Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.8e-145 519.2 258 100.0
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.8e-145 519.2 258 100.0
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 1.5e-131 473.0 244 95.1
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 4.2e-131 471.5 244 94.7
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 3.1e-105 385.6 244 78.3
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 5.4e-102 374.8 208 90.9
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 6.2e-98 361.3 245 74.3
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 3.7e-87 325.5 217 72.8
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 6.4e-79 298.1 244 60.2
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 4.6e-77 292.0 243 59.7
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 1.3e-76 290.4 244 59.4
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 4.3e-75 285.4 244 56.1
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.6e-74 282.3 244 55.7
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 4.8e-74 282.0 244 57.4
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 8.1e-74 281.2 244 57.8
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 3.1e-73 279.3 244 54.5
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 4.0e-73 278.9 244 57.0
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 9.0e-73 277.7 245 59.2
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.2e-72 277.3 234 58.5
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 3.4e-72 275.8 244 56.1
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 4.4e-72 275.4 244 53.7
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 7.6e-72 274.6 244 53.7
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.3e-71 273.9 236 58.1
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 1.7e-71 273.5 244 55.7
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 2.9e-71 272.7 238 57.6
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 1.4e-70 270.4 238 57.1
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.4e-70 269.6 245 55.5
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.3e-68 263.8 244 54.9
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 1.7e-68 263.5 237 58.6
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 2.5e-67 259.6 244 52.9
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 5.6e-67 258.5 236 55.1
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 2.8e-66 256.1 245 50.6
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 2.8e-66 256.1 238 56.7
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 1.1e-65 254.2 234 53.4
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.4e-65 253.8 234 54.7
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.4e-65 253.1 234 53.4
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 6.9e-65 251.5 234 53.0
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.3e-63 247.3 236 53.8
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 1.3e-63 247.3 236 50.4
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.7e-63 246.9 244 50.8
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 2.9e-63 246.1 201 57.7
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 1.1e-62 244.2 243 51.4
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 1.1e-62 244.2 244 50.4
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.9e-62 243.4 234 48.3
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 7.1e-62 241.5 246 50.0
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 9.3e-62 241.1 244 51.2
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 1.6e-61 240.4 239 49.0
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.1e-61 240.0 244 50.4
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.1e-61 240.0 245 50.6
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 2.1e-61 240.0 241 51.9
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.5e-61 239.2 244 50.0
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 4.6e-61 238.8 242 50.4
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 6.0e-61 238.4 237 48.9
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.0e-61 238.4 244 48.8
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.0e-61 238.4 244 48.8
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 7.9e-61 238.0 215 56.7
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 7.9e-61 238.0 244 48.8
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.3e-60 237.3 234 49.6
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.3e-60 236.5 229 52.8
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 3.0e-60 236.1 244 48.4
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.1e-60 235.3 244 48.4
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 2.5e-59 233.0 250 48.4
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 7.4e-59 231.5 244 47.1
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 1.6e-58 230.3 243 49.0
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.7e-58 229.2 243 48.1
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 4.8e-58 228.8 218 50.9
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 6.2e-58 228.4 244 48.0
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 2.4e-57 226.5 253 43.9
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.1e-57 226.1 234 47.9
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.1e-57 226.1 234 47.4
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 6.9e-57 224.9 230 46.1
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 2.6e-56 223.0 230 47.8
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 2.6e-56 223.0 243 46.1
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 5.8e-56 221.9 223 48.0
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.2e-55 219.9 234 47.4
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 3.8e-55 219.2 236 48.3
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 6.5e-55 218.4 236 46.6
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 6.5e-55 218.4 235 48.9
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 8.4e-55 218.0 238 47.5
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 1.4e-54 217.2 244 44.7
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 1.4e-54 217.2 201 49.3
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 1.4e-54 217.2 244 45.1
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.9e-54 216.9 237 48.1
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 2.5e-54 216.5 244 45.1
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 2.5e-54 216.5 236 47.0
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 3.2e-54 216.1 244 45.1
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 9.3e-54 214.5 236 47.5
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 9.3e-54 214.5 241 47.3
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 1.2e-53 214.2 234 45.3
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 1.6e-53 213.8 236 47.5
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 1.6e-53 213.8 236 47.5
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 2.7e-53 213.0 236 47.0
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 3.5e-53 212.6 236 47.0
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 3.5e-53 212.6 236 47.0
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 3.5e-53 212.6 243 45.3
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 3.5e-53 212.6 229 49.8
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 7.9e-53 211.5 234 45.3
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.0e-52 211.1 234 44.9
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.0e-52 211.1 245 45.7
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 1.3e-52 210.7 245 47.8
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 2.3e-52 209.9 250 42.8
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 3.9e-52 209.1 238 45.0
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 3.9e-52 209.1 236 45.8
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 1.5e-51 207.2 242 46.3
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 1.9e-51 206.8 199 50.8
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 3.3e-51 206.1 245 42.9
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 2.8e-50 203.0 237 47.3
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 3.7e-50 202.6 246 44.7
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.4e-49 199.9 235 43.8
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 3.1e-49 199.5 245 43.3
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.5e-48 197.2 254 40.6
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 3.4e-48 196.1 243 44.4
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 5.9e-48 195.3 237 45.1
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.3e-47 194.1 155 56.8
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 1.7e-47 193.7 235 44.7
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 8.4e-47 191.4 244 44.3
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 1.1e-46 191.0 242 42.6
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 1.4e-46 190.7 232 43.1
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 2.5e-46 189.9 226 45.1
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 4.2e-46 189.1 236 43.6
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 5.5e-46 188.7 232 43.5
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 2.7e-45 186.4 237 44.3
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 2.7e-45 186.4 235 45.5
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 6.1e-45 185.3 195 45.1
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.0e-44 184.5 152 55.9
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 1.3e-44 184.1 237 42.6
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 5.1e-44 182.2 227 40.1
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 9.7e-43 177.9 222 41.9
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 9.7e-43 177.9 242 39.3
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 1.3e-42 177.6 235 44.3
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 1.3e-42 177.6 230 43.0
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.6e-42 177.2 222 41.9
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 6.3e-42 175.3 153 52.9
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 8.2e-42 174.9 183 45.4
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 9.0e-41 171.4 230 37.8
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 1.5e-40 170.6 179 43.6
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 2.6e-40 169.9 220 39.5
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 1.3e-39 167.5 240 40.4
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 1.3e-39 167.5 240 40.4
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 2.9e-39 166.4 145 52.4
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.9e-39 166.4 165 47.3
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 3.8e-39 166.0 220 37.7
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 3.8e-39 166.0 257 34.2
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 6.5e-39 165.2 219 39.7
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 1.4e-38 164.1 234 34.6
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 1.4e-38 164.1 259 34.4
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 3.2e-38 162.9 151 48.3
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 2.7e-37 159.8 245 40.8
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 1.4e-36 157.5 122 58.2
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 2.0e-35 153.7 214 37.9
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 4.3e-35 152.5 174 47.1
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.8e-34 149.1 220 38.2
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 3.1e-33 146.4 225 34.7
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 2.0e-32 143.7 228 33.3
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.7e-31 140.6 146 48.6
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 8.5e-31 138.3 119 55.5
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 1.9e-30 137.1 192 34.4
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 1.4e-28 131.0 140 42.9
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.7e-26 122.9 210 34.8
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 2.2e-23 113.6 81 65.4
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 9.4e-22 108.2 115 49.6
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 2.3e-20 103.6 87 52.9
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 6.7e-20 102.1 89 50.6
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 6.7e-20 102.1 205 33.2
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 4.4e-19 99.4 93 48.4
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 1.7e-18 97.4 89 53.9
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 2.2e-18 97.1 141 38.3
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.3e-18 95.5 151 35.1
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 7.0e-17 92.0 131 41.2
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 1.0e-15 88.2 101 40.6
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 1.7e-15 87.4 78 48.7
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 1.7e-15 87.4 100 41.0
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.7e-15 87.4 221 33.0
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 9.4e-14 81.6 81 48.1
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 2.1e-13 80.5 106 36.8
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 4.7e-13 79.3 152 28.3
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.1e-09 68.2 55 52.7
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 1.9e-06 57.4 107 38.3
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 2.5e-06 57.0 71 50.7
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 9.4e-06 55.1 62 46.8


User provided reference genes

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