Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.0e-76 288.9 136 100.0
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 4.1e-69 264.6 126 97.6
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 4.6e-68 261.2 126 96.0
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 4.3e-66 254.6 126 93.7
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.9e-62 241.9 113 100.0
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 2.5e-58 228.8 126 81.7
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 7.3e-58 227.3 126 80.2
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 6.2e-57 224.2 126 80.2
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 6.2e-57 224.2 126 80.2
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 1.1e-56 223.4 118 83.9
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 1.8e-56 222.6 126 78.6
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 3.1e-56 221.9 126 77.8
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 5.2e-56 221.1 131 74.0
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 9.0e-56 220.3 128 79.7
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.2e-55 219.9 126 77.8
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 4.4e-55 218.0 126 77.8
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 7.6e-55 217.2 126 77.8
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 9.9e-55 216.9 126 77.8
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 2.2e-54 215.7 121 80.2
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 3.8e-54 214.9 126 77.0
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 4.9e-54 214.5 126 77.8
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 4.9e-54 214.5 131 72.5
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 4.9e-54 214.5 126 75.4
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 1.1e-53 213.4 126 77.8
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 2.4e-53 212.2 126 77.0
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 2.4e-53 212.2 126 77.8
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 2.4e-53 212.2 126 75.4
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 3.2e-53 211.8 125 79.2
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 3.2e-53 211.8 126 76.2
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 4.2e-53 211.5 126 75.4
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 7.1e-53 210.7 126 77.0
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 9.3e-53 210.3 125 78.4
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 9.3e-53 210.3 118 76.3
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 1.2e-52 209.9 125 78.4
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 1.2e-52 209.9 125 78.4
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 1.6e-52 209.5 125 77.6
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 1.6e-52 209.5 121 76.9
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 3.5e-52 208.4 126 75.4
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 3.5e-52 208.4 126 74.6
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 4.6e-52 208.0 126 74.6
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 6.0e-52 207.6 126 74.6
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 6.0e-52 207.6 126 74.6
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 6.0e-52 207.6 125 76.0
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 6.0e-52 207.6 126 73.8
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 1.0e-51 206.8 125 77.6
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 1.0e-51 206.8 125 77.6
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 1.0e-51 206.8 125 77.6
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 1.0e-51 206.8 121 74.4
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 1.3e-51 206.5 121 75.2
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 1.3e-51 206.5 121 75.2
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 1.3e-51 206.5 126 73.0
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 1.7e-51 206.1 126 72.2
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 1.7e-51 206.1 126 76.2
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 1.7e-51 206.1 125 74.4
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 3.0e-51 205.3 118 74.6
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 3.0e-51 205.3 126 73.8
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 3.0e-51 205.3 118 76.3
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 8.7e-51 203.8 113 75.2
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.1e-50 203.4 126 75.4
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 1.1e-50 203.4 126 73.8
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 1.1e-50 203.4 126 73.8
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 1.1e-50 203.4 126 73.8
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 1.1e-50 203.4 126 73.8
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 1.5e-50 203.0 126 75.4
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 1.5e-50 203.0 121 74.4
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 1.5e-50 203.0 126 71.4
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 1.9e-50 202.6 121 76.0
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 1.9e-50 202.6 126 71.4
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 2.5e-50 202.2 126 76.2
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 2.5e-50 202.2 121 73.6
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 3.3e-50 201.8 132 67.4
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 5.6e-50 201.1 125 76.0
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 5.6e-50 201.1 118 75.4
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 5.6e-50 201.1 125 74.4
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 5.6e-50 201.1 121 71.9
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 7.3e-50 200.7 118 73.7
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 9.6e-50 200.3 118 72.9
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.6e-49 199.5 113 75.2
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 2.1e-49 199.1 121 71.9
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 4.8e-49 198.0 121 72.7
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 6.2e-49 197.6 113 75.2
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 8.1e-49 197.2 126 73.0
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 1.4e-48 196.4 133 65.4
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 1.8e-48 196.1 126 69.8
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 1.8e-48 196.1 121 71.1
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 2.4e-48 195.7 126 73.0
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 2.4e-48 195.7 126 73.0
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 3.1e-48 195.3 126 71.4
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 5.3e-48 194.5 126 72.2
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 9.0e-48 193.7 127 73.2
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 1.2e-47 193.4 126 66.7
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 1.2e-47 193.4 126 73.0
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 1.2e-47 193.4 126 71.4
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 1.5e-47 193.0 126 69.0
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 5.8e-47 191.0 126 69.0
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 7.6e-47 190.7 126 70.6
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 7.6e-47 190.7 126 66.7
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 1.4e-45 186.4 126 70.6
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 5.4e-45 184.5 126 68.3
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 7.1e-45 184.1 126 66.7
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 9.3e-45 183.7 126 68.3
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 2.1e-44 182.6 126 67.5
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 2.1e-44 182.6 126 64.3
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 2.7e-44 182.2 126 67.5
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 4.6e-44 181.4 126 67.5
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 6.0e-44 181.0 126 67.5
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 6.0e-44 181.0 126 67.5
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 6.0e-44 181.0 124 67.7
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 7.9e-44 180.6 92 84.8
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 1.3e-43 179.9 126 67.5
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 6.7e-43 177.6 118 67.8
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 8.7e-43 177.2 126 65.9
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 3.3e-42 175.3 116 62.9
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 4.0e-40 168.3 118 60.2
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.7e-36 155.6 118 63.6
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 4.6e-36 154.8 126 54.8
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 1.0e-30 137.1 118 47.5
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 1.1e-29 133.7 118 54.2
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 2.5e-29 132.5 118 45.8
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 2.1e-28 129.4 86 65.1
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 6.0e-28 127.9 126 47.6
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 2.4e-24 115.9 117 43.6
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 6.7e-19 97.8 66 72.7
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.0e-15 86.3 57 68.4
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.6e-15 85.9 82 52.4
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 6.1e-12 74.7 116 37.9
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 6.7e-11 71.2 78 46.2
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 2.0e-10 69.7 139 34.5
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 5.7e-10 68.2 42 66.7
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 1.7e-09 66.6 43 65.1
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.5e-07 60.1 32 75.0
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 2.0e-07 59.7 51 52.9
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 4.5e-07 58.5 50 50.0
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 6.5e-06 54.7 41 51.2


User provided reference genes

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