Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 7.6e-195 683.7 360 100.0
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 7.6e-195 683.7 360 100.0
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.8e-188 662.5 360 97.2
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 2.5e-182 642.1 360 94.2
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 6.2e-181 637.5 360 93.3
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 1.9e-161 572.8 357 84.3
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 3.6e-136 488.8 365 71.0
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 1.1e-134 483.8 362 71.8
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 3.3e-134 482.3 366 72.1
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 2.0e-131 473.0 367 71.1
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 2.6e-131 472.6 382 68.1
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 3.5e-131 472.2 367 70.6
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 1.7e-130 469.9 365 70.1
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 5.0e-130 468.4 366 69.9
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 3.2e-129 465.7 367 69.8
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 5.5e-129 464.9 361 69.5
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 7.2e-129 464.5 363 68.3
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 9.4e-129 464.2 359 68.5
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 1.2e-128 463.8 362 69.3
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 3.0e-127 459.1 362 68.8
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 6.8e-127 458.0 385 66.2
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 8.8e-127 457.6 367 68.1
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 3.4e-126 455.7 361 67.3
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 5.7e-126 454.9 382 66.0
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 2.2e-125 453.0 360 67.8
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 2.8e-125 452.6 364 65.9
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.4e-124 450.3 355 67.3
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 1.8e-124 449.9 362 68.8
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 1.8e-124 449.9 360 67.8
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 3.1e-124 449.1 363 65.6
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 3.1e-124 449.1 355 69.9
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 4.1e-124 448.7 373 65.4
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 5.4e-124 448.4 364 66.5
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 7.0e-124 448.0 371 68.7
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 7.0e-124 448.0 371 67.1
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.6e-123 446.8 367 67.6
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 4.5e-123 445.3 358 66.8
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 7.7e-123 444.5 366 66.4
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 7.7e-123 444.5 361 67.0
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 1.3e-122 443.7 357 66.4
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 3.8e-122 442.2 366 66.1
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 3.8e-122 442.2 364 66.2
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 6.5e-122 441.4 363 65.8
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 8.5e-122 441.0 358 66.8
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.1e-121 440.7 366 65.6
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 1.5e-121 440.3 365 65.5
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 1.9e-121 439.9 366 65.3
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 5.5e-121 438.3 363 64.5
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 7.2e-121 438.0 380 63.2
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 9.4e-121 437.6 360 67.2
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 9.4e-121 437.6 367 64.9
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.7e-120 436.0 380 62.9
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 3.6e-120 435.6 367 64.0
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 4.7e-120 435.3 364 65.4
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 3.0e-119 432.6 363 64.7
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 8.8e-119 431.0 366 65.6
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 2.6e-118 429.5 369 66.1
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 3.4e-118 429.1 366 65.3
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 1.7e-117 426.8 363 65.0
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 2.8e-117 426.0 363 65.0
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 3.7e-117 425.6 395 60.8
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 4.9e-117 425.2 366 64.5
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 6.3e-117 424.9 363 64.7
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 1.1e-116 424.1 364 62.9
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 5.4e-116 421.8 370 62.2
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 1.2e-115 420.6 380 63.2
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 1.6e-115 420.2 378 61.6
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 1.6e-115 420.2 368 63.0
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 1.3e-114 417.2 378 61.4
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.3e-114 416.4 363 63.9
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 3.3e-113 412.5 365 62.2
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 4.7e-112 408.7 430 55.6
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.4e-111 407.1 366 64.8
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 5.7e-110 401.7 390 60.0
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 2.2e-109 399.8 379 61.5
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 9.2e-108 394.4 372 60.5
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.2e-107 394.0 340 65.0
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 1.6e-107 393.7 363 61.2
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 1.3e-106 390.6 368 60.1
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 3.3e-105 386.0 363 59.2
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 4.0e-103 379.0 395 56.7
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 8.9e-103 377.9 365 58.9
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 8.9e-103 377.9 369 60.4
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 2.0e-102 376.7 384 58.1
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 1.3e-101 374.0 371 60.6
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 2.2e-101 373.2 366 59.3
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 6.4e-101 371.7 365 58.1
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 8.3e-101 371.3 366 58.2
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 4.1e-100 369.0 344 60.8
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 4.1e-100 369.0 369 60.2
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 9.2e-100 367.9 389 58.1
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 1.6e-99 367.1 431 52.9
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 7.8e-99 364.8 362 56.9
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 1.0e-98 364.4 362 56.4
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 8.6e-98 361.3 344 58.7
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 2.5e-97 359.8 367 57.5
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 7.3e-97 358.2 367 57.2
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 4.7e-96 355.5 366 56.6
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 6.2e-96 355.1 369 53.4
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 8.9e-95 351.3 386 56.7
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 9.8e-94 347.8 370 56.2
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 1.7e-93 347.1 387 54.5
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 3.2e-92 342.8 382 54.5
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 3.2e-92 342.8 382 54.5
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 2.7e-91 339.7 365 55.6
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 1.2e-88 330.9 356 52.8
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 1.4e-87 327.4 382 53.4
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 8.9e-87 324.7 381 53.3
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 8.9e-87 324.7 381 53.3
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 2.9e-85 319.7 382 52.6
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 6.4e-85 318.5 382 52.6
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 1.1e-84 317.8 383 53.0
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 2.4e-84 316.6 382 52.6
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 3.0e-74 283.1 309 55.3
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 2.5e-73 280.0 390 43.1
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 7.6e-70 268.5 242 63.2
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 5.4e-68 262.3 361 48.2
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 2.7e-67 260.0 238 62.2
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.8e-63 247.3 187 67.9
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 5.8e-62 242.3 350 42.3
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 7.6e-62 241.9 300 51.3
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 2.4e-55 220.3 438 36.1
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 1.2e-54 218.0 260 50.4
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 1.9e-49 200.7 224 53.6
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 6.5e-45 185.7 365 35.1
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 3.1e-39 166.8 153 62.1
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 3.4e-38 163.3 119 66.4
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 5.9e-38 162.5 124 66.9
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 5.2e-18 96.3 232 27.6
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 5.2e-18 96.3 394 26.4
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 2.0e-17 94.4 70 67.1
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 4.4e-17 93.2 113 47.8
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 9.7e-17 92.0 117 48.7
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 6.3e-16 89.4 56 80.4
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 3.5e-14 83.6 56 73.2
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 5.9e-14 82.8 511 23.9
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 1.9e-12 77.8 50 76.0
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 3.2e-12 77.0 59 67.8
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 4.2e-12 76.6 61 65.6
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 9.4e-12 75.5 61 65.6
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 8.0e-11 72.4 60 63.3
Cfa025636 Carpinus fangiana HOM05D002744 ORTHO05D006546 1.2e-09 68.6 410 25.6


User provided reference genes

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