05D002884 ORTHO05D003178 4.2e-11 72.4 196 33.2
Dinv37683 Davidia involucrata HOM05D002884 ORTHO05D003178 7.1e-11 71.6 61 55.7
Gohir.D12G228000 Gossypium hirsutum HOM05D002884 ORTHO05D003178 7.1e-11 71.6 194 33.0
Gohir.A12G225400 Gossypium hirsutum HOM05D002884 ORTHO05D003178 1.2e-10 70.9 193 32.6
Gorai.008G244000 Gossypium raimondii HOM05D002884 ORTHO05D003178 1.2e-10 70.9 194 33.0
SGA_v2.0_scaffold385G50454 Striga asiatica HOM05D002884 ORTHO05D003178 1.2e-10 70.9 173 37.0
Sc22g0000260 Simmondsia chinensis HOM05D002884 ORTHO05D003178 1.6e-10 70.5 111 41.4
A09p27380 Brassica napus HOM05D002884 ORTHO05D003178 6.0e-10 68.6 191 31.9
Hund11524 Selenicereus undatus HOM05D002884 ORTHO05D003178 6.0e-10 68.6 111 45.9
Ah.12g057580 Amaranthus hybridus HOM05D002884 ORTHO05D003178 1.3e-09 67.4 113 44.2
Lsat_1_v5_gn_6_87540 Lactuca sativa HOM05D002884 ORTHO05D003178 1.3e-09 67.4 189 37.0
ECA240G2117 Erigeron canadensis HOM05D002884 ORTHO05D003178 1.8e-09 67.0 189 34.9
HanXRQChr13g0416781 Helianthus annuus HOM05D002884 ORTHO05D003178 2.3e-09 66.6 205 30.7
Lsat_1_v5_gn_6_49340 Lactuca sativa HOM05D002884 ORTHO05D003178 2.3e-09 66.6 111 45.0
BraA09t38307Z Brassica rapa HOM05D002884 ORTHO05D003178 3.0e-09 66.2 110 40.9
AUR62010645 Chenopodium quinoa HOM05D002884 ORTHO05D003178 8.7e-09 64.7 167 34.7
Carub.0007s1823 Capsella rubella HOM05D002884 ORTHO05D003178 1.1e-08 64.3 112 36.6
SHI09624 Sapria himalayana HOM05D002884 ORTHO05D003178 3.3e-08 62.8 189 32.3
Dinv37684 Davidia involucrata HOM05D002884 ORTHO05D003178 1.3e-07 60.8 94 38.3
Migut.E01291 Erythranthe guttata HOM05D002884 ORTHO05D003178 1.3e-07 60.8 111 39.6
MBI04_g00304_MAGBIO Magnolia biondii HOM05D002884 ORTHO05D003178 1.3e-07 60.8 158 32.9
Rhsim07G0094100 Rhododendron simsii HOM05D002884 ORTHO05D003178 3.7e-07 59.3 192 29.2
CDE12G0835 Ceratophyllum demersum HOM05D002884 ORTHO05D003178 4.8e-07 58.9 183 30.6
Gohir.A09G193001 Gossypium hirsutum HOM05D002884 ORTHO05D003178 1.4e-06 57.4 171 32.2
HPP92_022611 Vanilla planifolia HOM05D002884 ORTHO05D003178 1.4e-06 57.4 157 36.9
Gohir.D09G187200 Gossypium hirsutum HOM05D002884 ORTHO05D003178 3.1e-06 56.2 171 29.2
Gorai.006G210000 Gossypium raimondii HOM05D002884 ORTHO05D003178 4.0e-06 55.8 171 29.2
Migut.A00926 Erythranthe guttata HOM05D002884 ORTHO05D003178 6.9e-06 55.1 159 35.2


User provided reference genes

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