Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G005040 Citrullus lanatus HOM05D001780 ORTHO05D005322 2.7e-135 485.3 247 100.0
ClCG05G006110 Citrullus lanatus HOM05D001780 ORTHO05D005322 1.9e-128 462.6 284 87.0
CsaV3_3G014640 Cucumis sativus L. HOM05D001780 ORTHO05D005322 9.4e-120 433.7 305 77.4
Sed0021413 Sechium edule HOM05D001780 ORTHO05D005322 3.7e-116 421.8 305 75.4
Cfa015386 Carpinus fangiana HOM05D001780 ORTHO05D005322 3.0e-86 322.4 302 60.3
CANSAT78G1960 Cannabis sativa HOM05D001780 ORTHO05D005322 5.7e-85 318.2 301 59.1
CiPaw.01G148500 Carya illinoinensis HOM05D001780 ORTHO05D005322 1.3e-84 317.0 305 59.3
Gohir.D09G080700 Gossypium hirsutum HOM05D001780 ORTHO05D005322 2.2e-84 316.2 302 57.9
Thecc.02G218100 Theobroma cacao HOM05D001780 ORTHO05D005322 2.2e-84 316.2 302 57.9
Gorai.006G096300 Gossypium raimondii HOM05D001780 ORTHO05D005322 6.3e-84 314.7 302 57.6
Haze_01199 Corylus avellana HOM05D001780 ORTHO05D005322 5.4e-83 311.6 347 54.2
PGR004G0386 Punica granatum HOM05D001780 ORTHO05D005322 2.9e-81 305.8 302 57.9
RcHm_v2.0_Chr4g0422271 Rosa chinensis HOM05D001780 ORTHO05D005322 8.6e-81 304.3 299 57.5
Gohir.A09G080700 Gossypium hirsutum HOM05D001780 ORTHO05D005322 1.5e-80 303.5 302 56.0
Thhalv10003524m.g Eutrema salsugineum HOM05D001780 ORTHO05D005322 2.5e-80 302.8 284 59.9
MD13G1168400 Malus domestica HOM05D001780 ORTHO05D005322 3.3e-80 302.4 299 57.2
QL06p008943 Quercus lobata HOM05D001780 ORTHO05D005322 5.5e-80 301.6 285 60.4
CARHR182680 Cardamine hirsuta HOM05D001780 ORTHO05D005322 1.2e-79 300.4 284 59.5
Carub.0008s0885 Capsella rubella HOM05D001780 ORTHO05D005322 1.6e-79 300.1 284 59.2
THA.LOC104818925 Tarenaya hassleriana HOM05D001780 ORTHO05D005322 2.1e-79 299.7 284 58.8
MD16G1168800 Malus domestica HOM05D001780 ORTHO05D005322 2.8e-79 299.3 299 56.9
TWI09G1280 Tripterygium wilfordii HOM05D001780 ORTHO05D005322 2.8e-79 299.3 302 57.0
Ciclev10004211m.g Citrus clementina HOM05D001780 ORTHO05D005322 6.1e-79 298.1 297 56.6
Solyc01g080810.3 Solanum lycopersicum HOM05D001780 ORTHO05D005322 1.4e-78 297.0 296 56.4
PGSC0003DMG400006289 Solanum tuberosum HOM05D001780 ORTHO05D005322 1.8e-78 296.6 279 58.8
Sp2g19410 Schrenkiella parvula HOM05D001780 ORTHO05D005322 2.3e-78 296.2 284 58.8
Nitab4.5_0000700g0090 Nicotiana tabacum HOM05D001780 ORTHO05D005322 5.2e-78 295.0 279 58.1
A06p38600 Brassica napus HOM05D001780 ORTHO05D005322 6.8e-78 294.7 284 58.5
Peaxi162Scf00048g01820 Petunia axillaris HOM05D001780 ORTHO05D005322 6.8e-78 294.7 279 58.8
Prupe.1G136500 Prunus persica HOM05D001780 ORTHO05D005322 1.2e-77 293.9 285 57.5
Nitab4.5_0000059g0580 Nicotiana tabacum HOM05D001780 ORTHO05D005322 2.6e-77 292.7 278 57.9
AL8G22410 Arabidopsis lyrata HOM05D001780 ORTHO05D005322 4.4e-77 292.0 284 58.5
FAN17G0722 Fragaria x ananassa HOM05D001780 ORTHO05D005322 7.5e-77 291.2 287 57.5
AT5G49030 Arabidopsis thaliana HOM05D001780 ORTHO05D005322 9.8e-77 290.8 305 55.1
FAN07G2352 Fragaria x ananassa HOM05D000639 ORTHO05D005322 9.8e-77 290.8 289 57.1
TAR362G0169 Trochodendron aralioides HOM05D001780 ORTHO05D005322 1.3e-76 290.4 296 56.4
AL8G22430 Arabidopsis lyrata HOM05D001780 ORTHO05D005322 1.7e-76 290.0 289 57.4
C07p39660 Brassica napus HOM05D001780 ORTHO05D005322 2.2e-76 289.7 289 57.1
SGA_v2.0_scaffold67G22635 Striga asiatica HOM05D001780 ORTHO05D005322 2.2e-76 289.7 257 59.9
BolC7t44489H Brassica oleracea HOM05D001780 ORTHO05D005322 6.3e-76 288.1 300 55.3
FAN12G3693 Fragaria x ananassa HOM05D001780 ORTHO05D005322 1.8e-75 286.6 300 55.3
VMungo1215G2474 Vigna mungo HOM05D001780 ORTHO05D005322 2.4e-75 286.2 302 55.6
FAN12G1911 Fragaria x ananassa HOM05D001780 ORTHO05D005322 5.4e-75 285.0 300 55.0
Phvul.003G105600 Phaseolus vulgaris HOM05D001780 ORTHO05D005322 5.4e-75 285.0 302 56.0
Glyma.17G026600 Glycine max HOM05D001780 ORTHO05D005322 7.0e-75 284.6 302 55.3
Dinv29743 Davidia involucrata HOM05D001780 ORTHO05D005322 9.2e-75 284.3 271 59.4
FvH4_4g18060 Fragaria vesca HOM05D001780 ORTHO05D005322 2.0e-74 283.1 276 57.6
Sopen01g030670 Solanum pennellii HOM05D001780 ORTHO05D005322 2.7e-74 282.7 296 54.4
Migut.G00161 Erythranthe guttata HOM05D001780 ORTHO05D005322 3.5e-74 282.3 283 56.9
Psat1g153920 Pisum sativum HOM05D001780 ORTHO05D005322 4.6e-74 282.0 280 57.1
Potri.010G014500 Populus trichocarpa HOM05D001780 ORTHO05D005322 4.6e-74 282.0 300 55.0
CAN.G185.34 Capsicum annuum HOM05D001780 ORTHO05D005322 5.9e-74 281.6 279 55.9
BolC2t11771H Brassica oleracea HOM05D001780 ORTHO05D005322 1.3e-73 280.4 291 55.0
PSO210G4510 Papaver somniferum HOM05D001780 ORTHO05D005322 1.3e-73 280.4 279 56.3
C02p57010 Brassica napus HOM05D001780 ORTHO05D005322 1.7e-73 280.0 291 55.0
Lalb_Chr15g0083491 Lupinus albus HOM05D001780 ORTHO05D005322 6.6e-73 278.1 303 53.8
Manes.03G195400 Manihot esculenta HOM05D001780 ORTHO05D005322 1.1e-72 277.3 291 57.0
PSO170G3623 Papaver somniferum HOM05D001780 ORTHO05D005322 1.1e-72 277.3 279 56.3
Eucgr.H03916 Eucalyptus grandis HOM05D001780 ORTHO05D005322 1.5e-72 276.9 280 56.4
SalBow2G1454 Salvia bowleyana HOM05D001780 ORTHO05D005322 3.3e-72 275.8 286 55.6
Ca_01936_v3 Cicer arietinum L. HOM05D001780 ORTHO05D005322 3.6e-71 272.3 280 55.7
Lj6g0027734 Lotus japonicus HOM05D001780 ORTHO05D005322 3.6e-71 272.3 300 54.7
Aa31sc180G20 Aethionema arabicum HOM05D001780 ORTHO05D005322 1.0e-70 270.8 262 57.6
HanXRQChr03g0080971 Helianthus annuus HOM05D001780 ORTHO05D005322 1.0e-70 270.8 276 55.8
Medtr2g436760 Medicago truncatula HOM05D001780 ORTHO05D005322 1.0e-70 270.8 280 55.4
DCAR_002465 Daucus carota HOM05D001780 ORTHO05D005322 5.2e-70 268.5 306 52.3
MBI19_g44149_MAGBIO Magnolia biondii HOM05D001780 ORTHO05D005322 5.2e-70 268.5 223 64.1
Nn3g18527 Nelumbo nucifera HOM05D001780 ORTHO05D005322 5.2e-70 268.5 272 56.6
arahy.Tifrunner.gnm1.ann1.I7AL06 Arachis hypogaea HOM05D001780 ORTHO05D005322 8.9e-70 267.7 247 59.1
Sc13g0003450 Simmondsia chinensis HOM05D001780 ORTHO05D005322 1.5e-69 266.9 279 55.2
ECA240G0962 Erigeron canadensis HOM05D001780 ORTHO05D005322 2.6e-69 266.2 278 55.4
Aqoxy2G02980_Aqoxy2G02981 Aquilegia oxysepala HOM05D001780 ORTHO05D005322 3.4e-69 265.8 281 54.1
BraA06t26775Z Brassica rapa HOM05D001780 ORTHO05D005322 7.5e-69 264.6 277 54.5
Hund03251 Selenicereus undatus HOM05D001780 ORTHO05D005322 1.3e-68 263.8 274 56.2
BcaC03g17692 Brassica carinata HOM05D001780 ORTHO05D005322 3.2e-67 259.2 269 55.8
Duzib160G0626 Durio zibethinus HOM05D001780 ORTHO05D005322 3.2e-67 259.2 215 63.3
Sabra10G0009300 Salix brachista HOM05D001780 ORTHO05D005322 9.2e-67 257.7 191 68.6
A02p37850 Brassica napus HOM05D001780 ORTHO05D005322 1.2e-66 257.3 277 54.9
BraA02t08767Z Brassica rapa HOM05D001780 ORTHO05D005322 1.2e-66 257.3 277 54.9
Os02g0778200 Oryza sativa ssp. japonica HOM05D001780 ORTHO05D005322 3.0e-65 252.7 224 60.3
arahy.Tifrunner.gnm1.ann1.A68CME Arachis hypogaea HOM05D001780 ORTHO05D005322 5.0e-65 251.9 281 52.0
Lj6A676G61 Lonicera japonica HOM05D001780 ORTHO05D005322 5.0e-65 251.9 288 51.0
AUR62029200 Chenopodium quinoa HOM05D001780 ORTHO05D005322 1.5e-64 250.4 250 56.8
Atru.chr4.2840 Acer truncatum HOM05D001780 ORTHO05D005322 1.9e-64 250.0 342 47.1
AUR62014941 Chenopodium quinoa HOM05D001780 ORTHO05D005322 1.9e-64 250.0 251 56.6
Ah.01g003180 Amaranthus hybridus HOM05D001780 ORTHO05D005322 2.5e-64 249.6 276 54.7
Zm00001eb256880 Zea mays HOM05D001780 ORTHO05D005322 4.3e-64 248.8 224 59.4
CDE01G0296 Ceratophyllum demersum HOM05D001780 ORTHO05D005322 9.5e-64 247.7 270 51.5
ATR0796G005 Amborella trichopoda HOM05D001780 ORTHO05D005322 2.8e-63 246.1 279 50.5
GSVIVG01017762001 Vitis vinifera HOM05D001780 ORTHO05D005322 1.4e-62 243.8 429 38.9
EL10Ac9g22594 Beta vulgaris HOM05D001780 ORTHO05D005322 3.4e-61 239.2 277 53.4
CDE12G0042 Ceratophyllum demersum HOM05D001780 ORTHO05D005322 1.1e-56 224.2 214 55.1
Rhsim04G0222400 Rhododendron simsii HOM05D001780 ORTHO05D005322 1.9e-56 223.4 393 39.4
Mapoly0002s0241 Marchantia polymorpha HOM05D001780 ORTHO05D005322 3.3e-56 222.6 231 51.1
COL.COLO4_34741 Corchorus olitorius HOM05D001780 ORTHO05D005322 1.6e-55 220.3 262 48.1
Pp3c17_5990 Physcomitrium patens HOM05D001780 ORTHO05D005322 3.6e-55 219.2 230 53.0
unitig_0.g2594 Utricularia gibba HOM05D001780 ORTHO05D005322 8.1e-55 218.0 162 68.5
TAR383G0182 Trochodendron aralioides HOM05D001780 ORTHO05D005322 2.3e-54 216.5 162 69.1
HPP92_016436 Vanilla planifolia HOM05D001780 ORTHO05D005322 2.6e-53 213.0 247 49.0
MBI19_g29219_MAGBIO Magnolia biondii HOM05D001780 ORTHO05D005322 3.4e-53 212.6 244 52.9
SEGI_15432 Sequoiadendron giganteum HOM05D001780 ORTHO05D005322 5.8e-53 211.8 215 53.5
Cc03_g01890 Coffea canephora HOM05D001780 ORTHO05D005322 1.2e-50 204.1 164 65.9
AagrBONN_evm.TU.Sc2ySwM_340.179 Anthoceros agrestis HOM05D001780 ORTHO05D005322 1.3e-49 200.7 206 52.9
Cpa.g.sc16.173 Carica papaya HOM05D001780 ORTHO05D005322 1.4e-46 190.7 148 64.9
vmacro08155 Vaccinium macrocarpon HOM05D001780 ORTHO05D005322 2.4e-46 189.9 153 64.1
SMO230G0004 Selaginella moellendorffii HOM05D001780 ORTHO05D005322 7.6e-45 184.9 218 46.3
SMO367G0518 Selaginella moellendorffii HOM05D001780 ORTHO05D005322 7.6e-45 184.9 218 46.3
COL.COLO4_04960 Corchorus olitorius HOM05D001780 ORTHO05D005322 7.3e-40 168.3 275 41.1
Lsat_1_v5_gn_3_30900 Lactuca sativa HOM05D001780 ORTHO05D005322 4.0e-38 162.5 179 54.2
PRCOL_00005558 Prasinoderma coloniale HOM05D001780 ORTHO05D005322 6.9e-38 161.8 198 46.0
Cre16.g689871 Chlamydomonas reinhardtii HOM05D001780 ORTHO05D005322 1.7e-36 157.1 210 45.2
MCO13G360 Micromonas commoda HOM05D001780 ORTHO05D005322 6.4e-36 155.2 185 45.4
TPR.G13843 Trifolium pratense HOM05D001780 ORTHO05D005322 1.1e-30 137.9 126 61.1
CBR_g56609 Chara braunii HOM05D001780 ORTHO05D005322 5.6e-24 115.5 100 58.0
Lsat_1_v5_gn_7_51800 Lactuca sativa HOM05D001780 ORTHO05D022113 3.7e-23 112.8 121 56.2
Pp3s46_440 Physcomitrium patens HOM05D001780 ORTHO05D005322 1.0e-20 104.8 81 58.0
Cfa026798 Carpinus fangiana HOM05D001780 ORTHO05D005322 2.5e-19 100.1 202 34.2
Actinidia40255 Actinidia chinensis HOM05D001780 ORTHO05D005322 3.2e-19 99.8 114 51.8
CSS0010227 Camellia sinensis var. sinensis HOM05D001780 ORTHO05D022113 5.5e-19 99.0 105 53.3
TPR.G13831 Trifolium pratense HOM05D002200 ORTHO05D002294 9.3e-19 98.2 71 71.8
vmacro08154 Vaccinium macrocarpon HOM05D001780 ORTHO05D005322 1.6e-18 97.4 104 53.8
HanXRQChr13g0411251 Helianthus annuus HOM05D001780 ORTHO05D005322 2.1e-18 97.1 249 34.1
CSS0032424 Camellia sinensis var. sinensis HOM05D001780 ORTHO05D005322 2.3e-17 93.6 95 53.7
Cc03_g01900 Coffea canephora HOM05D001780 ORTHO05D005322 8.7e-17 91.7 104 51.0
Ca_28665_v3 Cicer arietinum L. HOM05D001780 ORTHO05D005322 2.5e-16 90.1 217 30.4
Lsat_1_v5_gn_9_91680 Lactuca sativa HOM05D001780 ORTHO05D005322 6.3e-15 85.5 95 52.6
Aqoxy2G02510 Aquilegia oxysepala HOM05D001780 ORTHO05D005322 3.1e-14 83.2 156 37.2
MELO3C006665.2 Cucumis melo HOM05D001780 ORTHO05D005322 5.9e-13 79.0 42 88.1
TPR.G39347 Trifolium pratense HOM05D001780 ORTHO05D005322 7.6e-13 78.6 85 51.8
COL.COLO4_34834 Corchorus olitorius HOM05D001780 ORTHO05D005322 6.5e-12 75.5 33 97.0
QL06p008955 Quercus lobata HOM05D001780 ORTHO05D013332 1.5e-08 64.3 47 66.0
CsaV3_3G014650 Cucumis sativus L. HOM05D001780 ORTHO05D005322 4.3e-08 62.8 30 96.7
Oeu007004.1 Olea europaea HOM05D001780 ORTHO05D005322 2.8e-07 60.1 30 90.0
Cre16.g651650 Chlamydomonas reinhardtii HOM05D001780 ORTHO05D004373 3.1e-06 56.6 59 44.1
Cre16.g651750 Chlamydomonas reinhardtii HOM05D001780 ORTHO05D004373 3.1e-06 56.6 59 44.1
QL10p047812 Quercus lobata HOM05D001780 ORTHO05D004373 4.1e-06 56.2 62 40.3
TPR.G13850 Trifolium pratense HOM05D001780 ORTHO05D005322 5.3e-06 55.8 74 51.4
AUR62002268 Chenopodium quinoa HOM05D001780 ORTHO05D004373 6.9e-06 55.5 60 43.3
AUR62015426 Chenopodium quinoa HOM05D001780 ORTHO05D004373 6.9e-06 55.5 60 43.3
Os06g0645400 Oryza sativa ssp. japonica HOM05D001780 ORTHO05D004373 6.9e-06 55.5 60 40.0
BcaB07g34212 Brassica carinata HOM05D001780 ORTHO05D005322 9.0e-06 55.1 29 82.8


User provided reference genes

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